EY684612

Overview
NameEY684612
Unique NameEY684612
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length871
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684612 vs. ExPASy Swiss-Prot
Match: MMSB_MYCTU (Probable 3-hydroxyisobutyrate dehydrogenase OS=Mycobacterium tuberculosis GN=mmsB PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.858e-36
Identity = 78/183 (42.62%), Postives = 107/183 (58.47%), Query Frame = 2
Query:    2 HASDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCV 550
            HA       + LDAPVSGGV  A A TL FMVGG E   + A+P+   M    I+CG AG G AAK+CNN+ +AV  + ++EA  L + LG+SA +L  ++  ++  CW+  +  PVPG +   PA+ ++  GF++ LM KDL LA+ +    G   PL S A DIYAK   + H   DFS V
Sbjct:  103 HALAESHGMLQLDAPVSGGVKGAAAATLAFMVGGDESTLRRARPVLEPMAGKIIHCGAAGAGQAAKVCNNMVLAVQQIAIAEAFVLAEKLGLSAQSLFDVITGATGNCWAVHTNCPVPGPVPTSPANNDFKPGFSTALMNKDLGLAMDAVAATGATAPLGSHAADIYAKFAAD-HADLDFSAV 284          
BLAST of EY684612 vs. ExPASy Swiss-Prot
Match: MMSB_MYCBO (Probable 3-hydroxyisobutyrate dehydrogenase OS=Mycobacterium bovis GN=mmsB PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.858e-36
Identity = 78/183 (42.62%), Postives = 107/183 (58.47%), Query Frame = 2
Query:    2 HASDSWENPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCV 550
            HA       + LDAPVSGGV  A A TL FMVGG E   + A+P+   M    I+CG AG G AAK+CNN+ +AV  + ++EA  L + LG+SA +L  ++  ++  CW+  +  PVPG +   PA+ ++  GF++ LM KDL LA+ +    G   PL S A DIYAK   + H   DFS V
Sbjct:  103 HALAESHGMLQLDAPVSGGVKGAAAATLAFMVGGDESTLRRARPVLEPMAGKIIHCGAAGAGQAAKVCNNMVLAVQQIAIAEAFVLAEKLGLSAQSLFDVITGATGNCWAVHTNCPVPGPVPTSPANNDFKPGFSTALMNKDLGLAMDAVAATGATAPLGSHAADIYAKFAAD-HADLDFSAV 284          
BLAST of EY684612 vs. ExPASy Swiss-Prot
Match: YKWC_BACSU (Uncharacterized oxidoreductase ykwC OS=Bacillus subtilis GN=ykwC PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 2.053e-26
Identity = 63/174 (36.21%), Postives = 99/174 (56.90%), Query Frame = 2
Query:   35 LDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQ 556
            LDAPVSGG + A+ GTL  MVGG ++A++A  P+F  MG+N  Y G AG+G   K+CN + +A  M+GV+EA+   Q  G+    + K + + +A  WS    N  P +++G     N+  GF  K   KD+ +AL  A+ +G + P  S A+ +Y KL   G ++     +++
Sbjct:  118 LDAPVSGGDIGAQNGTLAIMVGGEKEAFEACMPIFSLMGENIQYQGPAGSGQHTKMCNQIAIAAGMIGVAEAMAYAQKSGLEPENVLKSITTGAAGSWSLS--NLAPRMLQG-----NFEPGFYVKHFIKDMGIALEEAELMGEEMPGLSLAKSLYDKLAAQGEENSGTQSIYK 284          
BLAST of EY684612 vs. ExPASy Swiss-Prot
Match: GLXR_ECOLI (2-hydroxy-3-oxopropionate reductase OS=Escherichia coli (strain K12) GN=glxR PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.989e-21
Identity = 63/174 (36.21%), Postives = 88/174 (50.57%), Query Frame = 2
Query:   35 LDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQ 556
            LDAPVSGG + A  GTL+ MVGG E  ++  KPLF  +GKN    GG G+G   K+ N + +A+++  VSEAL      G     + + L       ++S     V G        R +  GF   L  KDLNLAL SAK + ++ P T+  Q+++     NG    D S + Q
Sbjct:  115 LDAPVSGGEIGAREGTLSIMVGGDEAVFERVKPLFELLGKNITLVGGNGDGQTCKVANQIIVALNIEAVSEALLFASKAGADPVRVRQALMGG----FASSRILEVHGER---MIKRTFNPGFKIALHQKDLNLALQSAKALALNLPNTATCQELFNTCAANGGSQLDHSALVQ 281          
BLAST of EY684612 vs. ExPASy Swiss-Prot
Match: Y229_SYNY3 (Uncharacterized oxidoreductase slr0229 OS=Synechocystis sp. (strain PCC 6803) GN=slr0229 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 8.647e-17
Identity = 52/176 (29.55%), Postives = 90/176 (51.14%), Query Frame = 2
Query:   35 LDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHY 562
            LDAPV+GG + A  GTLT MVGG    ++ A P+  S+G+  ++CG +G+G A K+CN +   +  +  +EA+ L + LGI+   +     S +A  W+    N  P + E      ++  GF  K + KDL L   +A+   +  P  + A+ ++  +   G + +    + + Y
Sbjct:  121 LDAPVTGGDVGAINGTLTIMVGGDISDFEEALPVLKSIGEKIVHCGPSGSGQAVKLCNQVLCGIHAIAAAEAIQLSEQLGIAPELVIDTCGSGAAGSWALT--NLAPKMSEA-----DFAPGFMVKHLLKDLRLVREAAENGPL--PGVTLAESLFTSVQLLGGEDQGSQAIIRAY 287          
BLAST of EY684612 vs. ExPASy Swiss-Prot
Match: GARR_ECOLI (2-hydroxy-3-oxopropionate reductase OS=Escherichia coli (strain K12) GN=garR PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 7.320e-16
Identity = 57/177 (32.20%), Postives = 89/177 (50.28%), Query Frame = 2
Query:   32 MLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHY 562
            MLDAPVSGG   A  GTL+ MVGG +  +     L  +M  + ++ G  G G   K+ N + +A+++  +SEALTL    G++   + + +    A     D+  P+  VM+     RN+  GF   L  KDL  AL ++  VG   PLT+   ++   L  +G  + D S +  +Y
Sbjct:  115 MLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAGSVVHTGEIGAGNVTKLANQVIVALNIAAMSEALTLATKAGVNPDLVYQAIRGGLAGSTVLDAKAPM--VMD-----RNFKPGFRIDLHIKDLANALDTSHGVGAQLPLTAAVMEMMQALRADGLGTADHSALACYY 284          
BLAST of EY684612 vs. ExPASy Swiss-Prot
Match: GARR_ECOL6 (2-hydroxy-3-oxopropionate reductase OS=Escherichia coli O6 GN=garR PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 7.320e-16
Identity = 57/177 (32.20%), Postives = 89/177 (50.28%), Query Frame = 2
Query:   32 MLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHY 562
            MLDAPVSGG   A  GTL+ MVGG +  +     L  +M  + ++ G  G G   K+ N + +A+++  +SEALTL    G++   + + +    A     D+  P+  VM+     RN+  GF   L  KDL  AL ++  VG   PLT+   ++   L  +G  + D S +  +Y
Sbjct:  115 MLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAGSVVHTGEIGAGNVTKLANQVIVALNIAAMSEALTLATKAGVNPDLVYQAIRGGLAGSTVLDAKAPM--VMD-----RNFKPGFRIDLHIKDLANALDTSHGVGAQLPLTAAVMEMMQALRADGLGTADHSALACYY 284          
BLAST of EY684612 vs. ExPASy Swiss-Prot
Match: GLYR1_XENTR (Putative oxidoreductase GLYR1 OS=Xenopus tropicalis GN=glyr1 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.197e-15
Identity = 51/176 (28.98%), Postives = 77/176 (43.75%), Query Frame = 2
Query:   35 LDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHY 562
            L+APVSG    +  G L  +  G +  Y+     FL+MGK + + G  GN A   +  N+     M  ++E +TL Q  G S  TL  ILN         D       +++G     N+   F  K + KDL LA+A    V    P+ + A ++Y +         D S V++ Y
Sbjct:  364 LEAPVSGNQQLSNDGMLVILAAGDQGVYEDCSSCFLAMGKTSFFLGEVGNAARMMLILNMVQGSFMATIAEGMTLAQVTGQSQQTLLDILNQGQLASIFLD--QKCQNILQG-----NFKPDFYLKYIQKDLRLAIALGDSVNHPTPMAAAANEVYKRAKALDQSDNDMSAVYRAY 532          
BLAST of EY684612 vs. ExPASy Swiss-Prot
Match: Y1503_SHEFN (Uncharacterized oxidoreductase Sfri_1503 OS=Shewanella frigidimarina (strain NCIMB 400) GN=Sfri_1503 PE=3 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 8.093e-15
Identity = 48/163 (29.45%), Postives = 79/163 (48.47%), Query Frame = 2
Query:   23 NPVMLDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKL 511
            N   LDAPVSGG   AE G LT M+GG +  +   KP+  +  +     G  G G   K+ N + +A  + G++E L   +S G+    + ++++  +A+ W  +  N    + +G      Y  GFA   M KDL +AL  A+  G   P+ +     Y+++
Sbjct:  114 NIAFLDAPVSGGQAGAENGALTVMMGGDQAHFDTVKPVISAYSRCAELLGPVGAGQLTKMVNQICIAGVVQGLAEGLHFAKSAGLDGLKVIEVISKGAAQSWQME--NRYKTMWQG-----QYDFGFAIDWMRKDLGIALDEARRNGSHLPVAALVDQFYSEV 269          
BLAST of EY684612 vs. ExPASy Swiss-Prot
Match: GLYR1_CHICK (Putative oxidoreductase GLYR1 OS=Gallus gallus GN=GLYR1 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.017e-14
Identity = 51/176 (28.98%), Postives = 75/176 (42.61%), Query Frame = 2
Query:   35 LDAPVSGGVLAAEAGTLTFMVGGSEDAYQAAKPLFLSMGKNTIYCGGAGNGAAAKICNNLTMAVSMLGVSEALTLGQSLGISASTLTKILNSSSARCWSSDSYNPVPGVMEGVPASRNYGGGFASKLMAKDLNLALASAKEVGVDCPLTSQAQDIYAKLCENGHDSKDFSCVFQHY 562
            L+APVSG    +  G L  +  G    Y+     F +MGK + + G  GN A   +  N+     M  ++E LTL Q  G S  TL  ILN         D       +++G     N+   F  K + KDL LA+A    V    P+ + A ++Y +         D S V++ Y
Sbjct:  383 LEAPVSGNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFLGEVGNAAKMMLIVNMVQGSFMATIAEGLTLAQVTGQSQQTLLDILNQGQLASIFLD--QKCQNILQG-----NFKPDFYLKYIQKDLRLAIALGDSVNHPTPMAAAANEVYKRAKALDQSDNDMSAVYRAY 551          
The following BLAST results are available for this feature:
BLAST of EY684612 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
MMSB_MYCTU2.858e-3642.62Probable 3-hydroxyisobutyrate dehydrogenase OS=Myc... [more]
MMSB_MYCBO2.858e-3642.62Probable 3-hydroxyisobutyrate dehydrogenase OS=Myc... [more]
YKWC_BACSU2.053e-2636.21Uncharacterized oxidoreductase ykwC OS=Bacillus su... [more]
GLXR_ECOLI1.989e-2136.212-hydroxy-3-oxopropionate reductase OS=Escherichia... [more]
Y229_SYNY38.647e-1729.55Uncharacterized oxidoreductase slr0229 OS=Synechoc... [more]
GARR_ECOLI7.320e-1632.202-hydroxy-3-oxopropionate reductase OS=Escherichia... [more]
GARR_ECOL67.320e-1632.202-hydroxy-3-oxopropionate reductase OS=Escherichia... [more]
GLYR1_XENTR6.197e-1528.98Putative oxidoreductase GLYR1 OS=Xenopus tropicali... [more]
Y1503_SHEFN8.093e-1529.45Uncharacterized oxidoreductase Sfri_1503 OS=Shewan... [more]
GLYR1_CHICK4.017e-1428.98Putative oxidoreductase GLYR1 OS=Gallus gallus GN=... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-015-C04-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684612 ID=EY684612; Name=EY684612; organism=Citrus sinensis; type=EST; length=871bp
CCACGCGTCCGATTCATGGGAAAACCCTGTCATGTTGGATGCTCCCGTCT
CTGGGGGTGTTCTTGCTGCAGAGGCTGGTACACTAACTTTCATGGTTGGT
GGCTCTGAGGATGCATATCAGGCTGCAAAACCCTTGTTCCTCTCAATGGG
GAAAAACACAATATACTGTGGTGGAGCAGGAAATGGGGCGGCAGCAAAAA
TTTGCAATAACTTGACAATGGCTGTGAGCATGCTTGGGGTGTCAGAAGCC
CTGACACTTGGTCAGTCGCTAGGAATATCTGCTAGTACTCTAACAAAGAT
ATTGAACTCTTCAAGTGCTCGCTGTTGGAGTAGTGACAGTTATAATCCTG
TTCCTGGGGTGATGGAAGGGGTGCCGGCTTCAAGGAATTATGGTGGTGGG
TTTGCATCTAAGCTCATGGCCAAAGACTTGAACCTTGCTTTGGCATCAGC
AAAAGAGGTTGGCGTCGATTGCCCGTTAACATCACAAGCACAAGACATAT
ACGCGAAGCTCTGTGAGAATGGACATGATTCCAAGGACTTCTCCTGCGTT
TTCCAGCATTATTATGGAGGCAAGGATGAAGTTTAGCTTCAACATTCAAG
GACACTGCTTTTACCAATCCATTCTGATTCTCTTGTAAAATCAAAGCGCA
TTCAATCGAAATTAACCTCCCTAAGGCTCGTCCCTTTTCACAGAATAAAT
TGCAGCCTATAAAATCTTTTTCAGGTATATGAATATTTACCCCTGAAGAG
ATAGAGATAGAGAATCCTGGTATATGCATGTTGGAAAACCAATTAACCAA
TGGGCTTTTTCTTGGCCAAAAAAANAAAACANCNGNGCGCGTGNGTGGAA
AAAAGAAGCGAAAAAGAAAGG
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