EY684638

Overview
NameEY684638
Unique NameEY684638
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length851
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684638 vs. ExPASy Swiss-Prot
Match: TRPC_BURTA (Indole-3-glycerol phosphate synthase OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=trpC PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.718e-38
Identity = 83/137 (60.58%), Postives = 103/137 (75.18%), Query Frame = 1
Query:    1 PYQIVEARALGADCVLLIVSALDDVKMAELAAVAKSVGLDVLVEVHDGDELERALKTLDTPLVGVNNRNLHTFEVSLENTXXXXXXXXXXXXVITESGIVNRADVELMEISGVYSFLVGETFMRAENPGAELQRLFF 411
            PYQ++EARA+GAD +LLI +ALD   M +L A A S+GL VLVEVH+ DEL  AL+ L TPLVG+NNRNL TFE +++ T            V+TESGI++RADVE ME +GV++FLVGE FMRAENPGAEL R+FF
Sbjct:  126 PYQVLEARAMGADAILLIAAALDTPLMVDLEAYAHSLGLAVLVEVHNRDELSAALE-LKTPLVGINNRNLRTFETTIDTTLGMLDAIPDDRIVVTESGILSRADVERMEAAGVHTFLVGEAFMRAENPGAELARMFF 261          
BLAST of EY684638 vs. ExPASy Swiss-Prot
Match: TRPC_XANOP (Indole-3-glycerol phosphate synthase OS=Xanthomonas oryzae pv. oryzae (strain PXO99A) GN=trpC PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.931e-38
Identity = 80/137 (58.39%), Postives = 104/137 (75.91%), Query Frame = 1
Query:    1 PYQIVEARALGADCVLLIVSALDDVKMAELAAVAKSVGLDVLVEVHDGDELERALKTLDTPLVGVNNRNLHTFEVSLENTXXXXXXXXXXXXVITESGIVNRADVELMEISGVYSFLVGETFMRAENPGAELQRLFF 411
            PYQ+ EAR LGADC+LLIVSAL+D ++A+L+ +A  +GLDVLVEVHD DELERA++ +  PL+G+NNRNL TFEV+L+ T            ++TESGIV +ADV+LM  + V +FLVGETFMRA  PG  L++LFF
Sbjct:  127 PYQVYEARVLGADCILLIVSALEDAQLADLSGLAMQLGLDVLVEVHDVDELERAVQ-VPVPLIGINNRNLRTFEVTLQTTLDMRAAVPRDRVLVTESGIVTQADVQLMRSNDVNAFLVGETFMRAAEPGESLRQLFF 262          
BLAST of EY684638 vs. ExPASy Swiss-Prot
Match: TRPC_XANOM (Indole-3-glycerol phosphate synthase OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN=trpC PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 6.530e-38
Identity = 80/137 (58.39%), Postives = 103/137 (75.18%), Query Frame = 1
Query:    1 PYQIVEARALGADCVLLIVSALDDVKMAELAAVAKSVGLDVLVEVHDGDELERALKTLDTPLVGVNNRNLHTFEVSLENTXXXXXXXXXXXXVITESGIVNRADVELMEISGVYSFLVGETFMRAENPGAELQRLFF 411
            PYQ+ EAR LGADC+LLIVSAL D ++A+L+ +A  +GLDVLVEVHD DELERA++ +  PL+G+NNRNL TFEV+L+ T            ++TESGIV +ADV+LM  + V +FLVGETFMRA  PG  L++LFF
Sbjct:  127 PYQVYEARVLGADCILLIVSALKDAQLADLSGLAMQLGLDVLVEVHDVDELERAVQ-VPVPLIGINNRNLRTFEVTLQTTLDMRAAVPRDRVLVTESGIVTQADVQLMRSNDVNAFLVGETFMRAAEPGESLRQLFF 262          
BLAST of EY684638 vs. ExPASy Swiss-Prot
Match: TRPC_XANC5 (Indole-3-glycerol phosphate synthase OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=trpC PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 6.530e-38
Identity = 80/137 (58.39%), Postives = 103/137 (75.18%), Query Frame = 1
Query:    1 PYQIVEARALGADCVLLIVSALDDVKMAELAAVAKSVGLDVLVEVHDGDELERALKTLDTPLVGVNNRNLHTFEVSLENTXXXXXXXXXXXXVITESGIVNRADVELMEISGVYSFLVGETFMRAENPGAELQRLFF 411
            PYQ+ EAR LGADC+LLIVSAL+D ++A+L+ +A  +GLDVLVEVHD DELERA++ +  PL+G+NNRNL TFEV+L+ T            ++TESGIV +ADV+LM    V +FLVGETFMRA  PG  L++LFF
Sbjct:  127 PYQVYEARVLGADCILLIVSALEDAQLADLSGLAMQLGLDVLVEVHDIDELERAVQ-VPVPLIGINNRNLRTFEVTLQTTLDMRAAVPRDRVLVTESGIVTQADVQLMRSHDVNAFLVGETFMRAAEPGESLRQLFF 262          
BLAST of EY684638 vs. ExPASy Swiss-Prot
Match: TRPC_BURP6 (Indole-3-glycerol phosphate synthase OS=Burkholderia pseudomallei (strain 668) GN=trpC PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 1.114e-37
Identity = 82/136 (60.29%), Postives = 102/136 (75.00%), Query Frame = 1
Query:    4 YQIVEARALGADCVLLIVSALDDVKMAELAAVAKSVGLDVLVEVHDGDELERALKTLDTPLVGVNNRNLHTFEVSLENTXXXXXXXXXXXXVITESGIVNRADVELMEISGVYSFLVGETFMRAENPGAELQRLFF 411
            YQ++EARA+GAD +LLI +ALD   M +L A A S+GL VLVEVH+  EL+ ALK L TPLVG+NNRNL TFE +++ T            V+TESGI++RADVE ME +GV++FLVGE FMRAENPGAEL R+FF
Sbjct:  127 YQVLEARAMGADAILLIAAALDTPLMIDLEAYAHSLGLAVLVEVHNRSELDEALK-LKTPLVGINNRNLRTFETTIDTTLGMLDAIPDDRIVVTESGILSRADVERMEAAGVHTFLVGEAFMRAENPGAELARMFF 261          
BLAST of EY684638 vs. ExPASy Swiss-Prot
Match: TRPC_BURPS (Indole-3-glycerol phosphate synthase OS=Burkholderia pseudomallei GN=trpC PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.455e-37
Identity = 82/136 (60.29%), Postives = 102/136 (75.00%), Query Frame = 1
Query:    4 YQIVEARALGADCVLLIVSALDDVKMAELAAVAKSVGLDVLVEVHDGDELERALKTLDTPLVGVNNRNLHTFEVSLENTXXXXXXXXXXXXVITESGIVNRADVELMEISGVYSFLVGETFMRAENPGAELQRLFF 411
            YQ++EARA+GAD +LLI +ALD   M +L A A S+GL VLVEVH+  EL+ ALK L TPLVG+NNRNL TFE +++ T            V+TESGI++RADVE ME +GV++FLVGE FMRAENPGAEL R+FF
Sbjct:  127 YQVLEARAMGADAILLIAAALDTPLMIDLEAYAHSLGLAVLVEVHNRGELDEALK-LKTPLVGINNRNLRTFETTIDTTLGMLDAIPDDRIVVTESGILSRADVERMEAAGVHTFLVGEAFMRAENPGAELARMFF 261          
BLAST of EY684638 vs. ExPASy Swiss-Prot
Match: TRPC_BURP1 (Indole-3-glycerol phosphate synthase OS=Burkholderia pseudomallei (strain 1710b) GN=trpC PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.455e-37
Identity = 82/136 (60.29%), Postives = 102/136 (75.00%), Query Frame = 1
Query:    4 YQIVEARALGADCVLLIVSALDDVKMAELAAVAKSVGLDVLVEVHDGDELERALKTLDTPLVGVNNRNLHTFEVSLENTXXXXXXXXXXXXVITESGIVNRADVELMEISGVYSFLVGETFMRAENPGAELQRLFF 411
            YQ++EARA+GAD +LLI +ALD   M +L A A S+GL VLVEVH+  EL+ ALK L TPLVG+NNRNL TFE +++ T            V+TESGI++RADVE ME +GV++FLVGE FMRAENPGAEL R+FF
Sbjct:  127 YQVLEARAMGADAILLIAAALDTPLMIDLEAYAHSLGLAVLVEVHNRGELDEALK-LKTPLVGINNRNLRTFETTIDTTLGMLDAIPDDRIVVTESGILSRADVERMEAAGVHTFLVGEAFMRAENPGAELARMFF 261          
BLAST of EY684638 vs. ExPASy Swiss-Prot
Match: TRPC_BURP0 (Indole-3-glycerol phosphate synthase OS=Burkholderia pseudomallei (strain 1106a) GN=trpC PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.455e-37
Identity = 82/136 (60.29%), Postives = 102/136 (75.00%), Query Frame = 1
Query:    4 YQIVEARALGADCVLLIVSALDDVKMAELAAVAKSVGLDVLVEVHDGDELERALKTLDTPLVGVNNRNLHTFEVSLENTXXXXXXXXXXXXVITESGIVNRADVELMEISGVYSFLVGETFMRAENPGAELQRLFF 411
            YQ++EARA+GAD +LLI +ALD   M +L A A S+GL VLVEVH+  EL+ ALK L TPLVG+NNRNL TFE +++ T            V+TESGI++RADVE ME +GV++FLVGE FMRAENPGAEL R+FF
Sbjct:  127 YQVLEARAMGADAILLIAAALDTPLMIDLEAYAHSLGLAVLVEVHNRGELDEALK-LKTPLVGINNRNLRTFETTIDTTLGMLDAIPDDRIVVTESGILSRADVERMEAAGVHTFLVGEAFMRAENPGAELARMFF 261          
BLAST of EY684638 vs. ExPASy Swiss-Prot
Match: TRPC_XANAC (Indole-3-glycerol phosphate synthase OS=Xanthomonas axonopodis pv. citri GN=trpC PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 3.241e-37
Identity = 79/137 (57.66%), Postives = 102/137 (74.45%), Query Frame = 1
Query:    1 PYQIVEARALGADCVLLIVSALDDVKMAELAAVAKSVGLDVLVEVHDGDELERALKTLDTPLVGVNNRNLHTFEVSLENTXXXXXXXXXXXXVITESGIVNRADVELMEISGVYSFLVGETFMRAENPGAELQRLFF 411
            PYQ+ EAR LGADC+LLIVSAL+D ++A+L+ +A  +GLDVLVEVHD DELERA++ +  PL+G+NNRNL TFEV+L+ T            ++TESGIV +ADV+ M    V +FLVGETFMRA  PG  L++LFF
Sbjct:  127 PYQVYEARVLGADCILLIVSALEDAQLADLSGLAMQLGLDVLVEVHDIDELERAVQ-VPVPLIGINNRNLRTFEVTLQTTLDMRSAVPRDRVLVTESGIVTQADVQRMRSHDVNAFLVGETFMRAAEPGESLRQLFF 262          
BLAST of EY684638 vs. ExPASy Swiss-Prot
Match: TRPC_BURMS (Indole-3-glycerol phosphate synthase OS=Burkholderia mallei (strain SAVP1) GN=trpC PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 5.528e-37
Identity = 81/136 (59.56%), Postives = 101/136 (74.26%), Query Frame = 1
Query:    4 YQIVEARALGADCVLLIVSALDDVKMAELAAVAKSVGLDVLVEVHDGDELERALKTLDTPLVGVNNRNLHTFEVSLENTXXXXXXXXXXXXVITESGIVNRADVELMEISGVYSFLVGETFMRAENPGAELQRLFF 411
            YQ++EARA+GAD +LLI +ALD   M +L A A S+GL VLVEVH+  EL+ ALK L TP VG+NNRNL TFE +++ T            V+TESGI++RADVE ME +GV++FLVGE FMRAENPGAEL R+FF
Sbjct:  127 YQLLEARAMGADAILLIAAALDTPLMIDLEAYAHSLGLAVLVEVHNRGELDEALK-LKTPFVGINNRNLRTFETTIDTTLGMLDAIPDDRIVVTESGILSRADVERMEAAGVHTFLVGEAFMRAENPGAELARMFF 261          
The following BLAST results are available for this feature:
BLAST of EY684638 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 383
Match NameE-valueIdentityDescription
TRPC_BURTA1.718e-3860.58Indole-3-glycerol phosphate synthase OS=Burkholder... [more]
TRPC_XANOP2.931e-3858.39Indole-3-glycerol phosphate synthase OS=Xanthomona... [more]
TRPC_XANOM6.530e-3858.39Indole-3-glycerol phosphate synthase OS=Xanthomona... [more]
TRPC_XANC56.530e-3858.39Indole-3-glycerol phosphate synthase OS=Xanthomona... [more]
TRPC_BURP61.114e-3760.29Indole-3-glycerol phosphate synthase OS=Burkholder... [more]
TRPC_BURPS1.455e-3760.29Indole-3-glycerol phosphate synthase OS=Burkholder... [more]
TRPC_BURP11.455e-3760.29Indole-3-glycerol phosphate synthase OS=Burkholder... [more]
TRPC_BURP01.455e-3760.29Indole-3-glycerol phosphate synthase OS=Burkholder... [more]
TRPC_XANAC3.241e-3757.66Indole-3-glycerol phosphate synthase OS=Xanthomona... [more]
TRPC_BURMS5.528e-3759.56Indole-3-glycerol phosphate synthase OS=Burkholder... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-015-E11-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684638 ID=EY684638; Name=EY684638; organism=Citrus sinensis; type=EST; length=851bp
CCCTACCAGATCGTCGAAGCTCGTGCCTTGGGCGCCGATTGCGTGCTGTT
GATCGTCTCCGCACTGGATGACGTGAAGATGGCCGAACTGGCGGCCGTGG
CCAAAAGCGTCGGCCTCGACGTGCTGGTGGAAGTGCACGACGGTGATGAA
CTGGAACGCGCGTTGAAAACCCTCGACACACCGTTGGTGGGCGTCAACAA
CCGCAACCTGCACACGTTTGAAGTCAGCCTGGAAAACACCCTCGACCTGT
TGCCGCGTATCCCGCGTGACCGGTTGGTGATTACCGAAAGTGGCATCGTC
AATCGCGCCGATGTCGAACTGATGGAAATCAGCGGCGTGTACTCGTTCCT
CGTCGGCGAAACCTTCATGCGTGCCGAGAACCCGGGGGCTGAATTGCAGC
GCCTGTTCTTCCCGGAGCGTGGCGTTGCTGTCAGCGGTTCGACCCTGGAT
TGATGATGACCCAGCCGGTGGCGATGACGGTCGAGGCAGGCCTTAAGGCC
GAGCAGGATTTGCTCGCCGCTGTCTGCGCGGGGGAGCAGCCGTTCGGCCT
GCTGTTCTGGCAGCCCAGCGATCCAACGTTGGTGATGCCTCCGCGTTTGA
GCCGACTTCCGGCATTCGAGACGCGCAGTCAGGTATCCGGCACGAGGCCG
GTTGCCCGGGGCTGCGTGCGGGAAGACGGCGGTGGACTGGGACCGGCACG
AAGAGGCGACGGACGAACCGTCCCTGGCGGGAGCGCAAGCAGCGGGGAGG
GCGTGAGCGAGGGGGGTCGCGAGCGGAGAGGGAGGGTTGTAAACGTGCAT
CCGGCGGCCCGCAACCCAACGGGGGAGCCGCCCCACCGGCCGCATGGGGG
G
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