EY684658

Overview
NameEY684658
Unique NameEY684658
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length869
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY684658 vs. ExPASy Swiss-Prot
Match: TBA3E_HUMAN (Tubulin alpha-3E chain OS=Homo sapiens GN=TUBA3E PE=1 SV=2)

HSP 1 Score: 320.857 bits (821), Expect = 6.034e-87
Identity = 153/197 (77.66%), Postives = 173/197 (87.82%), Query Frame = 3 
Query:   12 AIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQXVDWCPTXFKCGINYQPPTVVPGGDLAKVHRADGMISKSGSGAETLSRIRHPFHLPVATAGF 602
            AIYDICRR+LDIERPTYTNLNRL+ Q++SS+TASLRFDGALNVD+TEFQTNLVPYPRIHF L++YAPVISAEKA+HEQLSVAEITN+ FEP++ M KCDPRHGKYMACC++YRGDVVPKDVNAA+ATIKTKRTIQ VDWCPT FK GINYQPPTVVPGGDLAKV RA  M+S + + AE  +R+ H F L  A   F
Sbjct:  208 AIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLVHKFDLMYAKWAF 404
[Close]
BLAST of EY684658 vs. ExPASy Swiss-Prot
Match: TBA1_DROME (Tubulin alpha-1 chain OS=Drosophila melanogaster GN=alphaTub84B PE=2 SV=1)

HSP 1 Score: 320.857 bits (821), Expect = 6.034e-87
Identity = 153/197 (77.66%), Postives = 172/197 (87.31%), Query Frame = 3 
Query:   12 AIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQXVDWCPTXFKCGINYQPPTVVPGGDLAKVHRADGMISKSGSGAETLSRIRHPFHLPVATAGF 602
            AIYDICRR+LDIERPTYTNLNRL+ Q++SS+TASLRFDGALNVD+TEFQTNLVPYPRIHF L +YAPVISAEKA+HEQLSVAEITN+ FEP++ M KCDPRHGKYMACC++YRGDVVPKDVNAA+ATIKTKRTIQ VDWCPT FK GINYQPPTVVPGGDLAKV RA  M+S + + AE  +R+ H F L  A   F
Sbjct:  208 AIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAF 404
[Close]
BLAST of EY684658 vs. ExPASy Swiss-Prot
Match: TBA_XENLA (Tubulin alpha chain OS=Xenopus laevis GN=tuba PE=2 SV=2)

HSP 1 Score: 320.472 bits (820), Expect = 7.880e-87
Identity = 152/197 (77.16%), Postives = 174/197 (88.32%), Query Frame = 3 
Query:   12 AIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQXVDWCPTXFKCGINYQPPTVVPGGDLAKVHRADGMISKSGSGAETLSRIRHPFHLPVATAGF 602
            AIYDICRR+LDIERPTYTNLNRL+SQ++SS+TASLRFDGALNVD+TEFQTNLVPYPRIHF L++YAPVISAEKA+HEQL+VA+ITN+ FEP++ M KCDPRHGKYMACCL+YRGDVVPKDVNAA+ATIKTKR+IQ VDWCPT FK GINYQPPTVVPGGDLAKV RA  M+S + + AE  +R+ H F L  A   F
Sbjct:  208 AIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVADITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAF 404
[Close]
BLAST of EY684658 vs. ExPASy Swiss-Prot
Match: TBA1_PARLI (Tubulin alpha-1 chain OS=Paracentrotus lividus PE=2 SV=1)

HSP 1 Score: 320.472 bits (820), Expect = 7.880e-87
Identity = 152/197 (77.16%), Postives = 173/197 (87.82%), Query Frame = 3 
Query:   12 AIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQXVDWCPTXFKCGINYQPPTVVPGGDLAKVHRADGMISKSGSGAETLSRIRHPFHLPVATAGF 602
            AIYDICRR+LDIERPTYTNLNRL+ Q++SS+TASLRFDGALNVD+TEFQTNLVPYPRIHF L++YAPVISAEKA+HEQL+V+EITN+ FEP++ M KCDPRHGKYMACCL+YRGDVVPKDVNAA+ATIKTKRTIQ VDWCPT FK GINYQPPTVVPGGDLAKV RA  M+S + + AE  +R+ H F L  A   F
Sbjct:  208 AIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVSEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAF 404
[Close]
BLAST of EY684658 vs. ExPASy Swiss-Prot
Match: TBA_TRYCR (Tubulin alpha chain OS=Trypanosoma cruzi PE=3 SV=1)

HSP 1 Score: 320.087 bits (819), Expect = 1.029e-86
Identity = 155/197 (78.68%), Postives = 173/197 (87.82%), Query Frame = 3 
Query:   12 AIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQXVDWCPTXFKCGINYQPPTVVPGGDLAKVHRADGMISKSGSGAETLSRIRHPFHLPVATAGF 602
            AIYD+ R +LDIERPTYTNLNRL+ QV+S+LTASLRFDGALNVD+TEFQTNLVPYPRIHF+L++YAPVISAEKA+HEQLSV+EI+N+ FEP+SMM KCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQ VDW PT FKCGINYQPPTVVPGGDLAKV RA  MI+ S + AE  +RI H F L  +   F
Sbjct:  208 AIYDLTRANLDIERPTYTNLNRLIGQVVSALTASLRFDGALNVDLTEFQTNLVPYPRIHFVLTTYAPVISAEKAYHEQLSVSEISNAVFEPASMMTKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWSPTGFKCGINYQPPTVVPGGDLAKVQRAVCMIANSTAIAEVFARIDHKFDLMYSKRAF 404
[Close]
BLAST of EY684658 vs. ExPASy Swiss-Prot
Match: TBA_XENTR (Tubulin alpha chain OS=Xenopus tropicalis GN=tuba PE=2 SV=1)

HSP 1 Score: 319.701 bits (818), Expect = 1.344e-86
Identity = 152/197 (77.16%), Postives = 172/197 (87.31%), Query Frame = 3 
Query:   12 AIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQXVDWCPTXFKCGINYQPPTVVPGGDLAKVHRADGMISKSGSGAETLSRIRHPFHLPVATAGF 602
            AIYDICRR+LDIERPTYTNLNRL+SQ++SS+TASLRFDGALNVD+TEFQTNLVPYPRIHF L++YAPVISAEKA+HEQLSV+EITN+ FEP++ M KCDPRHGKYMACCL+YRGDVVPKDVNAA+A IKTKRTIQ VDWCPT FK GINYQPPT VPGGDLAKV RA  M+S + + AE  +R+ H F L  A   F
Sbjct:  208 AIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVSEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIAAIKTKRTIQFVDWCPTGFKVGINYQPPTAVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAF 404
[Close]
BLAST of EY684658 vs. ExPASy Swiss-Prot
Match: TBA3_BOVIN (Tubulin alpha-3 chain OS=Bos taurus GN=TUBA3 PE=2 SV=1)

HSP 1 Score: 319.701 bits (818), Expect = 1.344e-86
Identity = 152/197 (77.16%), Postives = 172/197 (87.31%), Query Frame = 3 
Query:   12 AIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQXVDWCPTXFKCGINYQPPTVVPGGDLAKVHRADGMISKSGSGAETLSRIRHPFHLPVATAGF 602
            AIYDICRR+LDIERPTYTNLNRL+ Q++SS+TASLRFDGALNVD+TEFQTNLVPYPRIHF L++YAPVISAEKA+HEQLSVAEITN+ FEP++ M KCDPRHGKYMACC++YRGDVVPKDVNAA+ATIKTKRTIQ VDWCPT FK GINYQPPTVVPGGDLAKV RA  M+S + + AE  +R+ H   L  A   F
Sbjct:  208 AIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKLDLMYAKRAF 404
[Close]
BLAST of EY684658 vs. ExPASy Swiss-Prot
Match: TBA2_PATVU (Tubulin alpha-2/alpha-4 chain OS=Patella vulgata GN=TUB2 PE=2 SV=1)

HSP 1 Score: 319.701 bits (818), Expect = 1.344e-86
Identity = 151/197 (76.65%), Postives = 173/197 (87.82%), Query Frame = 3 
Query:   12 AIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQXVDWCPTXFKCGINYQPPTVVPGGDLAKVHRADGMISKSGSGAETLSRIRHPFHLPVATAGF 602
            AIYDICRR+LDIERPTYTNLNRL+ Q++SS+TASLRFDGALNVD+TEFQTNLVPYPRIHF L++YAPVISAEKA+HEQL+VAEITN+ FEP++ M KCDPRHGKYM+CC++YRGDVVPKDVNAA+ATIKTKRTIQ VDWCPT FK GINYQPPTVVPGGDLAKV RA  M+S + + AE  +R+ H F L  A   F
Sbjct:  208 AIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPANQMVKCDPRHGKYMSCCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAF 404
[Close]
BLAST of EY684658 vs. ExPASy Swiss-Prot
Match: TBA1A_PIG (Tubulin alpha-1A chain OS=Sus scrofa GN=TUBA1A PE=1 SV=1)

HSP 1 Score: 319.701 bits (818), Expect = 1.344e-86
Identity = 152/197 (77.16%), Postives = 172/197 (87.31%), Query Frame = 3 
Query:   12 AIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQXVDWCPTXFKCGINYQPPTVVPGGDLAKVHRADGMISKSGSGAETLSRIRHPFHLPVATAGF 602
            AIYDICRR+LDIERPTYTNLNRL+ Q++SS+TASLRFDGALNVD+TEFQTNLVPYPR HF L++YAPVISAEKA+HEQLSVAEITN+ FEP++ M KCDPRHGKYMACCL+YRGDVVPKDVNAA+ATIKTKRTIQ VDWCPT FK GINY+PPTVVPGGDLAKV RA  M+S + + AE  +R+ H F L  A   F
Sbjct:  208 AIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRAHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYEPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAF 404
[Close]
BLAST of EY684658 vs. ExPASy Swiss-Prot
Match: TBA1_APLCA (Tubulin alpha-1 chain OS=Aplysia californica PE=2 SV=1)

HSP 1 Score: 319.316 bits (817), Expect = 1.756e-86
Identity = 151/197 (76.65%), Postives = 173/197 (87.82%), Query Frame = 3 
Query:   12 AIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQXVDWCPTXFKCGINYQPPTVVPGGDLAKVHRADGMISKSGSGAETLSRIRHPFHLPVATAGF 602
            AIYDICRR+LDIERP+YTNLNRL+ Q++SS+TASLRFDGALNVD+TEFQTNLVPYPRIHF L++YAPVISAEKA+HEQLSVAEITN+ FEP++ + KCDPRHGKYMACC++YRGDVVPKDVNAA+ATIKTKRTIQ VDWCPT FK GINYQPPTVVPGGDLAKV RA  M+S + + AE  +R+ H F L  A   F
Sbjct:  208 AIYDICRRNLDIERPSYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQLVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAF 404
The following BLAST results are available for this feature:
BLAST of EY684658 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 412
Match NameE-valueIdentityDescription
TBA3E_HUMAN6.034e-8777.66Tubulin alpha-3E chain OS=Homo sapiens GN=TUBA3E P... [more]
TBA1_DROME6.034e-8777.66Tubulin alpha-1 chain OS=Drosophila melanogaster G... [more]
TBA_XENLA7.880e-8777.16Tubulin alpha chain OS=Xenopus laevis GN=tuba PE=2... [more]
TBA1_PARLI7.880e-8777.16Tubulin alpha-1 chain OS=Paracentrotus lividus PE=... [more]
TBA_TRYCR1.029e-8678.68Tubulin alpha chain OS=Trypanosoma cruzi PE=3 SV=1[more]
TBA_XENTR1.344e-8677.16Tubulin alpha chain OS=Xenopus tropicalis GN=tuba ... [more]
TBA3_BOVIN1.344e-8677.16Tubulin alpha-3 chain OS=Bos taurus GN=TUBA3 PE=2 ... [more]
TBA2_PATVU1.344e-8676.65Tubulin alpha-2/alpha-4 chain OS=Patella vulgata G... [more]
TBA1A_PIG1.344e-8677.16Tubulin alpha-1A chain OS=Sus scrofa GN=TUBA1A PE=... [more]
TBA1_APLCA1.756e-8676.65Tubulin alpha-1 chain OS=Aplysia californica PE=2 ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-015-G11-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684658 ID=EY684658; Name=EY684658; organism=Citrus sinensis; type=EST; length=869bp
CCACGCGTCCGGCCATCTATGATATCTGCAGGCGCTCTCTTGACATTGAG
CGCCCCACTTACACCAATCTCAACCGACTTGTCTCTCAGGTGATCTCATC
CCTCACTGCCTCTTTGAGGTTTGATGGAGCTCTGAATGTGGATGTGACTG
AGTTCCAGACCAATTTGGTTCCCTATCCAAGGATCCATTTCATGCTCTCC
TCTTATGCCCCAGTTATCTCTGCAGAGAAGGCATTCCATGAGCAACTTTC
AGTTGCTGAGATCACCAACAGTGCTTTTGAGCCATCATCCATGATGGCCA
AATGTGACCCTCGTCATGGCAAGTATATGGCCTGCTGTTTGATGTATCGT
GGTGATGTTGTGCCTAAGGATGTGAATGCAGCTGTGGCCACCATCAAGAC
CAAGCGCACAATTCAGNTTGTTGACTGGTGCCCTACTGNATTCAAGTGTG
GTATCAACTATCAGCCACCAACTGTGGTCCCTGGCGGTGACCTTGCCAAG
GTGCACAGGGCTGACGGCATGATTTCCAAATCCGGCAGCGGGGCGGAGAC
GCTGTCGCGCATAAGACATCCGTTCCACCTACCCGTTGCCACAGCCGGCT
TCCGTGCCACAGACAAGCCGCCCACCCAAACCAAACACCCGACCGGACCC
CCACCACCACCGAAACCCCCCAACCGCACCCACCACGAGGAAGGGGCACG
GGGCGGGACACGGAAAGAGCCGACCATAAAAGACGCGACCGTGCCGAGAC
TGAGCAGCCGCAAGGAGGATCGGTCGGCACGCCGGGTGCGCTGGGTGGAC
AGCCCGGGCGTGGCACAGACGAGAGCGCGCCAGGGCGCCAGTCTGACCAC
CGAGGCGAACAGGAGGAGA
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