EY684646

Overview
NameEY684646
Unique NameEY684646
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length859
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684646 vs. ExPASy Swiss-Prot
Match: CHIA_SOLLC (Acidic 26 kDa endochitinase OS=Solanum lycopersicum GN=CHI3 PE=1 SV=1)

HSP 1 Score: 54.6842 bits (130), Expect = 1.837e-13
Identity = 36/124 (29.03%), Postives = 54/124 (43.55%), Query Frame = 3
Query:  258 FENLFAKRNTPVAHAVGFWDYHSFITAAALYQPHGFGTSAGKLMGQKEVAAFLGHVGSKTSCGYGVATGGPLAWGLCYNKEMSPNQIYCDDDFKYTYPCTPGVSYHGRGALPLYWNYNYGETGE 629
            FE + + RN     A GF+ Y +FI AA  +   GFGT+      +KE+AAF G    +T+ G    + G    G C+ K++  +                   Y+GRG + L    NY   G+
Sbjct:   36 FEQMLSFRNNDACPAKGFYTYDAFIAAANSFP--GFGTAGDDTARKKEIAAFFGQTSHETNGG----SAGTFTGGYCFVKQIEQSD-----------------RYYGRGPIQLTHQSNYERAGQ 136          

HSP 2 Score: 41.5874 bits (96), Expect = 1.837e-13
Identity = 17/51 (33.33%), Postives = 27/51 (52.94%), Query Frame = 1
Query:  691 FQAAMWKWMTPMXKH*PAAHDPFVGNWKPTKNEPWAKRGLGFGPTMKVLNG 843
            F+ A+W WMT      P+ H+  +G W P+  +  A R  G+G    ++NG
Sbjct:  159 FKTAIWFWMTEQDNK-PSCHNVIIGQWTPSPKDTAANRVPGYGVITNIING 208          
BLAST of EY684646 vs. ExPASy Swiss-Prot
Match: CHIA_SOLCI (Acidic endochitinase pcht28 OS=Solanum chilense PE=2 SV=1)

HSP 1 Score: 53.1434 bits (126), Expect = 1.837e-13
Identity = 35/124 (28.23%), Postives = 53/124 (42.74%), Query Frame = 3
Query:  258 FENLFAKRNTPVAHAVGFWDYHSFITAAALYQPHGFGTSAGKLMGQKEVAAFLGHVGSKTSCGYGVATGGPLAWGLCYNKEMSPNQIYCDDDFKYTYPCTPGVSYHGRGALPLYWNYNYGETGE 629
            FE + + RN     A GF+ Y +FI AA  +   GFGT+      +KE+AAF G    +T  G    + G    G C+ +++  +                   Y+GRG + L    NY   G+
Sbjct:   36 FEQMLSFRNNDACPAKGFYTYDAFIAAANSFP--GFGTTGDDTARKKEIAAFFGQTSHETKGG----SAGTFTGGYCFVRQIDQSD-----------------RYYGRGPIQLTHQSNYERAGQ 136          

HSP 2 Score: 43.1282 bits (100), Expect = 1.837e-13
Identity = 18/52 (34.62%), Postives = 28/52 (53.85%), Query Frame = 1
Query:  691 FQAAMWKWMTPMXKH*PAAHDPFVGNWKPTKNEPWAKRGLGFGPTMKVLNGG 846
            F+ A+W WMT      P+ H+  +G W P+  +  A R  G+G    ++NGG
Sbjct:  159 FRTAIWFWMTAQDNK-PSCHNVIIGQWTPSPADTAANRVPGYGVITNIINGG 209          
BLAST of EY684646 vs. ExPASy Swiss-Prot
Match: CHIT_AVESA (Endochitinase (Fragments) OS=Avena sativa PE=1 SV=1)

HSP 1 Score: 49.2914 bits (116), Expect = 2.410e-13
Identity = 34/129 (26.36%), Postives = 56/129 (43.41%), Query Frame = 3
Query:  306 GFWDYHSFITAAALYQPHGFGTSAGKLMGQKEVAAFLGHVGSKTSCGYGVATGGPLAWGLCYNKEMSPNQIYCDDDFKYTYPCTPGVSYHGRGALPLYWNYNYGETGEPLKLIY*TTPNNLKNNATLTF 692
            GF+ Y +FI AA  +    F T+    + ++EVAAFL     +T+ G+  A  GP   G   +                         Y GRG + + +NYNYG  G+ + +     P+ + ++ T+ F
Sbjct:   18 GFYTYDAFIAAAKSFP--AFATTGSTDVRKREVAAFLAQTSHETTGGWPTAPDGPYELGSTSD-------------------------YFGRGPIQISYNYNYGAAGKAIGVDLLRNPDLVTSDNTVEF 119          

HSP 2 Score: 46.595 bits (109), Expect = 2.410e-13
Identity = 20/56 (35.71%), Postives = 30/56 (53.57%), Query Frame = 1
Query:  691 FQAAMWKWMTPMXKH*PAAHDPFVGNWKPTKNEPWAKRGLGFGPTMKVLNGGPVVG 858
            F+ A+W WMTP     P++HD   G W P+  +  A R  G+G    +++GG   G
Sbjct:  119 FKTALWFWMTPQSPK-PSSHDVITGRWSPSSTDKAAGRVPGYGVLTNIIDGGVECG 173          
BLAST of EY684646 vs. ExPASy Swiss-Prot
Match: CHI6_ORYSJ (Chitinase 6 OS=Oryza sativa subsp. japonica GN=Cht6 PE=2 SV=1)

HSP 1 Score: 63.929 bits (154), Expect = 5.484e-12
Identity = 40/132 (30.30%), Postives = 62/132 (46.97%), Query Frame = 3
Query:  300 AVGFWDYHSFITAAALYQPHGFGTSAGKLMGQKEVAAFLGHVGSKTSCGYGVATGGPLAWGLCYNKEMS-PNQIYCDDDFKYTYPCTPGVSYHGRGALPLYWNYNYGETGEPLKLIY*TTPNNLKNNATLTF 692
            A GF+   +F+TAA  Y    FG +      ++E+AAF  H   +T                CY +E+  P++ YCD+     +PC  G  Y+GRG L + WN+NYG  G+ +       P+ +  +  L F
Sbjct:   90 AKGFYTRDAFLTAAGGYP--SFGRTGSVDDSKREIAAFFAHANHETI-------------KFCYIEEIDGPSKNYCDET-STQWPCMAGKGYYGRGPLQISWNFNYGPAGQSIGFDGLGDPDAVARSPVLAF 205          

HSP 2 Score: 27.335 bits (59), Expect = 5.484e-12
Identity = 16/51 (31.37%), Postives = 21/51 (41.18%), Query Frame = 1
Query:  691 FQAAMWKWMTPMXKH*PAAHDPFVGNWKPTKNEPWAKRGLGFGPTMKVLNG 843
            FQ A+W W   +       HD FV              G GFG T++ +NG
Sbjct:  205 FQTALWYWTNNV-------HDAFVS-------------GQGFGATIRAING 235          
BLAST of EY684646 vs. ExPASy Swiss-Prot
Match: CHIA_MAIZE (Endochitinase A OS=Zea mays PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.062e-11
Identity = 39/128 (30.47%), Postives = 60/128 (46.88%), Query Frame = 3
Query:  309 FWDYHSFITAAALYQPHGFGTSAGKLMGQKEVAAFLGHVGSKTSCGYGVATGGPLAWGLCYNKEMSPNQIYCDDDFKYTYPCTPGVSYHGRGALPLYWNYNYGETGEPLKLIY*TTPNNLKNNATLTF 692
            F+   +F++A   Y   GF     ++ G++E+AAF  HV  +T                CY  E++ +  YCD   +  +PC  G  Y+GRG L + WNYNYG  G  +       PN +  +A + F
Sbjct:  105 FYTRSAFLSAVNAYP--GFAHGGTEVEGKREIAAFFAHVTHETG-------------HFCYISEINKSNAYCDASNRQ-WPCAAGQKYYGRGPLQISWNYNYGPAGRDIGFNGLADPNRVAQDAVIAF 216          
BLAST of EY684646 vs. ExPASy Swiss-Prot
Match: AGI_URTDI (Lectin/endochitinase 1 OS=Urtica dioica GN=UDA1 PE=1 SV=3)

HSP 1 Score: 70.8626 bits (172), Expect = 1.062e-11
Identity = 46/146 (31.51%), Postives = 69/146 (47.26%), Query Frame = 3
Query:  258 FENLFAKRNTPVAHAVGFWDYHSFITAAALYQPHGFGTSAGKLMGQKEVAAFLGHVGSKTSCGYGVATGGPLAWGLCY-NKEMSPNQIYCDDDFKYTYPCTPGVSYHGRGALPLYWNYNYGETGEPLKLIY*TTPNNLKNNATLTF 692
            F+ +F+ R      + GF+ YHSF+ AA  +    FGT       ++EVAAFL H+   TS G       P AWGLC+ N        +C       +PC  G  Y  RG + L  N+NYG  G+ +       P+ ++ +  ++F
Sbjct:  139 FDQMFSHRKD--CPSQGFYSYHSFLVAAESFP--AFGTIGDVATRKREVAAFLAHISQATS-GERSDVENPHAWGLCHINTTTVTENDFCTSS---DWPCAAGKKYSPRGPIQLTHNFNYGLAGQAIGEDLIQNPDLVEKDPIISF 276          
BLAST of EY684646 vs. ExPASy Swiss-Prot
Match: CHIB_MAIZE (Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.628e-11
Identity = 38/131 (29.01%), Postives = 59/131 (45.04%), Query Frame = 3
Query:  309 FWDYHSFITAAALYQPHGFGTSAGKLMGQKEVAAFLGHVGSKTSCGYGVATGGPLAWGLCYNKEMSPNQIYCDDDFKYTYPCTPGVSYHGRGALPLYWNYNYGETGEPLKLIY*TTPNNLKNNATLTFSGS 701
            F+   +F++A   Y   GF     ++ G++E+AAF  H   +T                CY  E++ +  YCD   K  +PC  G  Y+GRG L + WNYNYG  G  +       P  +  +A + F  +
Sbjct:   94 FYTRSAFLSAVKGYP--GFAHGGSQVQGKREIAAFFAHATHETG-------------HFCYISEINKSNAYCDPT-KRQWPCAAGQKYYGRGPLQISWNYNYGPAGRAIGFDGLGDPGRVARDAVVAFKAA 208          

HSP 2 Score: 20.4014 bits (41), Expect = 2.628e-11
Identity = 6/9 (66.67%), Postives = 8/9 (88.89%), Query Frame = 1
Query:  691 FQAAMWKWM 717
            F+AA+W WM
Sbjct:  205 FKAALWFWM 213          
The following BLAST results are available for this feature:
BLAST of EY684646 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
CHIA_SOLLC1.837e-1329.03Acidic 26 kDa endochitinase OS=Solanum lycopersicu... [more]
CHIA_SOLCI1.837e-1328.23Acidic endochitinase pcht28 OS=Solanum chilense PE... [more]
CHIT_AVESA2.410e-1326.36Endochitinase (Fragments) OS=Avena sativa PE=1 SV=... [more]
CHI6_ORYSJ5.484e-1230.30Chitinase 6 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIA_MAIZE1.062e-1130.47Endochitinase A OS=Zea mays PE=1 SV=1[more]
AGI_URTDI1.062e-1131.51Lectin/endochitinase 1 OS=Urtica dioica GN=UDA1 PE... [more]
CHIB_MAIZE2.628e-1129.01Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-015-F08-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684646 ID=EY684646; Name=EY684646; organism=Citrus sinensis; type=EST; length=859bp
CCACGCGTCCGAATTTCTAAACGTAGCTCATTTAATTTCCTCCCATTCAT
TTAGCTATGAAGCTCAAATGGCAGCTAGTACTTTTTGCAACGGCAATTTT
ATCAGTGCTAGTCATTGTGCATGGCGATGAATCTTCAGTGAAGCCATTAG
TGAAGATTGTGAAGGGCAAGAAATTGTGTGACAAAGGGTGGGAGTGTAAA
GGATGGTCTGAGTATTGCTGCAATCAAACGATATCGGATTACTTTCAGAC
TTACCAATTTGAGAACCTTTTTGCAAAGCGTAACACCCCTGTGGCTCATG
CTGTTGGGTTTTGGGACTACCATTCTTTTATAACCGCTGCTGCTTTATAT
CAGCCTCATGGGTTTGGTACCAGTGCAGGAAAGCTCATGGGTCAAAAGGA
AGTTGCTGCTTTTCTTGGCCACGTTGGAAGCAAAACCTCGTGTGGGTATG
GAGTGGCAACTGGTGGACCATTGGCTTGGGGTCTATGCTACAACAAGGAG
ATGAGTCCTAACCAGATATACTGCGATGATGACTTCAAATACACATATCC
TTGCACTCCTGGAGTTTCATATCATGGCCGCGGTGCCTTGCCCCTCTACT
GGAACTACAACTATGGGGAAACAGGAGAGCCCCTAAAGTTGATATATTGA
ACCACCCCGAATAACTTAAAAAACAATGCGACCCTAACCTTTTCAGGCAG
CAATGTGGAAGTGGATGACTCCAATGAANAAACATTAGCCCGCGGCGCAC
GACCCGTTCGTTGGTAACTGGAAACCTACCAAGAATGAACCTTGGGCCAA
AAGGGGGCTTGGATTCGGCCCAACCATGAAGGTCCTGAATGGGGGACCAG
TTGTGGGCA
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