EY684638

Overview
NameEY684638
Unique NameEY684638
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length851
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684638 vs. ExPASy Swiss-Prot
Match: TRPC_BURCH (Indole-3-glycerol phosphate synthase OS=Burkholderia cenocepacia (strain HI2424) GN=trpC PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 3.962e-35
Identity = 79/136 (58.09%), Postives = 97/136 (71.32%), Query Frame = 1
Query:    4 YQIVEARALGADCVLLIVSALDDVKMAELAAVAKSVGLDVLVEVHDGDELERALKTLDTPLVGVNNRNLHTFEVSLENTXXXXXXXXXXXXVITESGIVNRADVELMEISGVYSFLVGETFMRAENPGAELQRLFF 411
            YQIVEARA+GAD +LLI +ALD   M +L A A S+GL VLVEVHD  E+E+AL TL TPL+G+NNRNL TFE S++ T            V+TESGI++R DV+ M  + V +FLVGE FMRAE PG EL R+FF
Sbjct:  127 YQIVEARAMGADAILLIAAALDTPLMQDLEAYAHSLGLAVLVEVHDRHEMEQAL-TLKTPLLGINNRNLRTFETSIQTTLDMLDMIPADRIVVTESGILSRTDVDTMRAANVNTFLVGEAFMRAEQPGEELARMFF 261          
BLAST of EY684638 vs. ExPASy Swiss-Prot
Match: TRPC_BURCC (Indole-3-glycerol phosphate synthase OS=Burkholderia cenocepacia (strain MC0-3) GN=trpC PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 3.962e-35
Identity = 79/136 (58.09%), Postives = 97/136 (71.32%), Query Frame = 1
Query:    4 YQIVEARALGADCVLLIVSALDDVKMAELAAVAKSVGLDVLVEVHDGDELERALKTLDTPLVGVNNRNLHTFEVSLENTXXXXXXXXXXXXVITESGIVNRADVELMEISGVYSFLVGETFMRAENPGAELQRLFF 411
            YQIVEARA+GAD +LLI +ALD   M +L A A S+GL VLVEVHD  E+E+AL TL TPL+G+NNRNL TFE S++ T            V+TESGI++R DV+ M  + V +FLVGE FMRAE PG EL R+FF
Sbjct:  127 YQIVEARAMGADAILLIAAALDTPLMQDLEAYAHSLGLAVLVEVHDRHEMEQAL-TLKTPLLGINNRNLRTFETSIQTTLDMLDMIPADRIVVTESGILSRTDVDTMRAANVNTFLVGEAFMRAEQPGEELARMFF 261          
BLAST of EY684638 vs. ExPASy Swiss-Prot
Match: TRPC_BURCA (Indole-3-glycerol phosphate synthase OS=Burkholderia cenocepacia (strain AU 1054) GN=trpC PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 3.962e-35
Identity = 79/136 (58.09%), Postives = 97/136 (71.32%), Query Frame = 1
Query:    4 YQIVEARALGADCVLLIVSALDDVKMAELAAVAKSVGLDVLVEVHDGDELERALKTLDTPLVGVNNRNLHTFEVSLENTXXXXXXXXXXXXVITESGIVNRADVELMEISGVYSFLVGETFMRAENPGAELQRLFF 411
            YQIVEARA+GAD +LLI +ALD   M +L A A S+GL VLVEVHD  E+E+AL TL TPL+G+NNRNL TFE S++ T            V+TESGI++R DV+ M  + V +FLVGE FMRAE PG EL R+FF
Sbjct:  127 YQIVEARAMGADAILLIAAALDTPLMQDLEAYAHSLGLAVLVEVHDRHEMEQAL-TLKTPLLGINNRNLRTFETSIQTTLDMLDMIPADRIVVTESGILSRTDVDTMRAANVNTFLVGEAFMRAEQPGEELARMFF 261          
BLAST of EY684638 vs. ExPASy Swiss-Prot
Match: TRPC_RALEJ (Indole-3-glycerol phosphate synthase OS=Ralstonia eutropha (strain JMP134) GN=trpC PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 6.757e-35
Identity = 79/135 (58.52%), Postives = 98/135 (72.59%), Query Frame = 1
Query:    4 YQIVEARALGADCVLLIVSALDDVKMAELAAVAKSVGLDVLVEVHDGDELERALKTLDTPLVGVNNRNLHTFEVSLENTXXXXXXXXXXXXVITESGIVNRADVELMEISGVYSFLVGETFMRAENPGAELQRLF 408
            YQ+ EAR+ GADC+LLIV+ALD   MA+L A A  +G+DVLVEVH  DEL+ AL+ L TPL+GVNNRNL TFEVSL+NT            V+TESGI+   DV+ M  + V++FLVGE FMRA++PG EL RLF
Sbjct:  133 YQVYEARSWGADCILLIVAALDPGLMADLEACAHELGMDVLVEVHGADELDSALR-LKTPLLGVNNRNLRTFEVSLDNTLDLLPSMPADRLVVTESGILGPNDVKRMRDADVHAFLVGEAFMRAKDPGVELARLF 266          
BLAST of EY684638 vs. ExPASy Swiss-Prot
Match: TRPC_BORPD (Indole-3-glycerol phosphate synthase OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=trpC PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 6.757e-35
Identity = 78/135 (57.78%), Postives = 98/135 (72.59%), Query Frame = 1
Query:    1 PYQIVEARALGADCVLLIVSALDDVKMAELAAVAKSVGLDVLVEVHDGDELERALKTLDTPLVGVNNRNLHTFEVSLENTXXXXXXXXXXXXVITESGIVNRADVELMEISGVYSFLVGETFMRAENPGAELQRL 405
            PYQ++ ARA+GADCVLLIV+AL   ++ EL  +A  +G+DVLVEVHD  EL+ AL +L TPL+G+NNRNL TFE SL+NT            VITESGI++  DV+LM    V++FLVGE FMRAE+PG EL RL
Sbjct:  127 PYQVISARAMGADCVLLIVAALAPSQLRELETLAMELGMDVLVEVHDAKELDIAL-SLKTPLLGINNRNLRTFETSLQNTLNLLPQIPAGKRVITESGILSPEDVKLMRSHQVHAFLVGEAFMRAEDPGVELARL 260          
BLAST of EY684638 vs. ExPASy Swiss-Prot
Match: TRPC_BURS3 (Indole-3-glycerol phosphate synthase OS=Burkholderia sp. (strain 383) GN=trpC PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 1.153e-34
Identity = 77/136 (56.62%), Postives = 98/136 (72.06%), Query Frame = 1
Query:    4 YQIVEARALGADCVLLIVSALDDVKMAELAAVAKSVGLDVLVEVHDGDELERALKTLDTPLVGVNNRNLHTFEVSLENTXXXXXXXXXXXXVITESGIVNRADVELMEISGVYSFLVGETFMRAENPGAELQRLFF 411
            YQI+EARA+GAD +LLI +ALD   M +L A A S+GL VLVEVHD +E+E+AL TL TPL+G+NNRNL TFE S++ T            V+TESGI++R DV+ M  + V +FLVGE FMRA+ PG EL R+FF
Sbjct:  127 YQIMEARAMGADAILLIAAALDTPLMQDLEAYAHSLGLAVLVEVHDRNEMEQAL-TLKTPLLGINNRNLRTFETSIQTTLDMLDMIPSDRIVVTESGILSRTDVDTMRAANVNTFLVGEAFMRADQPGEELARMFF 261          
BLAST of EY684638 vs. ExPASy Swiss-Prot
Match: TRPC_BURM1 (Indole-3-glycerol phosphate synthase OS=Burkholderia multivorans (strain ATCC 17616 / 249) GN=trpC PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 3.354e-34
Identity = 78/136 (57.35%), Postives = 97/136 (71.32%), Query Frame = 1
Query:    4 YQIVEARALGADCVLLIVSALDDVKMAELAAVAKSVGLDVLVEVHDGDELERALKTLDTPLVGVNNRNLHTFEVSLENTXXXXXXXXXXXXVITESGIVNRADVELMEISGVYSFLVGETFMRAENPGAELQRLFF 411
            YQI+EARA+GAD +LLI +ALD   M EL A A S+ L VLVEVHD +E+E+AL TL TPL+G+NNRNL TFE S+  T            V+TESGI++RADV+ M  + V +FLVGE FMRA+ PG EL R+FF
Sbjct:  127 YQILEARAMGADAILLIAAALDTPLMQELEAYAHSLDLAVLVEVHDRNEMEQAL-TLKTPLLGINNRNLRTFETSIRATLDMLDMIPQDRIVVTESGILSRADVDTMRAANVNTFLVGEAFMRADQPGEELARMFF 261          
BLAST of EY684638 vs. ExPASy Swiss-Prot
Match: TRPC_BORA1 (Indole-3-glycerol phosphate synthase OS=Bordetella avium (strain 197N) GN=trpC PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 3.354e-34
Identity = 78/135 (57.78%), Postives = 95/135 (70.37%), Query Frame = 1
Query:    1 PYQIVEARALGADCVLLIVSALDDVKMAELAAVAKSVGLDVLVEVHDGDELERALKTLDTPLVGVNNRNLHTFEVSLENTXXXXXXXXXXXXVITESGIVNRADVELMEISGVYSFLVGETFMRAENPGAELQRL 405
            PYQI+ ARA+GADCVLLIV+AL   ++ +L AVA  +G+DVLVEVHD  EL+ AL  + TPL+G+NNRNL +FE  LE T            V+TESGI+   DV+LM   GV +FLVGE FMRAE PGAEL RL
Sbjct:  127 PYQIISARAMGADCVLLIVAALSPTQLRDLEAVAMDLGMDVLVEVHDEAELDVALG-MKTPLLGINNRNLRSFETRLETTLNLLPRIPAGKRVVTESGILQPDDVQLMRRHGVQAFLVGEAFMRAEEPGAELARL 260          
BLAST of EY684638 vs. ExPASy Swiss-Prot
Match: TRPC_POLSQ (Indole-3-glycerol phosphate synthase OS=Polynucleobacter sp. (strain QLW-P1DMWA-1) GN=trpC PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 5.721e-34
Identity = 78/136 (57.35%), Postives = 98/136 (72.06%), Query Frame = 1
Query:    1 PYQIVEARALGADCVLLIVSALDDVKMAELAAVAKSVGLDVLVEVHDGDELERALKTLDTPLVGVNNRNLHTFEVSLENTXXXXXXXXXXXXVITESGIVNRADVELMEISGVYSFLVGETFMRAENPGAELQRLF 408
            PYQI EARA+GAD +LLIV+ L+  +M EL A A  +GLDVLVEVH+  ELE+AL+ L TPL+G+NNRNL TFEVSL+ T            ++TESGI++RADVELM  + + +FLVGE FMRA +PG  L  LF
Sbjct:  132 PYQIYEARAIGADAILLIVACLELNQMMELEACAHELGLDVLVEVHNAPELEQALE-LKTPLLGINNRNLKTFEVSLQTTLSLLSSVPKNKTLVTESGILSRADVELMRKNQINAFLVGEAFMRAPDPGTALSELF 266          
BLAST of EY684638 vs. ExPASy Swiss-Prot
Match: TRPC_POLSJ (Indole-3-glycerol phosphate synthase OS=Polaromonas sp. (strain JS666 / ATCC BAA-500) GN=trpC PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.664e-33
Identity = 78/135 (57.78%), Postives = 96/135 (71.11%), Query Frame = 1
Query:    4 YQIVEARALGADCVLLIVSALDDVKMAELAAVAKSVGLDVLVEVHDGDELERALKTLDTPLVGVNNRNLHTFEVSLENTXXXXXXXXXXXXVITESGIVNRADVELMEISGVYSFLVGETFMRAENPGAELQRLF 408
            YQ+ EAR +GADC+LLIV+ LDD +M  L A+A S+ + VLVEVHD  ELERALK L TPLVG+NNRNL TFEVSL+NT            ++TESGI   ADV+ +  + V +FLVGE FMRAE+PG  L +LF
Sbjct:  128 YQVYEARVMGADCILLIVACLDDAQMKALEALAFSLDMAVLVEVHDEAELERALK-LRTPLVGINNRNLKTFEVSLDNTLSLLGKVPADRLLVTESGISTPADVKRLREARVNAFLVGEAFMRAEDPGVALAQLF 261          
The following BLAST results are available for this feature:
BLAST of EY684638 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 383
Match NameE-valueIdentityDescription
TRPC_BURCH3.962e-3558.09Indole-3-glycerol phosphate synthase OS=Burkholder... [more]
TRPC_BURCC3.962e-3558.09Indole-3-glycerol phosphate synthase OS=Burkholder... [more]
TRPC_BURCA3.962e-3558.09Indole-3-glycerol phosphate synthase OS=Burkholder... [more]
TRPC_RALEJ6.757e-3558.52Indole-3-glycerol phosphate synthase OS=Ralstonia ... [more]
TRPC_BORPD6.757e-3557.78Indole-3-glycerol phosphate synthase OS=Bordetella... [more]
TRPC_BURS31.153e-3456.62Indole-3-glycerol phosphate synthase OS=Burkholder... [more]
TRPC_BURM13.354e-3457.35Indole-3-glycerol phosphate synthase OS=Burkholder... [more]
TRPC_BORA13.354e-3457.78Indole-3-glycerol phosphate synthase OS=Bordetella... [more]
TRPC_POLSQ5.721e-3457.35Indole-3-glycerol phosphate synthase OS=Polynucleo... [more]
TRPC_POLSJ1.664e-3357.78Indole-3-glycerol phosphate synthase OS=Polaromona... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-015-E11-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684638 ID=EY684638; Name=EY684638; organism=Citrus sinensis; type=EST; length=851bp
CCCTACCAGATCGTCGAAGCTCGTGCCTTGGGCGCCGATTGCGTGCTGTT
GATCGTCTCCGCACTGGATGACGTGAAGATGGCCGAACTGGCGGCCGTGG
CCAAAAGCGTCGGCCTCGACGTGCTGGTGGAAGTGCACGACGGTGATGAA
CTGGAACGCGCGTTGAAAACCCTCGACACACCGTTGGTGGGCGTCAACAA
CCGCAACCTGCACACGTTTGAAGTCAGCCTGGAAAACACCCTCGACCTGT
TGCCGCGTATCCCGCGTGACCGGTTGGTGATTACCGAAAGTGGCATCGTC
AATCGCGCCGATGTCGAACTGATGGAAATCAGCGGCGTGTACTCGTTCCT
CGTCGGCGAAACCTTCATGCGTGCCGAGAACCCGGGGGCTGAATTGCAGC
GCCTGTTCTTCCCGGAGCGTGGCGTTGCTGTCAGCGGTTCGACCCTGGAT
TGATGATGACCCAGCCGGTGGCGATGACGGTCGAGGCAGGCCTTAAGGCC
GAGCAGGATTTGCTCGCCGCTGTCTGCGCGGGGGAGCAGCCGTTCGGCCT
GCTGTTCTGGCAGCCCAGCGATCCAACGTTGGTGATGCCTCCGCGTTTGA
GCCGACTTCCGGCATTCGAGACGCGCAGTCAGGTATCCGGCACGAGGCCG
GTTGCCCGGGGCTGCGTGCGGGAAGACGGCGGTGGACTGGGACCGGCACG
AAGAGGCGACGGACGAACCGTCCCTGGCGGGAGCGCAAGCAGCGGGGAGG
GCGTGAGCGAGGGGGGTCGCGAGCGGAGAGGGAGGGTTGTAAACGTGCAT
CCGGCGGCCCGCAACCCAACGGGGGAGCCGCCCCACCGGCCGCATGGGGG
G
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