EY684638

Overview
NameEY684638
Unique NameEY684638
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length851
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684638 vs. ExPASy Swiss-Prot
Match: TRPC_BURMA (Indole-3-glycerol phosphate synthase OS=Burkholderia mallei GN=trpC PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 5.528e-37
Identity = 81/136 (59.56%), Postives = 101/136 (74.26%), Query Frame = 1
Query:    4 YQIVEARALGADCVLLIVSALDDVKMAELAAVAKSVGLDVLVEVHDGDELERALKTLDTPLVGVNNRNLHTFEVSLENTXXXXXXXXXXXXVITESGIVNRADVELMEISGVYSFLVGETFMRAENPGAELQRLFF 411
            YQ++EARA+GAD +LLI +ALD   M +L A A S+GL VLVEVH+  EL+ ALK L TP VG+NNRNL TFE +++ T            V+TESGI++RADVE ME +GV++FLVGE FMRAENPGAEL R+FF
Sbjct:  127 YQLLEARAMGADAILLIAAALDTPLMIDLEAYAHSLGLAVLVEVHNRGELDEALK-LKTPFVGINNRNLRTFETTIDTTLGMLDAIPDDRIVVTESGILSRADVERMEAAGVHTFLVGEAFMRAENPGAELARMFF 261          
BLAST of EY684638 vs. ExPASy Swiss-Prot
Match: TRPC_BURM9 (Indole-3-glycerol phosphate synthase OS=Burkholderia mallei (strain NCTC 10229) GN=trpC PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 5.528e-37
Identity = 81/136 (59.56%), Postives = 101/136 (74.26%), Query Frame = 1
Query:    4 YQIVEARALGADCVLLIVSALDDVKMAELAAVAKSVGLDVLVEVHDGDELERALKTLDTPLVGVNNRNLHTFEVSLENTXXXXXXXXXXXXVITESGIVNRADVELMEISGVYSFLVGETFMRAENPGAELQRLFF 411
            YQ++EARA+GAD +LLI +ALD   M +L A A S+GL VLVEVH+  EL+ ALK L TP VG+NNRNL TFE +++ T            V+TESGI++RADVE ME +GV++FLVGE FMRAENPGAEL R+FF
Sbjct:  127 YQLLEARAMGADAILLIAAALDTPLMIDLEAYAHSLGLAVLVEVHNRGELDEALK-LKTPFVGINNRNLRTFETTIDTTLGMLDAIPDDRIVVTESGILSRADVERMEAAGVHTFLVGEAFMRAENPGAELARMFF 261          
BLAST of EY684638 vs. ExPASy Swiss-Prot
Match: TRPC_BURM7 (Indole-3-glycerol phosphate synthase OS=Burkholderia mallei (strain NCTC 10247) GN=trpC PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 5.528e-37
Identity = 81/136 (59.56%), Postives = 101/136 (74.26%), Query Frame = 1
Query:    4 YQIVEARALGADCVLLIVSALDDVKMAELAAVAKSVGLDVLVEVHDGDELERALKTLDTPLVGVNNRNLHTFEVSLENTXXXXXXXXXXXXVITESGIVNRADVELMEISGVYSFLVGETFMRAENPGAELQRLFF 411
            YQ++EARA+GAD +LLI +ALD   M +L A A S+GL VLVEVH+  EL+ ALK L TP VG+NNRNL TFE +++ T            V+TESGI++RADVE ME +GV++FLVGE FMRAENPGAEL R+FF
Sbjct:  127 YQLLEARAMGADAILLIAAALDTPLMIDLEAYAHSLGLAVLVEVHNRGELDEALK-LKTPFVGINNRNLRTFETTIDTTLGMLDAIPDDRIVVTESGILSRADVERMEAAGVHTFLVGEAFMRAENPGAELARMFF 261          
BLAST of EY684638 vs. ExPASy Swiss-Prot
Match: TRPC_STRM5 (Indole-3-glycerol phosphate synthase OS=Stenotrophomonas maltophilia (strain R551-3) GN=trpC PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 7.220e-37
Identity = 78/136 (57.35%), Postives = 101/136 (74.26%), Query Frame = 1
Query:    4 YQIVEARALGADCVLLIVSALDDVKMAELAAVAKSVGLDVLVEVHDGDELERALKTLDTPLVGVNNRNLHTFEVSLENTXXXXXXXXXXXXVITESGIVNRADVELMEISGVYSFLVGETFMRAENPGAELQRLFF 411
            YQ+ EAR LGADC+LLIV+ALDD ++A L+ +A S+G+DVLVEVHD DELERAL+ +  P++G+NNRNL TFEVSL+ T            ++TESGI+   DV LM  +G++SFLVGE FMR E PG  L++LFF
Sbjct:  128 YQVYEARVLGADCILLIVAALDDTQLATLSELAMSLGMDVLVEVHDIDELERALQ-VPAPMIGINNRNLRTFEVSLQTTLDMQKAVPRDRLLVTESGILGPQDVALMRDAGIHSFLVGEAFMRVEEPGEGLRQLFF 262          
BLAST of EY684638 vs. ExPASy Swiss-Prot
Match: TRPC_BURXL (Indole-3-glycerol phosphate synthase OS=Burkholderia xenovorans (strain LB400) GN=trpC PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.608e-36
Identity = 80/137 (58.39%), Postives = 99/137 (72.26%), Query Frame = 1
Query:    1 PYQIVEARALGADCVLLIVSALDDVKMAELAAVAKSVGLDVLVEVHDGDELERALKTLDTPLVGVNNRNLHTFEVSLENTXXXXXXXXXXXXVITESGIVNRADVELMEISGVYSFLVGETFMRAENPGAELQRLFF 411
            PYQIVEARA+GAD +LLI +AL+  +M +L A+A S+GL VLVEVHD DEL  AL TL TPL+G+NNRNL TFE S+E T            V+TESGI++R DVE +    V++FLVGE FMRA+ PG EL R+FF
Sbjct:  126 PYQIVEARAMGADAILLIAAALETSQMQDLEALAHSLGLAVLVEVHDRDELMEAL-TLKTPLIGINNRNLRTFETSIETTIGMLEAIPDDRIVVTESGILSRVDVERLRAMDVHTFLVGEAFMRADEPGVELARMFF 261          
BLAST of EY684638 vs. ExPASy Swiss-Prot
Match: TRPC_STRMK (Indole-3-glycerol phosphate synthase OS=Stenotrophomonas maltophilia (strain K279a) GN=trpC PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 2.101e-36
Identity = 77/136 (56.62%), Postives = 101/136 (74.26%), Query Frame = 1
Query:    4 YQIVEARALGADCVLLIVSALDDVKMAELAAVAKSVGLDVLVEVHDGDELERALKTLDTPLVGVNNRNLHTFEVSLENTXXXXXXXXXXXXVITESGIVNRADVELMEISGVYSFLVGETFMRAENPGAELQRLFF 411
            YQ+ EAR LGADC+LLIV+ALDD ++A L+ +A S+G+DVLVEVHD DELERAL+ +  P++G+NNRNL TFEVSL+ T            ++TESGI+   DV LM  +G+++FLVGE FMR E PG  L++LFF
Sbjct:  128 YQVYEARVLGADCILLIVAALDDTQLATLSELALSLGMDVLVEVHDIDELERALQ-VPAPMIGINNRNLRTFEVSLQTTLDMQQAVPRDRLLVTESGILGLQDVALMRDAGIHAFLVGEAFMRVEEPGEGLRQLFF 262          
BLAST of EY684638 vs. ExPASy Swiss-Prot
Match: TRPC_BURPP (Indole-3-glycerol phosphate synthase OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=trpC PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 2.101e-36
Identity = 80/137 (58.39%), Postives = 99/137 (72.26%), Query Frame = 1
Query:    1 PYQIVEARALGADCVLLIVSALDDVKMAELAAVAKSVGLDVLVEVHDGDELERALKTLDTPLVGVNNRNLHTFEVSLENTXXXXXXXXXXXXVITESGIVNRADVELMEISGVYSFLVGETFMRAENPGAELQRLFF 411
            PYQIVEARA+GAD +LLI +AL+  +M +L A+A S+GL VLVEVHD DEL  +L TL TPL+G+NNRNL TFE S+E T            V+TESGI++RADVE +    V++FLVGE FMRA  PG EL R+FF
Sbjct:  126 PYQIVEARAMGADAILLIAAALETSQMQDLEALAHSLGLAVLVEVHDHDELMESL-TLKTPLIGINNRNLRTFETSIETTIGMLEAIPDDRIVVTESGILSRADVERLRAMDVHTFLVGEAFMRANEPGVELARMFF 261          
BLAST of EY684638 vs. ExPASy Swiss-Prot
Match: TRPC1_RALSO (Indole-3-glycerol phosphate synthase 1 OS=Ralstonia solanacearum GN=trpC1 PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 3.583e-36
Identity = 82/135 (60.74%), Postives = 96/135 (71.11%), Query Frame = 1
Query:    4 YQIVEARALGADCVLLIVSALDDVKMAELAAVAKSVGLDVLVEVHDGDELERALKTLDTPLVGVNNRNLHTFEVSLENTXXXXXXXXXXXXVITESGIVNRADVELMEISGVYSFLVGETFMRAENPGAELQRLF 408
            YQ+ EAR+ GADC+LLIVSALD   MAEL A A  +G+DVLVEVHDG ELERAL+ L TPLVGVNNRNL TFE +L+ T            V+TESGI+   DV  M  + V +FLVGE FMRA++PG EL RLF
Sbjct:  133 YQVYEARSWGADCILLIVSALDQGLMAELEACAHELGMDVLVEVHDGHELERALR-LSTPLVGVNNRNLRTFETTLDTTLGLLKHMPDDRIVVTESGILKPDDVRKMRAADVNAFLVGEAFMRADDPGTELARLF 266          
BLAST of EY684638 vs. ExPASy Swiss-Prot
Match: TRPC_BURP8 (Indole-3-glycerol phosphate synthase OS=Burkholderia phymatum (strain DSM 17167 / STM815) GN=trpC PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 4.680e-36
Identity = 81/137 (59.12%), Postives = 98/137 (71.53%), Query Frame = 1
Query:    1 PYQIVEARALGADCVLLIVSALDDVKMAELAAVAKSVGLDVLVEVHDGDELERALKTLDTPLVGVNNRNLHTFEVSLENTXXXXXXXXXXXXVITESGIVNRADVELMEISGVYSFLVGETFMRAENPGAELQRLFF 411
            PYQI+EARA+GAD +LLIV+AL+  +M +L A A S+GL VLVEVHD DEL  AL TL TPL+GVNNRNL TFE S++ T            V+TESGI++R DVE M    V +FLVGE FMRA+ PG EL R+FF
Sbjct:  126 PYQILEARAMGADAILLIVAALETSQMQDLEAYAHSLGLAVLVEVHDKDELVEAL-TLKTPLIGVNNRNLRTFETSIDTTLGLLDMMPDDRIVVTESGILSRTDVERMRAMDVNTFLVGEAFMRADEPGVELARMFF 261          
BLAST of EY684638 vs. ExPASy Swiss-Prot
Match: TRPC_DELAS (Indole-3-glycerol phosphate synthase OS=Delftia acidovorans (strain DSM 14801 / SPH-1) GN=trpC PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 6.112e-36
Identity = 77/136 (56.62%), Postives = 100/136 (73.53%), Query Frame = 1
Query:    1 PYQIVEARALGADCVLLIVSALDDVKMAELAAVAKSVGLDVLVEVHDGDELERALKTLDTPLVGVNNRNLHTFEVSLENTXXXXXXXXXXXXVITESGIVNRADVELMEISGVYSFLVGETFMRAENPGAELQRLF 408
            PYQI E+RA+GADCVLLI + LDD +MAE+  +A S+ + VLVEVHDG EL+RAL+ L TPLVG+NNRNL +FEVS++ T            ++TESGI +R DV+ M  +G++SFLVGE FMRA+ PG  L +LF
Sbjct:  132 PYQIYESRAMGADCVLLIAACLDDAQMAEMEQIAHSLDMAVLVEVHDGAELDRALR-LKTPLVGINNRNLRSFEVSIQTTLDLQKNVPADRLLVTESGIGSREDVKAMRDAGIHSFLVGEAFMRAKEPGEALAKLF 266          
The following BLAST results are available for this feature:
BLAST of EY684638 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 383
Match NameE-valueIdentityDescription
TRPC_BURMA5.528e-3759.56Indole-3-glycerol phosphate synthase OS=Burkholder... [more]
TRPC_BURM95.528e-3759.56Indole-3-glycerol phosphate synthase OS=Burkholder... [more]
TRPC_BURM75.528e-3759.56Indole-3-glycerol phosphate synthase OS=Burkholder... [more]
TRPC_STRM57.220e-3757.35Indole-3-glycerol phosphate synthase OS=Stenotroph... [more]
TRPC_BURXL1.608e-3658.39Indole-3-glycerol phosphate synthase OS=Burkholder... [more]
TRPC_STRMK2.101e-3656.62Indole-3-glycerol phosphate synthase OS=Stenotroph... [more]
TRPC_BURPP2.101e-3658.39Indole-3-glycerol phosphate synthase OS=Burkholder... [more]
TRPC1_RALSO3.583e-3660.74Indole-3-glycerol phosphate synthase 1 OS=Ralstoni... [more]
TRPC_BURP84.680e-3659.12Indole-3-glycerol phosphate synthase OS=Burkholder... [more]
TRPC_DELAS6.112e-3656.62Indole-3-glycerol phosphate synthase OS=Delftia ac... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-015-E11-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684638 ID=EY684638; Name=EY684638; organism=Citrus sinensis; type=EST; length=851bp
CCCTACCAGATCGTCGAAGCTCGTGCCTTGGGCGCCGATTGCGTGCTGTT
GATCGTCTCCGCACTGGATGACGTGAAGATGGCCGAACTGGCGGCCGTGG
CCAAAAGCGTCGGCCTCGACGTGCTGGTGGAAGTGCACGACGGTGATGAA
CTGGAACGCGCGTTGAAAACCCTCGACACACCGTTGGTGGGCGTCAACAA
CCGCAACCTGCACACGTTTGAAGTCAGCCTGGAAAACACCCTCGACCTGT
TGCCGCGTATCCCGCGTGACCGGTTGGTGATTACCGAAAGTGGCATCGTC
AATCGCGCCGATGTCGAACTGATGGAAATCAGCGGCGTGTACTCGTTCCT
CGTCGGCGAAACCTTCATGCGTGCCGAGAACCCGGGGGCTGAATTGCAGC
GCCTGTTCTTCCCGGAGCGTGGCGTTGCTGTCAGCGGTTCGACCCTGGAT
TGATGATGACCCAGCCGGTGGCGATGACGGTCGAGGCAGGCCTTAAGGCC
GAGCAGGATTTGCTCGCCGCTGTCTGCGCGGGGGAGCAGCCGTTCGGCCT
GCTGTTCTGGCAGCCCAGCGATCCAACGTTGGTGATGCCTCCGCGTTTGA
GCCGACTTCCGGCATTCGAGACGCGCAGTCAGGTATCCGGCACGAGGCCG
GTTGCCCGGGGCTGCGTGCGGGAAGACGGCGGTGGACTGGGACCGGCACG
AAGAGGCGACGGACGAACCGTCCCTGGCGGGAGCGCAAGCAGCGGGGAGG
GCGTGAGCGAGGGGGGTCGCGAGCGGAGAGGGAGGGTTGTAAACGTGCAT
CCGGCGGCCCGCAACCCAACGGGGGAGCCGCCCCACCGGCCGCATGGGGG
G
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