EY684638

Overview
NameEY684638
Unique NameEY684638
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length851
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684638 vs. ExPASy Swiss-Prot
Match: TRPC_BUCSC (Tryptophan biosynthesis protein trpCF OS=Buchnera aphidicola subsp. Schlechtendalia chinensis GN=trpC PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.155e-12
Identity = 45/123 (36.59%), Postives = 68/123 (55.28%), Query Frame = 1
Query:    1 PYQIVEARALGADCVLLIVSALDDVKMAELAAVAKSVGLDVLVEVHDGDELERALKTLDTPLVGVNNRNLHTFEVSLENTXXXXXXXXXXXXVITESGIVNRADVELMEISGVYSFLVGETFM 369
            PYQI  AR   AD +LL++S L D +   L  +A S+ + VL E+++  EL+RA+  L+  ++G+NNRNL  F +S  NT            VI+ESGI +   +   + + V  FL+G   M
Sbjct:  122 PYQIYLARYYQADSILLMLSILKDNQYRALEKLAYSLNMAVLTEINNKMELDRAIN-LNAKIIGINNRNLKNFSISTSNTYKLASKISKNTIVISESGINSYNQLRKFK-NLVQGFLIGSALM 242          
BLAST of EY684638 vs. ExPASy Swiss-Prot
Match: TRPC_LACLA (Indole-3-glycerol phosphate synthase OS=Lactococcus lactis subsp. lactis GN=trpC PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.371e-11
Identity = 53/136 (38.97%), Postives = 75/136 (55.15%), Query Frame = 1
Query:    7 QIVEARALGADCVLLIVSALDDV--KMAELAAVAKSVGLDVLVEVHDGDELERALKTLDTPLVGVNNRNLHTFEVSLENTXXXXXXXXXXXXVITESGIVNRADVELMEISGVYS-FLVGETFMRAENPGAELQRL 405
            QI  A   GA  +LLIV+  ++   K+  L   A S+GL+VLVE H+  ELE A + L   ++GVNNRNL TFEV L+N+             I+ESGI +    E  ++S  ++  LVG   M++EN    L+ L
Sbjct:  123 QINRAVNAGATVILLIVAVFENQYPKLQNLYNYALSLGLEVLVETHNKAELEIAHQ-LGAKIIGVNNRNLKTFEVILQNSVDLTPYFKEDSIYISESGIFSAN--EAQKVSDTFNGILVGTALMQSENLEKSLKDL 255          
BLAST of EY684638 vs. ExPASy Swiss-Prot
Match: TRPC_PASMU (Tryptophan biosynthesis protein trpCF OS=Pasteurella multocida GN=trpC PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.339e-11
Identity = 47/146 (32.19%), Postives = 74/146 (50.68%), Query Frame = 1
Query:    4 YQIVEARALGADCVLLIVSALDDVKMAELAAVAKSVGLDVLVEVHDGDELERALKTLDTPLVGVNNRNLHTFEVSLEN----TXXXXXXXXXXXXVITESGIVNRADV-ELMEISGVYSFLVGETFMRAENPGAELQRLFFPERGV 426
            YQ+  AR   AD +LL++S L+D +  +LA +A  +G+ VL E  +  E  RAL  L   ++GVNNRNLH   V ++     T            +I+ESGI     + +L  ++    FL+G + M+  +    ++ L F E  V
Sbjct:  128 YQVYLARYAQADAILLMLSVLNDERYTQLATLAHQLGMGVLTETSNEAEFARAL-ALKAKVIGVNNRNLHDLSVDIQRVAQITQHYADQIPPETKIISESGIYQHQQIRDLRHVAD--GFLIGSSLMQHTDLNHAVRSLLFGEHKV 270          
The following BLAST results are available for this feature:
BLAST of EY684638 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 383
Match NameE-valueIdentityDescription
TRPC_BUCSC6.155e-1236.59Tryptophan biosynthesis protein trpCF OS=Buchnera ... [more]
TRPC_LACLA1.371e-1138.97Indole-3-glycerol phosphate synthase OS=Lactococcu... [more]
TRPC_PASMU2.339e-1132.19Tryptophan biosynthesis protein trpCF OS=Pasteurel... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-015-E11-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684638 ID=EY684638; Name=EY684638; organism=Citrus sinensis; type=EST; length=851bp
CCCTACCAGATCGTCGAAGCTCGTGCCTTGGGCGCCGATTGCGTGCTGTT
GATCGTCTCCGCACTGGATGACGTGAAGATGGCCGAACTGGCGGCCGTGG
CCAAAAGCGTCGGCCTCGACGTGCTGGTGGAAGTGCACGACGGTGATGAA
CTGGAACGCGCGTTGAAAACCCTCGACACACCGTTGGTGGGCGTCAACAA
CCGCAACCTGCACACGTTTGAAGTCAGCCTGGAAAACACCCTCGACCTGT
TGCCGCGTATCCCGCGTGACCGGTTGGTGATTACCGAAAGTGGCATCGTC
AATCGCGCCGATGTCGAACTGATGGAAATCAGCGGCGTGTACTCGTTCCT
CGTCGGCGAAACCTTCATGCGTGCCGAGAACCCGGGGGCTGAATTGCAGC
GCCTGTTCTTCCCGGAGCGTGGCGTTGCTGTCAGCGGTTCGACCCTGGAT
TGATGATGACCCAGCCGGTGGCGATGACGGTCGAGGCAGGCCTTAAGGCC
GAGCAGGATTTGCTCGCCGCTGTCTGCGCGGGGGAGCAGCCGTTCGGCCT
GCTGTTCTGGCAGCCCAGCGATCCAACGTTGGTGATGCCTCCGCGTTTGA
GCCGACTTCCGGCATTCGAGACGCGCAGTCAGGTATCCGGCACGAGGCCG
GTTGCCCGGGGCTGCGTGCGGGAAGACGGCGGTGGACTGGGACCGGCACG
AAGAGGCGACGGACGAACCGTCCCTGGCGGGAGCGCAAGCAGCGGGGAGG
GCGTGAGCGAGGGGGGTCGCGAGCGGAGAGGGAGGGTTGTAAACGTGCAT
CCGGCGGCCCGCAACCCAACGGGGGAGCCGCCCCACCGGCCGCATGGGGG
G
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