EY684593

Overview
NameEY684593
Unique NameEY684593
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length884
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684593 vs. ExPASy Swiss-Prot
Match: NARF_DROER (Probable cytosolic Fe-S cluster assembly factor GG21400 OS=Drosophila erecta GN=GG21400 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.966e-24
Identity = 58/125 (46.40%), Postives = 86/125 (68.80%), Query Frame = 1
Query:   10 REGKTLLKFALCYGFQNLQNIVRKVKMRKC-DYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKSITAQLH-NW 378
            + G T+LKFA+  GF+N+QN+V K+K  K  +Y FVEVMACPSGC+NGG QI+P  GQ  +EL + LE +Y  N+  +DP +N L + +Y ++L+   +EK+ + +HT YH VV  ++  L+ NW
Sbjct:  355 KNGNTVLKFAIANGFRNIQNLVHKLKRGKVSNYHFVEVMACPSGCINGGAQIRPTTGQHVRELTRKLEELY-HNLPQSDP-ENSLTKLIYTDFLDGFQTEKSYELLHTRYHDVVSELSKSLNINW 477          
BLAST of EY684593 vs. ExPASy Swiss-Prot
Match: NARF_CULQU (Probable cytosolic Fe-S cluster assembly factor CPIJ010948 OS=Culex quinquefasciatus GN=CPIJ010948 PE=3 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 1.966e-24
Identity = 54/124 (43.55%), Postives = 82/124 (66.13%), Query Frame = 1
Query:   10 REGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKH-VHTEYHPVVKSITAQLHNW 378
            + G+ +L+FA+  GF+N+QN+V+K+K  KC+Y ++E+MACPSGCLNGG QI+P  GQS +EL   LE +Y  ++  ++P +N  V  +Y  +L+  G    +K  +HT YHP+ K  TA    W
Sbjct:  357 QNGEVVLRFAIANGFRNIQNMVQKLKRGKCNYHYIEIMACPSGCLNGGAQIRPTGGQSQRELTAELEALY-RSLPASNP-ENEAVEMVYTTFLDNAGDNNMRKEFLHTSYHPIEKMNTALNIKW 478          
BLAST of EY684593 vs. ExPASy Swiss-Prot
Match: NARFL_HUMAN (Cytosolic Fe-S cluster assembly factor NARFL OS=Homo sapiens GN=NARFL PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.353e-24
Identity = 56/123 (45.53%), Postives = 81/123 (65.85%), Query Frame = 1
Query:   10 REGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKSITAQLHNW 378
            +EG+ LL FA+ YGF+N+QN+V+++K  +C Y +VEVMACPSGCLNGGGQ++  P +  +EL++ +E +Y   V    P   P V+ LY  WL+   SE A + +HT+YH V K+ T     W
Sbjct:  356 KEGQVLLHFAMAYGFRNIQNLVQRLKRGRCPYHYVEVMACPSGCLNGGGQLQ-APDRPSRELLQHVERLY-GMVRAEAPEDAPGVQELYTHWLQGTDSECAGRLLHTQYHAVEKASTGLGIRW 476          
BLAST of EY684593 vs. ExPASy Swiss-Prot
Match: NARF_DICDI (Probable cytosolic Fe-S cluster assembly factor narfl OS=Dictyostelium discoideum GN=narfl PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.274e-23
Identity = 55/129 (42.64%), Postives = 76/129 (58.91%), Query Frame = 1
Query:   13 EGKTLLKFALCYGFQNLQNIVRKVKMR-------KCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKSITAQLHNW 378
            +GK +L FA  YGF+N+QNIVRK+K            Y FVE+MACPSGC+NGGGQIK    +  K ++   E  Y ENV+   P  N  V+++Y+ WL    S  +K ++HT+YH + K+  A    W
Sbjct:  394 DGKKVLNFAQAYGFRNIQNIVRKIKTNITTKKDTNSQYDFVEIMACPSGCINGGGQIKSDAIKENKAILLDSEEKYNENVIFRQPIDNQSVQNIYNTWLNGCFSTDSKTNLHTQYHRIEKTTNALNIKW 522          
BLAST of EY684593 vs. ExPASy Swiss-Prot
Match: NARFL_PONAB (Cytosolic Fe-S cluster assembly factor NARFL OS=Pongo abelii GN=NARFL PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.664e-23
Identity = 55/123 (44.72%), Postives = 80/123 (65.04%), Query Frame = 1
Query:   10 REGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKSITAQLHNW 378
            +EG+ LL  A+ YGF+N+QN+V+++K  +C Y +VEVMACPSGCLNGGGQ++  P +  +EL++ +E +Y   V    P   P V+ LY  WL+   SE A + +HT+YH V K+ T     W
Sbjct:  356 KEGQVLLHLAMAYGFRNIQNLVQRLKRGRCPYHYVEVMACPSGCLNGGGQLQ-APDRPSRELLQHVERLY-GMVRAEAPEDAPGVQELYTHWLQGTDSECAGRLLHTQYHAVEKASTGLGIRW 476          
BLAST of EY684593 vs. ExPASy Swiss-Prot
Match: NARF_DROVI (Probable cytosolic Fe-S cluster assembly factor GJ13047 OS=Drosophila virilis GN=GJ13047 PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 3.139e-22
Identity = 54/124 (43.55%), Postives = 83/124 (66.94%), Query Frame = 1
Query:   10 REGKTLLKFALCYGFQNLQNIVRKVKMRKCD-YQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKSITAQLHNW 378
            ++GKT+LKFA+  GF+N+QN+V+K+K  K   Y FVEVMACPSGC+NGG Q++P  GQ  +EL + LE +Y + +  ++P  N   + +Y ++L+   ++K+ + +HT YH V K  TA    W
Sbjct:  355 KDGKTVLKFAIANGFRNIQNLVQKLKRGKGPGYHFVEVMACPSGCINGGAQVRPTTGQHVRELTQQLEELY-KQLPRSNP-DNSYTKQIYTDFLDGAHTDKSLELLHTSYHAVEKLNTALNIKW 476          
BLAST of EY684593 vs. ExPASy Swiss-Prot
Match: NARF_DROWI (Probable cytosolic Fe-S cluster assembly factor GK14772 OS=Drosophila willistoni GN=GK14772 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 4.099e-22
Identity = 53/124 (42.74%), Postives = 83/124 (66.94%), Query Frame = 1
Query:   10 REGKTLLKFALCYGFQNLQNIVRKVKMRK-CDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKSITAQLHNW 378
            ++ KT+LKFA+  GF+N+QN+V+K+K  K  +Y FVEVMACPSGC+NGG Q++P  GQ  +EL + LE +Y + + ++ P  N   +++Y ++L+   ++K+   +HT YH V K  TA    W
Sbjct:  356 KDDKTVLKFAIANGFRNIQNLVQKLKRGKGANYHFVEVMACPSGCINGGAQVRPTTGQHVRELTQQLEELY-KKLPISQP-DNSHTKAIYGDFLDGAHTDKSHDLLHTSYHAVEKLNTALNIKW 477          
BLAST of EY684593 vs. ExPASy Swiss-Prot
Match: NARF_DROGR (Probable cytosolic Fe-S cluster assembly factor GH10760 OS=Drosophila grimshawi GN=GH10760 PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 6.992e-22
Identity = 54/124 (43.55%), Postives = 82/124 (66.13%), Query Frame = 1
Query:   10 REGKTLLKFALCYGFQNLQNIVRKVKMRKCD-YQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKSITAQLHNW 378
            +EGK LLKFA+  GF+N+QN+V+K+K  K   YQFVEVMACPSGC+NGG Q++P  GQ  ++L + LE +Y + +  ++P  N   + +Y ++ +   ++K+ + +HT YH V K  TA    W
Sbjct:  355 KEGKVLLKFAIANGFRNIQNLVQKLKRGKGPGYQFVEVMACPSGCINGGAQVRPTTGQHVRQLTQQLEELY-KQLPRSNP-DNTHTKQIYADFFDGTHTDKSAQLLHTSYHAVEKLNTALNIKW 476          
BLAST of EY684593 vs. ExPASy Swiss-Prot
Match: NARF_XENLA (Nuclear prelamin A recognition factor OS=Xenopus laevis GN=narf PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.193e-21
Identity = 46/108 (42.59%), Postives = 75/108 (69.44%), Query Frame = 1
Query:   10 REGKTLLKFALCYGFQNLQNIVRKVKMRKCDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTE 333
            ++G+T+L+FA  YGF+N+QN+V K++  K  Y FVEV+ACP GCLNG GQ +   G+  + L+  +E +Y   V + +P  NP +++LY++WL+   S+K K+ +HT+
Sbjct:  335 KDGETVLRFAAAYGFRNIQNMVLKLRKGKFHYHFVEVLACPGGCLNGKGQAQTMDGKVERALLHEMEEVY-TRVPIQNPESNPHIQALYEDWLQGAESQKTKQTLHTK 441          
BLAST of EY684593 vs. ExPASy Swiss-Prot
Match: NARF_DROPS (Probable cytosolic Fe-S cluster assembly factor GA29080 OS=Drosophila pseudoobscura pseudoobscura GN=GA29080 PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.558e-21
Identity = 53/124 (42.74%), Postives = 81/124 (65.32%), Query Frame = 1
Query:   10 REGKTLLKFALCYGFQNLQNIVRKVKMRK-CDYQFVEVMACPSGCLNGGGQIKPKPGQSPKELIKTLETIYLENVMLADPFKNPLVRSLYDEWLEQPGSEKAKKHVHTEYHPVVKSITAQLHNW 378
            ++ KT+LKFA+  GF+N+QN+V+K+K  K   Y FVEVMACPSGC+NGG Q++P  GQ  +EL + LE +Y + +  + P  N   + +Y ++L+   ++K+ + +HT YH V K  TA    W
Sbjct:  356 KDDKTVLKFAIANGFRNIQNLVQKLKRGKGASYHFVEVMACPSGCINGGAQVRPTTGQHVRELTQQLEELY-KKLPRSQP-DNAHTKLIYRDFLDGSHTDKSNELLHTSYHAVEKLSTALNIKW 477          
The following BLAST results are available for this feature:
BLAST of EY684593 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
NARF_DROER1.966e-2446.40Probable cytosolic Fe-S cluster assembly factor GG... [more]
NARF_CULQU1.966e-2443.55Probable cytosolic Fe-S cluster assembly factor CP... [more]
NARFL_HUMAN3.353e-2445.53Cytosolic Fe-S cluster assembly factor NARFL OS=Ho... [more]
NARF_DICDI1.274e-2342.64Probable cytosolic Fe-S cluster assembly factor na... [more]
NARFL_PONAB1.664e-2344.72Cytosolic Fe-S cluster assembly factor NARFL OS=Po... [more]
NARF_DROVI3.139e-2243.55Probable cytosolic Fe-S cluster assembly factor GJ... [more]
NARF_DROWI4.099e-2242.74Probable cytosolic Fe-S cluster assembly factor GK... [more]
NARF_DROGR6.992e-2243.55Probable cytosolic Fe-S cluster assembly factor GH... [more]
NARF_XENLA1.193e-2142.59Nuclear prelamin A recognition factor OS=Xenopus l... [more]
NARF_DROPS1.558e-2142.74Probable cytosolic Fe-S cluster assembly factor GA... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-015-A05-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684593 ID=EY684593; Name=EY684593; organism=Citrus sinensis; type=EST; length=884bp
CCACGCGTCCGGGAGGGAAAAACGTTGTTGAAATTTGCCCTATGTTATGG
CTTCCAGAACCTGCAAAACATTGTCAGGAAAGTGAAAATGCGAAAATGCG
ATTATCAATTTGTGGAGGTCATGGCATGCCCTTCAGGTTGCTTGAATGGT
GGAGGTCAGATCAAGCCTAAGCCAGGGCAATCACCGAAGGAGTTGATTAA
GACACTGGAAACCATCTATTTGGAAAATGTAATGCTAGCTGATCCTTTCA
AAAATCCTCTGGTGAGAAGCTTGTATGATGAGTGGCTTGAGCAACCTGGT
TCAGAGAAAGCTAAAAAGCACGTGCACACAGAATACCATCCTGTAGTGAA
AAGTATCACTGCTCAGTTGCATAATTGGTGAAAGCATTTACCATCCCAAC
ACTTGATCGTATACAAATTTGGAACTATAGAACTCTCTTCTTGTGCCCCA
TGCCGTCTCCAAGTTGTTTTAGCAATTTCAGACATGGCACCACAGCGATG
CTGGCCATTTTTTGTCAATCATGGGATTGCATTTGCAGGGGAGTCCAATT
TTGATAGGGTAAACATATATTTATTTACTTCAAAGGTTTTCACTCATGTA
CATACTCTGTATTAGAAATGTTACATATAAAAGAAAGCATTGAGTTAGAC
ACTGATGCGTCATGGCACTTAATTTCATTTCCCTTGGGTCATTTTTTCTT
AGTTGAAAAGGCCCGATAAGGGTCCCTTTGGCTCCTGTACATAAGCATTT
ATTTTGGAAACCTGAAACTCCCCATTTTTGGTAGGGAAAATTGGAATTTT
TGGGGGAATGGTGTGGCCTTGACCCTGGAAAACAAAAAAATGGTCCTTGG
TTGTTCGCCAACCTCCCCCCGGGGGTGAAAGCAT
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