EY684638

Overview
NameEY684638
Unique NameEY684638
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length851
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684638 vs. ExPASy Swiss-Prot
Match: TRPC_ACISJ (Indole-3-glycerol phosphate synthase OS=Acidovorax sp. (strain JS42) GN=trpC PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.664e-33
Identity = 76/136 (55.88%), Postives = 95/136 (69.85%), Query Frame = 1
Query:    1 PYQIVEARALGADCVLLIVSALDDVKMAELAAVAKSVGLDVLVEVHDGDELERALKTLDTPLVGVNNRNLHTFEVSLENTXXXXXXXXXXXXVITESGIVNRADVELMEISGVYSFLVGETFMRAENPGAELQRLF 408
            PYQI E+RA GADCVLLI + L+D  MAE+  +A+S+ + VLVEVHDG ELERAL+ L TPLVG+NNRNL TFEVSL+ T            ++ ESGI+   DV  +  +GV +FLVGE FMRA +PG  L +LF
Sbjct:  131 PYQIYESRAFGADCVLLIAACLEDGLMAEMEQIARSLDMAVLVEVHDGAELERALR-LQTPLVGINNRNLRTFEVSLQTTLDLKKEVPADRLLVAESGILAPVDVHTLRDAGVNAFLVGEAFMRAPDPGRALAQLF 265          
BLAST of EY684638 vs. ExPASy Swiss-Prot
Match: TRPC_ACIAC (Indole-3-glycerol phosphate synthase OS=Acidovorax avenae subsp. citrulli (strain AAC00-1) GN=trpC PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 2.174e-33
Identity = 74/135 (54.81%), Postives = 96/135 (71.11%), Query Frame = 1
Query:    4 YQIVEARALGADCVLLIVSALDDVKMAELAAVAKSVGLDVLVEVHDGDELERALKTLDTPLVGVNNRNLHTFEVSLENTXXXXXXXXXXXXVITESGIVNRADVELMEISGVYSFLVGETFMRAENPGAELQRLF 408
            YQI E+RA+GAD +LLI + L+D +MAE  A+A S+G+  LVEVHDG EL+RALK L TPLVG+NNRNL TFEVSL+ T            ++ ESGI+   DV+ +  + V++FLVGE FMRA+ PGA L +LF
Sbjct:  132 YQIYESRAMGADAILLIAACLEDAQMAEFEAIAHSLGMAALVEVHDGAELDRALK-LRTPLVGINNRNLRTFEVSLDTTVSLRKAVPSDRLLVAESGILTPQDVKTLRDADVHAFLVGEAFMRAQEPGAALAKLF 265          
BLAST of EY684638 vs. ExPASy Swiss-Prot
Match: TRPC_DIAST (Indole-3-glycerol phosphate synthase OS=Diaphorobacter sp. (strain TPSY) GN=trpC PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.839e-33
Identity = 76/136 (55.88%), Postives = 95/136 (69.85%), Query Frame = 1
Query:    1 PYQIVEARALGADCVLLIVSALDDVKMAELAAVAKSVGLDVLVEVHDGDELERALKTLDTPLVGVNNRNLHTFEVSLENTXXXXXXXXXXXXVITESGIVNRADVELMEISGVYSFLVGETFMRAENPGAELQRLF 408
            PYQI E+RA+GADCVLLI + L+D  MAE+   A+S+ + VLVEVHDG ELERAL+ L TPLVG+NNRNL TFEVSL+ T            ++ ESGI+   DV  +  +GV +FLVGE FMRA +PG  L +LF
Sbjct:  131 PYQIYESRAMGADCVLLIAACLEDGLMAEMEQFARSLDMAVLVEVHDGAELERALR-LQTPLVGINNRNLRTFEVSLQTTLDLKKEVPADRLLVAESGILAPVDVHTLRDAGVNAFLVGEAFMRAPDPGRALAQLF 265          
BLAST of EY684638 vs. ExPASy Swiss-Prot
Match: TRPC_VEREI (Indole-3-glycerol phosphate synthase OS=Verminephrobacter eiseniae (strain EF01-2) GN=trpC PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 4.843e-33
Identity = 72/136 (52.94%), Postives = 93/136 (68.38%), Query Frame = 1
Query:    1 PYQIVEARALGADCVLLIVSALDDVKMAELAAVAKSVGLDVLVEVHDGDELERALKTLDTPLVGVNNRNLHTFEVSLENTXXXXXXXXXXXXVITESGIVNRADVELMEISGVYSFLVGETFMRAENPGAELQRLF 408
            PYQ+ EARA+GAD +LLI + LDD ++A+  A+A+S+ + VL+EVHD  ELERAL    TPLVG+NNRNL +FEVSL  T             +TESGI+   DV+ +  +GV +FLVGE FMRA +PG  L RLF
Sbjct:  131 PYQVYEARAMGADAILLIAACLDDAQLADFEAIARSLDMAVLLEVHDRPELERALARCKTPLVGINNRNLRSFEVSLSTTLDMLADMPPERLPVTESGILTPQDVKTLRDAGVQAFLVGEAFMRAADPGLALARLF 266          
BLAST of EY684638 vs. ExPASy Swiss-Prot
Match: TRPC_THIDA (Indole-3-glycerol phosphate synthase OS=Thiobacillus denitrificans (strain ATCC 25259) GN=trpC PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 4.843e-33
Identity = 78/135 (57.78%), Postives = 94/135 (69.63%), Query Frame = 1
Query:    4 YQIVEARALGADCVLLIVSALDDVKMAELAAVAKSVGLDVLVEVHDGDELERALKTLDTPLVGVNNRNLHTFEVSLENTXXXXXXXXXXXXVITESGIVNRADVELMEISGVYSFLVGETFMRAENPGAELQRLF 408
            YQ+ EARA+GADC+LLIV+AL+   M  L A+A  +G+ VLVE HD  EL+ AL TL TPL G+NNRNL TFEVSL+ T            V+TESGI+  ADV+ M   GV +FLVGE FMRA +PGAEL RLF
Sbjct:  128 YQVYEARAMGADCILLIVAALELPAMQALEALANELGMAVLVESHDAAELDAAL-TLRTPLQGINNRNLRTFEVSLDTTLSLLPKIGPERIVVTESGILAPADVDTMRSRGVNTFLVGEAFMRAADPGAELARLF 261          
BLAST of EY684638 vs. ExPASy Swiss-Prot
Match: TRPC_HERAR (Indole-3-glycerol phosphate synthase OS=Herminiimonas arsenicoxydans GN=trpC PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 4.843e-33
Identity = 78/136 (57.35%), Postives = 94/136 (69.12%), Query Frame = 1
Query:    1 PYQIVEARALGADCVLLIVSALDDVKMAELAAVAKSVGLDVLVEVHDGDELERALKTLDTPLVGVNNRNLHTFEVSLENTXXXXXXXXXXXXVITESGIVNRADVELMEISGVYSFLVGETFMRAENPGAELQRLF 408
            PYQI EAR+ GADC+LLIV+ LD   MAEL A A  +G+ VLVEVH+G+EL  AL+ L T L+GVNNRNL TFE SL+ T            VITES IV   DV+ M  + V++FL+GETFMRA +PG EL RLF
Sbjct:  131 PYQIYEARSWGADCILLIVAGLDHGLMAELEACAHELGMHVLVEVHNGEELNAALR-LKTTLLGVNNRNLRTFETSLQTTLDLLPRIPPEKLVITESAIVTPDDVKKMRDADVHAFLIGETFMRAPDPGQELNRLF 265          
BLAST of EY684638 vs. ExPASy Swiss-Prot
Match: TRPC_VARPS (Indole-3-glycerol phosphate synthase OS=Variovorax paradoxus (strain S110) GN=trpC PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 8.260e-33
Identity = 73/135 (54.07%), Postives = 92/135 (68.15%), Query Frame = 1
Query:    4 YQIVEARALGADCVLLIVSALDDVKMAELAAVAKSVGLDVLVEVHDGDELERALKTLDTPLVGVNNRNLHTFEVSLENTXXXXXXXXXXXXVITESGIVNRADVELMEISGVYSFLVGETFMRAENPGAELQRLF 408
            YQ+ E+RA+GAD VLLI + LDD +M +  A+A+ +G+ VLVEVHD  ELERALK L TPL+GVNNRNL  FEVS++ T             +TESGI  R DV  +  +GV++FLVGE FMRA+ PG  L  LF
Sbjct:  132 YQVYESRAMGADAVLLIAACLDDAQMKDYEAIARGLGMAVLVEVHDAAELERALK-LKTPLIGVNNRNLRNFEVSIQATIDLLPRLPADRLAVTESGIATREDVATLRAAGVHAFLVGEAFMRAKEPGEALAALF 265          
BLAST of EY684638 vs. ExPASy Swiss-Prot
Match: TRPC_POLNS (Indole-3-glycerol phosphate synthase OS=Polynucleobacter necessarius (strain STIR1) GN=trpC PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 8.260e-33
Identity = 75/136 (55.15%), Postives = 97/136 (71.32%), Query Frame = 1
Query:    1 PYQIVEARALGADCVLLIVSALDDVKMAELAAVAKSVGLDVLVEVHDGDELERALKTLDTPLVGVNNRNLHTFEVSLENTXXXXXXXXXXXXVITESGIVNRADVELMEISGVYSFLVGETFMRAENPGAELQRLF 408
            PYQ+ EARA+GAD +LLIV+ L+  +M +L A A  +GLDVLVEVH+  ELE+AL+ L TPL+G+NNRNL TFEV+L+NT            ++TESGI++  DV+LM    V +FLVGE FMRA +PGA L  LF
Sbjct:  132 PYQVYEARAIGADAILLIVAYLELNQMKDLEACANELGLDVLVEVHNASELEQALE-LKTPLLGINNRNLKTFEVTLQNTLSLLSMVPNDKTLVTESGILSHTDVQLMRDHHVNAFLVGEAFMRAADPGAALSELF 266          
BLAST of EY684638 vs. ExPASy Swiss-Prot
Match: TRPC_LEPCP (Indole-3-glycerol phosphate synthase OS=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) GN=trpC PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 8.260e-33
Identity = 74/135 (54.81%), Postives = 96/135 (71.11%), Query Frame = 1
Query:    4 YQIVEARALGADCVLLIVSALDDVKMAELAAVAKSVGLDVLVEVHDGDELERALKTLDTPLVGVNNRNLHTFEVSLENTXXXXXXXXXXXXVITESGIVNRADVELMEISGVYSFLVGETFMRAENPGAELQRLF 408
            YQ+ EARA+GAD +LLI + LDD +MA+L AVA +  + VLVEVHD DEL+RAL+ L TPL+G+NNRNL TFEV+L+ T            ++TESGI+ R DV+ M  + V++FLVGE FMRA +PG  L  LF
Sbjct:  128 YQVHEARAMGADAILLIAACLDDAQMADLEAVALAHRMSVLVEVHDRDELQRALR-LKTPLLGINNRNLRTFEVTLDTTLGMLGEVPSDRLLVTESGILGRDDVQRMRAAQVHAFLVGEAFMRASDPGVALAALF 261          
BLAST of EY684638 vs. ExPASy Swiss-Prot
Match: TRPC_BORPA (Indole-3-glycerol phosphate synthase OS=Bordetella parapertussis GN=trpC PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.409e-32
Identity = 74/135 (54.81%), Postives = 92/135 (68.15%), Query Frame = 1
Query:    1 PYQIVEARALGADCVLLIVSALDDVKMAELAAVAKSVGLDVLVEVHDGDELERALKTLDTPLVGVNNRNLHTFEVSLENTXXXXXXXXXXXXVITESGIVNRADVELMEISGVYSFLVGETFMRAENPGAELQRL 405
            PYQI+ ARA+GADCVLLIV+AL   ++ +L  +A  +G+DVLVEVHD  EL+ AL  L TPL+G+NNRNL TFE +L+ T            V+TESGI+   DV LM    V +FLVGE FMRA +PG EL RL
Sbjct:  127 PYQIISARAMGADCVLLIVAALAPAQLRDLETLAIDLGMDVLVEVHDAKELDAAL-ALRTPLIGINNRNLRTFETTLQTTLDLLPMIPAGKRVVTESGILKPEDVRLMREHDVQAFLVGEAFMRANDPGVELARL 260          
The following BLAST results are available for this feature:
BLAST of EY684638 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 383
Match NameE-valueIdentityDescription
TRPC_ACISJ1.664e-3355.88Indole-3-glycerol phosphate synthase OS=Acidovorax... [more]
TRPC_ACIAC2.174e-3354.81Indole-3-glycerol phosphate synthase OS=Acidovorax... [more]
TRPC_DIAST2.839e-3355.88Indole-3-glycerol phosphate synthase OS=Diaphoroba... [more]
TRPC_VEREI4.843e-3352.94Indole-3-glycerol phosphate synthase OS=Verminephr... [more]
TRPC_THIDA4.843e-3357.78Indole-3-glycerol phosphate synthase OS=Thiobacill... [more]
TRPC_HERAR4.843e-3357.35Indole-3-glycerol phosphate synthase OS=Herminiimo... [more]
TRPC_VARPS8.260e-3354.07Indole-3-glycerol phosphate synthase OS=Variovorax... [more]
TRPC_POLNS8.260e-3355.15Indole-3-glycerol phosphate synthase OS=Polynucleo... [more]
TRPC_LEPCP8.260e-3354.81Indole-3-glycerol phosphate synthase OS=Leptothrix... [more]
TRPC_BORPA1.409e-3254.81Indole-3-glycerol phosphate synthase OS=Bordetella... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-015-E11-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684638 ID=EY684638; Name=EY684638; organism=Citrus sinensis; type=EST; length=851bp
CCCTACCAGATCGTCGAAGCTCGTGCCTTGGGCGCCGATTGCGTGCTGTT
GATCGTCTCCGCACTGGATGACGTGAAGATGGCCGAACTGGCGGCCGTGG
CCAAAAGCGTCGGCCTCGACGTGCTGGTGGAAGTGCACGACGGTGATGAA
CTGGAACGCGCGTTGAAAACCCTCGACACACCGTTGGTGGGCGTCAACAA
CCGCAACCTGCACACGTTTGAAGTCAGCCTGGAAAACACCCTCGACCTGT
TGCCGCGTATCCCGCGTGACCGGTTGGTGATTACCGAAAGTGGCATCGTC
AATCGCGCCGATGTCGAACTGATGGAAATCAGCGGCGTGTACTCGTTCCT
CGTCGGCGAAACCTTCATGCGTGCCGAGAACCCGGGGGCTGAATTGCAGC
GCCTGTTCTTCCCGGAGCGTGGCGTTGCTGTCAGCGGTTCGACCCTGGAT
TGATGATGACCCAGCCGGTGGCGATGACGGTCGAGGCAGGCCTTAAGGCC
GAGCAGGATTTGCTCGCCGCTGTCTGCGCGGGGGAGCAGCCGTTCGGCCT
GCTGTTCTGGCAGCCCAGCGATCCAACGTTGGTGATGCCTCCGCGTTTGA
GCCGACTTCCGGCATTCGAGACGCGCAGTCAGGTATCCGGCACGAGGCCG
GTTGCCCGGGGCTGCGTGCGGGAAGACGGCGGTGGACTGGGACCGGCACG
AAGAGGCGACGGACGAACCGTCCCTGGCGGGAGCGCAAGCAGCGGGGAGG
GCGTGAGCGAGGGGGGTCGCGAGCGGAGAGGGAGGGTTGTAAACGTGCAT
CCGGCGGCCCGCAACCCAACGGGGGAGCCGCCCCACCGGCCGCATGGGGG
G
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