EY684638

Overview
NameEY684638
Unique NameEY684638
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length851
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684638 vs. ExPASy Swiss-Prot
Match: TRPC_ECOLI (Tryptophan biosynthesis protein trpCF OS=Escherichia coli (strain K12) GN=trpC PE=1 SV=3)

HSP 1 Score: 79.337 bits (194), Expect = 2.952e-14
Identity = 55/143 (38.46%), Postives = 76/143 (53.15%), Query Frame = 1
Query:    1 PYQIVEARALGADCVLLIVSALDDVKMAELAAVAKSVGLDVLVEVHDGDELERALKTLDTPLVGVNNRNLHTFEVSLENTXXXXXXXXXXXXVITESGIVNRADV-ELMEISGVYSFLVGETFMRAENPGAELQRLFFPERGV 426
            PYQI  AR   AD  LL++S LDD +  +LAAVA S+ + VL EV + +E ERA+  L   +VG+NNR+L    + L  T            VI+ESGI   A V EL   +    FL+G   M  ++  A ++R+   E  V
Sbjct:  120 PYQIYLARYYQADACLLMLSVLDDDQYRQLAAVAHSLEMGVLTEVSNEEEQERAI-ALGAKVVGINNRDLRDLSIDLNRTRELAPKLGHNVTVISESGINTYAQVRELSHFAN--GFLIGSALMAHDDLHAAVRRVLLGENKV 259          
BLAST of EY684638 vs. ExPASy Swiss-Prot
Match: TRPC_CHLL2 (Indole-3-glycerol phosphate synthase OS=Chlorobium limicola (strain DSM 245 / NBRC 103803) GN=trpC PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.952e-14
Identity = 44/118 (37.29%), Postives = 68/118 (57.63%), Query Frame = 1
Query:    7 QIVEARALGADCVLLIVSALDDVKMAELAAVAKSVGLDVLVEVHDGDELERALKTLDTPLVGVNNRNLHTFEVSLENTXXXXXXXXXXXXVITESGIVNRADVELMEISGVYSFLVGE 360
            QI E+R +GAD +LLIV+AL+  ++ +   +A  +GL VLVEVHD  EL+ A +     ++GVNNRNL  F VSL+               + ESG+ +  D++ +  +   + L+GE
Sbjct:  126 QIFESRLIGADAILLIVAALEASQLRDYLQLAAEIGLAVLVEVHDRQELDTAAEA-GAGIIGVNNRNLKDFSVSLDTAIDLRPHFPEGVIAVAESGLKSADDIQRIGQASFDAVLIGE 242          
BLAST of EY684638 vs. ExPASy Swiss-Prot
Match: TRPC_BACCQ (Indole-3-glycerol phosphate synthase OS=Bacillus cereus (strain Q1) GN=trpC PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.952e-14
Identity = 49/126 (38.89%), Postives = 72/126 (57.14%), Query Frame = 1
Query:    7 QIVEARALGADCVLLIVSALDDVKMAELAAVAKSVGLDVLVEVHDGDELERALKTLDTPLVGVNNRNLHTFEVSLENTXXXXXXXXXXXXV-ITESGIVNRADVELMEISGVYSFLVGETFMRAEN 381
            QI  A   GAD +LLIV+AL   K+ EL +     GL+ +VEVHD  ELE A++  +  ++G+NNRNL TFEV L  T            + I+ESG+ ++ D+  ++ +G    LVGE  M + +
Sbjct:  117 QIDRAYEAGADIILLIVAALTKEKLKELYSYVLEKGLEAIVEVHDEQELEIAIQ-FNPHVIGINNRNLKTFEVDLSQTEKLGKRLNEEKLLWISESGVHSKEDMIRVKRAGAKGVLVGEALMTSSS 241          
BLAST of EY684638 vs. ExPASy Swiss-Prot
Match: TRPC_BACC7 (Indole-3-glycerol phosphate synthase OS=Bacillus cereus (strain AH187) GN=trpC PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.952e-14
Identity = 49/126 (38.89%), Postives = 72/126 (57.14%), Query Frame = 1
Query:    7 QIVEARALGADCVLLIVSALDDVKMAELAAVAKSVGLDVLVEVHDGDELERALKTLDTPLVGVNNRNLHTFEVSLENTXXXXXXXXXXXXV-ITESGIVNRADVELMEISGVYSFLVGETFMRAEN 381
            QI  A   GAD +LLIV+AL   K+ EL +     GL+ +VEVHD  ELE A++  +  ++G+NNRNL TFEV L  T            + I+ESG+ ++ D+  ++ +G    LVGE  M + +
Sbjct:  117 QIDRAYEAGADIILLIVAALTKEKLKELYSYVLEKGLEAIVEVHDEQELEIAIQ-FNPHVIGINNRNLKTFEVDLSQTEKLGKRLNEEKLLWISESGVHSKEDMIRVKRAGAKGVLVGEALMTSSS 241          
BLAST of EY684638 vs. ExPASy Swiss-Prot
Match: TRPC_STRGC (Indole-3-glycerol phosphate synthase OS=Streptococcus gordonii (strain Challis / ATCC 35105 / CH1 / DL1 / V288) GN=trpC PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.855e-14
Identity = 49/133 (36.84%), Postives = 75/133 (56.39%), Query Frame = 1
Query:    7 QIVEARALGADCVLLIVSALDDVKMAELAAVAKSVGLDVLVEVHDGDELERALKTLDTPLVGVNNRNLHTFEVSLENTXXXXXXXXXXXXVITESGIVNRADVELMEISGVYSFLVGETFMRAENPGAELQRL 405
            QIV AR  GA  +LLIV+AL + ++ EL   A  +GL+VLVE H+  ELE A + +   ++GVNNRNL TFE  +  +             ++ES I ++ D E +     ++ LVG   M+AE+   +++ L
Sbjct:  120 QIVRARNAGATIILLIVAALSEKRLQELYDFATGLGLEVLVETHNLAELETAHR-IGARIIGVNNRNLVTFETDINTSLQLSAHFKDDRVYVSESAIFSKEDAEQV-APYFHAILVGTALMQAEDVAEKIKEL 250          
BLAST of EY684638 vs. ExPASy Swiss-Prot
Match: TRPC_CORGL (Tryptophan biosynthesis protein trpCF OS=Corynebacterium glutamicum GN=trpC PE=3 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 3.855e-14
Identity = 51/139 (36.69%), Postives = 73/139 (52.52%), Query Frame = 1
Query:    1 PYQIVEARALGADCVLLIVSALDDVKMAELAAVAKSVGLDVLVEVHDGDELERALKTLDTPLVGVNNRNLHTFEVSLENTXXXXXXXXXXXXVITESGIVNRADVELMEISGVYS--FLVGETFMRAENPGAELQRLFF 411
            P Q+  AR  GAD +LL++S LDD + A LAA A    LD+L EV D +E+ RA+K L   + GVN+RNLH   + L+ +            +++ESG+    D E +   G +S  FLVG      EN     + L +
Sbjct:  126 PVQVHAARYFGADAILLMLSVLDDEEYAALAAEAARFDLDILTEVIDEEEVARAIK-LGAKIFGVNHRNLHDLSIDLDRSRRLSKLIPADAVLVSESGV---RDTETVRQLGGHSNAFLVGSQLTSQENVDLAARELVY 260          
BLAST of EY684638 vs. ExPASy Swiss-Prot
Match: TRPC_BEUC1 (Indole-3-glycerol phosphate synthase OS=Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432) GN=trpC PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.855e-14
Identity = 49/128 (38.28%), Postives = 65/128 (50.78%), Query Frame = 1
Query:    1 PYQIVEARALGADCVLLIVSALDDVKMAELAAVAKSVGLDVLVEVHDGDELERALKTLDTPLVGVNNRNLHTFEVSLENTXXXXXXXXXXXXVITESGIVNRADVELMEISGVYSFLVGETFMRAENP 384
            PYQ+ EARA GAD VLLIV+AL+   +  L     S+G+  LVE HD  E  RA+      ++G+N RNLHT EV                  + ESG+    DV     +G  + LVGE+ +   NP
Sbjct:  123 PYQVWEARAHGADLVLLIVAALEQTVLTSLVERVHSLGMTALVEAHDVGEAHRAIDA-GARVLGINARNLHTLEVDRATFAEVVGVVPDGVVKVAESGVRGPHDVLEYARAGADAVLVGESLVTQGNP 249          
BLAST of EY684638 vs. ExPASy Swiss-Prot
Match: TRPC_STRMU (Indole-3-glycerol phosphate synthase OS=Streptococcus mutans GN=trpC PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.035e-14
Identity = 51/133 (38.35%), Postives = 75/133 (56.39%), Query Frame = 1
Query:    7 QIVEARALGADCVLLIVSALDDVKMAELAAVAKSVGLDVLVEVHDGDELERALKTLDTPLVGVNNRNLHTFEVSLENTXXXXXXXXXXXXVITESGIVNRADVELMEISGVYSFLVGETFMRAENPGAELQRL 405
            QIV +R  GA  +LLIV+AL + ++ EL   A  +GL+VLVE H+  ELE A + +   ++GVNNRNL TFEV +  +             I+ESGI    D +L+      + LVG   M+A+N   +++ L
Sbjct:  120 QIVRSRNAGATVILLIVAALPEKRLKELYDFAAGLGLEVLVETHNLSELEIAHR-IGAQIIGVNNRNLVTFEVDINTSLELSTHFRDDKVYISESGIFTGQDSKLV-APYFNAILVGTALMQADNVADKVKEL 250          
BLAST of EY684638 vs. ExPASy Swiss-Prot
Match: TRPC_BUCAP (Tryptophan biosynthesis protein trpCF OS=Buchnera aphidicola subsp. Schizaphis graminum GN=trpC PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.035e-14
Identity = 47/142 (33.10%), Postives = 81/142 (57.04%), Query Frame = 1
Query:    4 YQIVEARALGADCVLLIVSALDDVKMAELAAVAKSVGLDVLVEVHDGDELERALKTLDTPLVGVNNRNLHTFEVSLENTXXXXXXXXXXXXVITESGIVNRADVELMEISG-VYSFLVGETFMRAENPGAELQRLFFPERGV 426
            YQ+  AR   AD +LL++S L+D +  EL+ +AK + + VL E+++  EL+RA+K L+  ++G+NNRNLH   + L  T            +++ESGI  + + ++ E+S  V+ FL+G + M   N    ++ L   +  V
Sbjct:  122 YQVYLARYYSADAILLMLSVLNDSQYLELSRIAKELNMGVLTEINNIKELKRAIK-LNASVIGINNRNLHDLSIDLNRT-RTLSPLIKNKIIVSESGI--KKNHQIKELSNIVHGFLIGSSLMYRTNLETNIKSLIIGDNKV 259          
BLAST of EY684638 vs. ExPASy Swiss-Prot
Match: TRPC_SULTO (Indole-3-glycerol phosphate synthase OS=Sulfolobus tokodaii GN=trpC PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.576e-14
Identity = 49/130 (37.69%), Postives = 73/130 (56.15%), Query Frame = 1
Query:    7 QIVEARALGADCVLLIVSALDDVKMAELAAVAKSVGLDVLVEVHDGDELERALKTLDTPLVGVNNRNLHTFEVSLENTXXXXXXXXXXXXVITESGIVNRADVELMEISGVYSFLVGETFMRAENPGAEL 396
            QI  A  LGAD +LLIV  L + ++  L   A+++GL+ +VEV D ++L+ AL   D  ++GVN RNL + EV++ N              I ESGI N+ D+  ++  G  +FL+G T M+  N   EL
Sbjct:  117 QIDTAFNLGADAILLIVKILTERELINLYEYARNLGLEAIVEVTDENDLKIALM-YDFNIIGVNARNLSSLEVNIRNARKILEMIPNDRIKIAESGIKNKEDIIELKKYGADAFLIGTTLMKDPNKIKEL 245          
The following BLAST results are available for this feature:
BLAST of EY684638 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 383
Match NameE-valueIdentityDescription
TRPC_ECOLI2.952e-1438.46Tryptophan biosynthesis protein trpCF OS=Escherich... [more]
TRPC_CHLL22.952e-1437.29Indole-3-glycerol phosphate synthase OS=Chlorobium... [more]
TRPC_BACCQ2.952e-1438.89Indole-3-glycerol phosphate synthase OS=Bacillus c... [more]
TRPC_BACC72.952e-1438.89Indole-3-glycerol phosphate synthase OS=Bacillus c... [more]
TRPC_STRGC3.855e-1436.84Indole-3-glycerol phosphate synthase OS=Streptococ... [more]
TRPC_CORGL3.855e-1436.69Tryptophan biosynthesis protein trpCF OS=Corynebac... [more]
TRPC_BEUC13.855e-1438.28Indole-3-glycerol phosphate synthase OS=Beutenberg... [more]
TRPC_STRMU5.035e-1438.35Indole-3-glycerol phosphate synthase OS=Streptococ... [more]
TRPC_BUCAP5.035e-1433.10Tryptophan biosynthesis protein trpCF OS=Buchnera ... [more]
TRPC_SULTO6.576e-1437.69Indole-3-glycerol phosphate synthase OS=Sulfolobus... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-015-E11-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684638 ID=EY684638; Name=EY684638; organism=Citrus sinensis; type=EST; length=851bp
CCCTACCAGATCGTCGAAGCTCGTGCCTTGGGCGCCGATTGCGTGCTGTT
GATCGTCTCCGCACTGGATGACGTGAAGATGGCCGAACTGGCGGCCGTGG
CCAAAAGCGTCGGCCTCGACGTGCTGGTGGAAGTGCACGACGGTGATGAA
CTGGAACGCGCGTTGAAAACCCTCGACACACCGTTGGTGGGCGTCAACAA
CCGCAACCTGCACACGTTTGAAGTCAGCCTGGAAAACACCCTCGACCTGT
TGCCGCGTATCCCGCGTGACCGGTTGGTGATTACCGAAAGTGGCATCGTC
AATCGCGCCGATGTCGAACTGATGGAAATCAGCGGCGTGTACTCGTTCCT
CGTCGGCGAAACCTTCATGCGTGCCGAGAACCCGGGGGCTGAATTGCAGC
GCCTGTTCTTCCCGGAGCGTGGCGTTGCTGTCAGCGGTTCGACCCTGGAT
TGATGATGACCCAGCCGGTGGCGATGACGGTCGAGGCAGGCCTTAAGGCC
GAGCAGGATTTGCTCGCCGCTGTCTGCGCGGGGGAGCAGCCGTTCGGCCT
GCTGTTCTGGCAGCCCAGCGATCCAACGTTGGTGATGCCTCCGCGTTTGA
GCCGACTTCCGGCATTCGAGACGCGCAGTCAGGTATCCGGCACGAGGCCG
GTTGCCCGGGGCTGCGTGCGGGAAGACGGCGGTGGACTGGGACCGGCACG
AAGAGGCGACGGACGAACCGTCCCTGGCGGGAGCGCAAGCAGCGGGGAGG
GCGTGAGCGAGGGGGGTCGCGAGCGGAGAGGGAGGGTTGTAAACGTGCAT
CCGGCGGCCCGCAACCCAACGGGGGAGCCGCCCCACCGGCCGCATGGGGG
G
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