EY684638

Overview
NameEY684638
Unique NameEY684638
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length851
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684638 vs. ExPASy Swiss-Prot
Match: TRPC_RALEH (Indole-3-glycerol phosphate synthase OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=trpC PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 7.982e-36
Identity = 81/135 (60.00%), Postives = 98/135 (72.59%), Query Frame = 1
Query:    4 YQIVEARALGADCVLLIVSALDDVKMAELAAVAKSVGLDVLVEVHDGDELERALKTLDTPLVGVNNRNLHTFEVSLENTXXXXXXXXXXXXVITESGIVNRADVELMEISGVYSFLVGETFMRAENPGAELQRLF 408
            YQ+ EAR  GADC+LLIV+ALD   MAEL A A  +G+DVLVEVH  DEL+ AL+ L TPL+GVNNRNL TFEVSL+NT            V+TESGI+ +ADV+ M  + V++FLVGE FMRA +PG EL RLF
Sbjct:  133 YQVYEARTWGADCILLIVAALDPGLMAELEACALELGMDVLVEVHGDDELDAALR-LKTPLLGVNNRNLRTFEVSLDNTLDLLPHMPADKLVVTESGILGQADVKRMRDANVHAFLVGEAFMRAPDPGVELARLF 266          
BLAST of EY684638 vs. ExPASy Swiss-Prot
Match: TRPC_XYLFT (Indole-3-glycerol phosphate synthase OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=trpC PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 1.043e-35
Identity = 74/137 (54.01%), Postives = 99/137 (72.26%), Query Frame = 1
Query:    1 PYQIVEARALGADCVLLIVSALDDVKMAELAAVAKSVGLDVLVEVHDGDELERALKTLDTPLVGVNNRNLHTFEVSLENTXXXXXXXXXXXXVITESGIVNRADVELMEISGVYSFLVGETFMRAENPGAELQRLFF 411
            PYQ+ EAR LGADC+LLIV+ALDD ++ +L+ +A  +G+DVLVEVHD DELERA++ +  PL+G+NNRNL TF VSLE T            +++ESGI+  ADV+ +  +GV +FLVGE FMRA  PG  L+ +FF
Sbjct:  127 PYQVYEARVLGADCILLIVAALDDAQLVDLSGLALQLGMDVLVEVHDIDELERAIQ-ISAPLIGINNRNLSTFNVSLETTLTMKGLVPRDRLLVSESGILTSADVQRLRAAGVNAFLVGEAFMRAAEPGESLREMFF 262          
BLAST of EY684638 vs. ExPASy Swiss-Prot
Match: TRPC_XYLFM (Indole-3-glycerol phosphate synthase OS=Xylella fastidiosa (strain M12) GN=trpC PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 1.043e-35
Identity = 74/137 (54.01%), Postives = 99/137 (72.26%), Query Frame = 1
Query:    1 PYQIVEARALGADCVLLIVSALDDVKMAELAAVAKSVGLDVLVEVHDGDELERALKTLDTPLVGVNNRNLHTFEVSLENTXXXXXXXXXXXXVITESGIVNRADVELMEISGVYSFLVGETFMRAENPGAELQRLFF 411
            PYQ+ EAR LGADC+LLIV+ALDD ++ +L+ +A  +G+DVLVEVHD DELERA++ +  PL+G+NNRNL TF VSLE T            +++ESGI+  ADV+ +  +GV +FLVGE FMRA  PG  L+ +FF
Sbjct:  127 PYQVYEARVLGADCILLIVAALDDAQLVDLSGLALQLGMDVLVEVHDIDELERAIQ-ISAPLIGINNRNLSTFNVSLETTLTMKGLVPRDRLLVSESGILTSADVQRLRAAGVNAFLVGEAFMRAAEPGESLREMFF 262          
BLAST of EY684638 vs. ExPASy Swiss-Prot
Match: TRPC_XYLFA (Indole-3-glycerol phosphate synthase OS=Xylella fastidiosa GN=trpC PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 1.043e-35
Identity = 74/137 (54.01%), Postives = 99/137 (72.26%), Query Frame = 1
Query:    1 PYQIVEARALGADCVLLIVSALDDVKMAELAAVAKSVGLDVLVEVHDGDELERALKTLDTPLVGVNNRNLHTFEVSLENTXXXXXXXXXXXXVITESGIVNRADVELMEISGVYSFLVGETFMRAENPGAELQRLFF 411
            PYQ+ EAR LGADC+LLIV+ALDD ++ +L+ +A  +G+DVLVEVHD DELERA++ +  PL+G+NNRNL TF VSLE T            +++ESGI+  ADV+ +  +GV +FLVGE FMRA  PG  L+ +FF
Sbjct:  127 PYQVYEARVLGADCILLIVAALDDAQLVDLSGLALQLGMDVLVEVHDIDELERAIQ-ISAPLIGINNRNLSTFNVSLETTLTMKGLVPRDRLLVSESGILTSADVQRLRAAGVNAFLVGEAFMRATEPGESLREMFF 262          
BLAST of EY684638 vs. ExPASy Swiss-Prot
Match: TRPC_XYLF2 (Indole-3-glycerol phosphate synthase OS=Xylella fastidiosa (strain M23) GN=trpC PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 1.043e-35
Identity = 74/137 (54.01%), Postives = 99/137 (72.26%), Query Frame = 1
Query:    1 PYQIVEARALGADCVLLIVSALDDVKMAELAAVAKSVGLDVLVEVHDGDELERALKTLDTPLVGVNNRNLHTFEVSLENTXXXXXXXXXXXXVITESGIVNRADVELMEISGVYSFLVGETFMRAENPGAELQRLFF 411
            PYQ+ EAR LGADC+LLIV+ALDD ++ +L+ +A  +G+DVLVEVHD DELERA++ +  PL+G+NNRNL TF VSLE T            +++ESGI+  ADV+ +  +GV +FLVGE FMRA  PG  L+ +FF
Sbjct:  127 PYQVYEARVLGADCILLIVAALDDAQLVDLSGLALQLGMDVLVEVHDIDELERAIQ-ISAPLIGINNRNLSTFNVSLETTLTMKGLVPRDRLLVSESGILTSADVQRLRAAGVNAFLVGEAFMRAAEPGESLREMFF 262          
BLAST of EY684638 vs. ExPASy Swiss-Prot
Match: TRPC_CUPTR (Indole-3-glycerol phosphate synthase OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=trpC PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 1.043e-35
Identity = 82/135 (60.74%), Postives = 97/135 (71.85%), Query Frame = 1
Query:    4 YQIVEARALGADCVLLIVSALDDVKMAELAAVAKSVGLDVLVEVHDGDELERALKTLDTPLVGVNNRNLHTFEVSLENTXXXXXXXXXXXXVITESGIVNRADVELMEISGVYSFLVGETFMRAENPGAELQRLF 408
            YQ+ EAR  GADC+LLIV+ALD   MAEL A A  +G+DVLVEVH  DELE AL+ L TPL+GVNNRNL TFEVSL+NT            V+TESGI+  ADV+ M  + V++FLVGE FMRA+ PG EL RLF
Sbjct:  133 YQVYEARTWGADCILLIVAALDHGLMAELEACALELGMDVLVEVHGDDELEAALR-LKTPLLGVNNRNLRTFEVSLDNTLDLLPHIPADKLVVTESGILAPADVKRMRDANVHAFLVGEAFMRAKEPGVELARLF 266          
BLAST of EY684638 vs. ExPASy Swiss-Prot
Match: TRPC_RALPJ (Indole-3-glycerol phosphate synthase OS=Ralstonia pickettii (strain 12J) GN=trpC PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 2.323e-35
Identity = 80/135 (59.26%), Postives = 96/135 (71.11%), Query Frame = 1
Query:    4 YQIVEARALGADCVLLIVSALDDVKMAELAAVAKSVGLDVLVEVHDGDELERALKTLDTPLVGVNNRNLHTFEVSLENTXXXXXXXXXXXXVITESGIVNRADVELMEISGVYSFLVGETFMRAENPGAELQRLF 408
            YQ+ EAR+ GADC+LLIV+ALD   M EL A A  +G+DVLVEVHDG EL+RAL+ L TPLVGVNNRNL TFE +L+ T            V+TESGI+   DV  M  + V +FLVGE FMRA++PGAEL RLF
Sbjct:  133 YQVYEARSWGADCILLIVAALDQGLMEELEACALELGMDVLVEVHDGHELDRALR-LQTPLVGVNNRNLRTFETTLDTTLGLLKHMPDDRIVVTESGILTPDDVRKMRAAAVNAFLVGEAFMRADDPGAELARLF 266          
BLAST of EY684638 vs. ExPASy Swiss-Prot
Match: TRPC_BURVG (Indole-3-glycerol phosphate synthase OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=trpC PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 2.323e-35
Identity = 79/136 (58.09%), Postives = 99/136 (72.79%), Query Frame = 1
Query:    4 YQIVEARALGADCVLLIVSALDDVKMAELAAVAKSVGLDVLVEVHDGDELERALKTLDTPLVGVNNRNLHTFEVSLENTXXXXXXXXXXXXVITESGIVNRADVELMEISGVYSFLVGETFMRAENPGAELQRLFF 411
            YQI+EARA+GAD +LLI +ALD   M EL A A S+GL VLVEVHD +E+E+AL TL TPLVG+NNRNL TFE +++ T            V+TESGI++RADV+ M  + V +FLVGE FMRA+ PGA L R+FF
Sbjct:  127 YQILEARAMGADAILLIAAALDTPLMQELEAYAHSLGLAVLVEVHDRNEMEQAL-TLKTPLVGINNRNLRTFETTIQTTLDMLDMVPADRMVVTESGILSRADVDTMRAANVNAFLVGEAFMRADEPGAALARMFF 261          
BLAST of EY684638 vs. ExPASy Swiss-Prot
Match: TRPC_BURCM (Indole-3-glycerol phosphate synthase OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=trpC PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 3.033e-35
Identity = 78/136 (57.35%), Postives = 98/136 (72.06%), Query Frame = 1
Query:    4 YQIVEARALGADCVLLIVSALDDVKMAELAAVAKSVGLDVLVEVHDGDELERALKTLDTPLVGVNNRNLHTFEVSLENTXXXXXXXXXXXXVITESGIVNRADVELMEISGVYSFLVGETFMRAENPGAELQRLFF 411
            YQI+EARA+GAD +LLI +ALD   M +L A A S+GL VLVEVHD DE+E+AL TL TPL+G+NNRNL TFE S++ T            V+TESGI++R DV+ M  + V +FLVGE FMRA+ PG EL R+FF
Sbjct:  127 YQILEARAMGADAILLIAAALDTPLMQDLEAYAHSLGLAVLVEVHDRDEMEQAL-TLKTPLLGINNRNLRTFETSIQTTLDMLDMIPPERIVVTESGILSRTDVDTMRAANVNAFLVGEAFMRADQPGEELARMFF 261          
BLAST of EY684638 vs. ExPASy Swiss-Prot
Match: TRPC_BURA4 (Indole-3-glycerol phosphate synthase OS=Burkholderia ambifaria (strain MC40-6) GN=trpC PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 3.033e-35
Identity = 78/136 (57.35%), Postives = 98/136 (72.06%), Query Frame = 1
Query:    4 YQIVEARALGADCVLLIVSALDDVKMAELAAVAKSVGLDVLVEVHDGDELERALKTLDTPLVGVNNRNLHTFEVSLENTXXXXXXXXXXXXVITESGIVNRADVELMEISGVYSFLVGETFMRAENPGAELQRLFF 411
            YQI+EARA+GAD +LLI +ALD   M +L A A S+GL VLVEVHD DE+E+AL TL TPL+G+NNRNL TFE S++ T            V+TESGI++R DV+ M  + V +FLVGE FMRA+ PG EL R+FF
Sbjct:  127 YQILEARAMGADAILLIAAALDTPLMQDLEAYAHSLGLAVLVEVHDRDEMEQAL-TLKTPLLGINNRNLRTFETSIQTTLDMLDMIPPERMVVTESGILSRTDVDTMRAANVNAFLVGEAFMRADQPGEELARMFF 261          
The following BLAST results are available for this feature:
BLAST of EY684638 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 383
Match NameE-valueIdentityDescription
TRPC_RALEH7.982e-3660.00Indole-3-glycerol phosphate synthase OS=Ralstonia ... [more]
TRPC_XYLFT1.043e-3554.01Indole-3-glycerol phosphate synthase OS=Xylella fa... [more]
TRPC_XYLFM1.043e-3554.01Indole-3-glycerol phosphate synthase OS=Xylella fa... [more]
TRPC_XYLFA1.043e-3554.01Indole-3-glycerol phosphate synthase OS=Xylella fa... [more]
TRPC_XYLF21.043e-3554.01Indole-3-glycerol phosphate synthase OS=Xylella fa... [more]
TRPC_CUPTR1.043e-3560.74Indole-3-glycerol phosphate synthase OS=Cupriavidu... [more]
TRPC_RALPJ2.323e-3559.26Indole-3-glycerol phosphate synthase OS=Ralstonia ... [more]
TRPC_BURVG2.323e-3558.09Indole-3-glycerol phosphate synthase OS=Burkholder... [more]
TRPC_BURCM3.033e-3557.35Indole-3-glycerol phosphate synthase OS=Burkholder... [more]
TRPC_BURA43.033e-3557.35Indole-3-glycerol phosphate synthase OS=Burkholder... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-015-E11-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684638 ID=EY684638; Name=EY684638; organism=Citrus sinensis; type=EST; length=851bp
CCCTACCAGATCGTCGAAGCTCGTGCCTTGGGCGCCGATTGCGTGCTGTT
GATCGTCTCCGCACTGGATGACGTGAAGATGGCCGAACTGGCGGCCGTGG
CCAAAAGCGTCGGCCTCGACGTGCTGGTGGAAGTGCACGACGGTGATGAA
CTGGAACGCGCGTTGAAAACCCTCGACACACCGTTGGTGGGCGTCAACAA
CCGCAACCTGCACACGTTTGAAGTCAGCCTGGAAAACACCCTCGACCTGT
TGCCGCGTATCCCGCGTGACCGGTTGGTGATTACCGAAAGTGGCATCGTC
AATCGCGCCGATGTCGAACTGATGGAAATCAGCGGCGTGTACTCGTTCCT
CGTCGGCGAAACCTTCATGCGTGCCGAGAACCCGGGGGCTGAATTGCAGC
GCCTGTTCTTCCCGGAGCGTGGCGTTGCTGTCAGCGGTTCGACCCTGGAT
TGATGATGACCCAGCCGGTGGCGATGACGGTCGAGGCAGGCCTTAAGGCC
GAGCAGGATTTGCTCGCCGCTGTCTGCGCGGGGGAGCAGCCGTTCGGCCT
GCTGTTCTGGCAGCCCAGCGATCCAACGTTGGTGATGCCTCCGCGTTTGA
GCCGACTTCCGGCATTCGAGACGCGCAGTCAGGTATCCGGCACGAGGCCG
GTTGCCCGGGGCTGCGTGCGGGAAGACGGCGGTGGACTGGGACCGGCACG
AAGAGGCGACGGACGAACCGTCCCTGGCGGGAGCGCAAGCAGCGGGGAGG
GCGTGAGCGAGGGGGGTCGCGAGCGGAGAGGGAGGGTTGTAAACGTGCAT
CCGGCGGCCCGCAACCCAACGGGGGAGCCGCCCCACCGGCCGCATGGGGG
G
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