EY684548

Overview
NameEY684548
Unique NameEY684548
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length945
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY684548 vs. ExPASy Swiss-Prot
Match: NFI_SHIF8 (Endonuclease V OS=Shigella flexneri serotype 5b (strain 8401) GN=nfi PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.655e-14
Identity = 40/108 (37.04%), Postives = 66/108 (61.11%), Query Frame = 3 
Query:  378 IGGVDMSFSKEDPSIACGCIVVLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQVLMVDGNGLLHPRGFGLASHIGVLADLTTIGVGK 701
            I G D+ F ++   +    +V+L   +L++V    + +   +PY+PGFL+FRE P LL+  + + ++     P ++ VDG+G+ HPR  G+ASH G+L D+ TIGV K
Sbjct:   31 IAGADVGF-EQGGEVTRAAMVLLKYPSLELVEYKVARIATTMPYIPGFLSFREYPALLAAWEMLSQK-----PDLVFVDGHGISHPRRLGVASHFGLLVDVPTIGVAK 132
[Close]
BLAST of EY684548 vs. ExPASy Swiss-Prot
Match: NFI_SHIDS (Endonuclease V OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=nfi PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.655e-14
Identity = 40/108 (37.04%), Postives = 66/108 (61.11%), Query Frame = 3 
Query:  378 IGGVDMSFSKEDPSIACGCIVVLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQVLMVDGNGLLHPRGFGLASHIGVLADLTTIGVGK 701
            I G D+ F ++   +    +V+L   +L++V    + +   +PY+PGFL+FRE P LL+  + + ++     P ++ VDG+G+ HPR  G+ASH G+L D+ TIGV K
Sbjct:   31 IAGADVGF-EQGGEVTRAAMVLLKYPSLELVEYKVARIATTMPYIPGFLSFREYPALLAAWEMLSQK-----PDLVFVDGHGISHPRRLGVASHFGLLVDVPTIGVAK 132
[Close]
BLAST of EY684548 vs. ExPASy Swiss-Prot
Match: NFI_ESCF3 (Endonuclease V OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=nfi PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.655e-14
Identity = 40/108 (37.04%), Postives = 66/108 (61.11%), Query Frame = 3 
Query:  378 IGGVDMSFSKEDPSIACGCIVVLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQVLMVDGNGLLHPRGFGLASHIGVLADLTTIGVGK 701
            I G D+ F ++   +    +V+L   +L++V    + +   +PY+PGFL+FRE P LL+  + + ++     P ++ VDG+G+ HPR  G+ASH G+L D+ TIGV K
Sbjct:   31 IAGADVGF-EQGGEVTRAAMVLLKYPSLELVEYKVARIATTMPYIPGFLSFREYPALLAAWEMLSQK-----PDLVFVDGHGISHPRRLGVASHFGLLVDVPTIGVAK 132
[Close]
BLAST of EY684548 vs. ExPASy Swiss-Prot
Match: NFI_ECOUT (Endonuclease V OS=Escherichia coli (strain UTI89 / UPEC) GN=nfi PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.655e-14
Identity = 40/108 (37.04%), Postives = 66/108 (61.11%), Query Frame = 3 
Query:  378 IGGVDMSFSKEDPSIACGCIVVLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQVLMVDGNGLLHPRGFGLASHIGVLADLTTIGVGK 701
            I G D+ F ++   +    +V+L   +L++V    + +   +PY+PGFL+FRE P LL+  + + ++     P ++ VDG+G+ HPR  G+ASH G+L D+ TIGV K
Sbjct:   31 IAGADVGF-EQGGEVTRAAMVLLKYPSLELVEYKVARIATTMPYIPGFLSFREYPALLAAWEMLSQK-----PDLVFVDGHGISHPRRLGVASHFGLLVDVPTIGVAK 132
[Close]
BLAST of EY684548 vs. ExPASy Swiss-Prot
Match: NFI_ECOSM (Endonuclease V OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=nfi PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.655e-14
Identity = 40/108 (37.04%), Postives = 66/108 (61.11%), Query Frame = 3 
Query:  378 IGGVDMSFSKEDPSIACGCIVVLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQVLMVDGNGLLHPRGFGLASHIGVLADLTTIGVGK 701
            I G D+ F ++   +    +V+L   +L++V    + +   +PY+PGFL+FRE P LL+  + + ++     P ++ VDG+G+ HPR  G+ASH G+L D+ TIGV K
Sbjct:   31 IAGADVGF-EQGGEVTRAAMVLLKYPSLELVEYKVARIATTMPYIPGFLSFREYPALLAAWEMLSQK-----PDLVFVDGHGISHPRRLGVASHFGLLVDVPTIGVAK 132
[Close]
BLAST of EY684548 vs. ExPASy Swiss-Prot
Match: NFI_ECOLU (Endonuclease V OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=nfi PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.655e-14
Identity = 40/108 (37.04%), Postives = 66/108 (61.11%), Query Frame = 3 
Query:  378 IGGVDMSFSKEDPSIACGCIVVLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQVLMVDGNGLLHPRGFGLASHIGVLADLTTIGVGK 701
            I G D+ F ++   +    +V+L   +L++V    + +   +PY+PGFL+FRE P LL+  + + ++     P ++ VDG+G+ HPR  G+ASH G+L D+ TIGV K
Sbjct:   31 IAGADVGF-EQGGEVTRAAMVLLKYPSLELVEYKVARIATTMPYIPGFLSFREYPALLAAWEMLSQK-----PDLVFVDGHGISHPRRLGVASHFGLLVDVPTIGVAK 132
[Close]
BLAST of EY684548 vs. ExPASy Swiss-Prot
Match: NFI_ECOLI (Endonuclease V OS=Escherichia coli (strain K12) GN=nfi PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.655e-14
Identity = 40/108 (37.04%), Postives = 66/108 (61.11%), Query Frame = 3 
Query:  378 IGGVDMSFSKEDPSIACGCIVVLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQVLMVDGNGLLHPRGFGLASHIGVLADLTTIGVGK 701
            I G D+ F ++   +    +V+L   +L++V    + +   +PY+PGFL+FRE P LL+  + + ++     P ++ VDG+G+ HPR  G+ASH G+L D+ TIGV K
Sbjct:   31 IAGADVGF-EQGGEVTRAAMVLLKYPSLELVEYKVARIATTMPYIPGFLSFREYPALLAAWEMLSQK-----PDLVFVDGHGISHPRRLGVASHFGLLVDVPTIGVAK 132
[Close]
BLAST of EY684548 vs. ExPASy Swiss-Prot
Match: NFI_ECOLC (Endonuclease V OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=nfi PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.655e-14
Identity = 40/108 (37.04%), Postives = 66/108 (61.11%), Query Frame = 3 
Query:  378 IGGVDMSFSKEDPSIACGCIVVLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQVLMVDGNGLLHPRGFGLASHIGVLADLTTIGVGK 701
            I G D+ F ++   +    +V+L   +L++V    + +   +PY+PGFL+FRE P LL+  + + ++     P ++ VDG+G+ HPR  G+ASH G+L D+ TIGV K
Sbjct:   31 IAGADVGF-EQGGEVTRAAMVLLKYPSLELVEYKVARIATTMPYIPGFLSFREYPALLAAWEMLSQK-----PDLVFVDGHGISHPRRLGVASHFGLLVDVPTIGVAK 132
[Close]
BLAST of EY684548 vs. ExPASy Swiss-Prot
Match: NFI_ECOL6 (Endonuclease V OS=Escherichia coli O6 GN=nfi PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.655e-14
Identity = 40/108 (37.04%), Postives = 66/108 (61.11%), Query Frame = 3 
Query:  378 IGGVDMSFSKEDPSIACGCIVVLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQVLMVDGNGLLHPRGFGLASHIGVLADLTTIGVGK 701
            I G D+ F ++   +    +V+L   +L++V    + +   +PY+PGFL+FRE P LL+  + + ++     P ++ VDG+G+ HPR  G+ASH G+L D+ TIGV K
Sbjct:   31 IAGADVGF-EQGGEVTRAAMVLLKYPSLELVEYKVARIATTMPYIPGFLSFREYPALLAAWEMLSQK-----PDLVFVDGHGISHPRRLGVASHFGLLVDVPTIGVAK 132
[Close]
BLAST of EY684548 vs. ExPASy Swiss-Prot
Match: NFI_ECOL5 (Endonuclease V OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=nfi PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.655e-14
Identity = 40/108 (37.04%), Postives = 66/108 (61.11%), Query Frame = 3 
Query:  378 IGGVDMSFSKEDPSIACGCIVVLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQVLMVDGNGLLHPRGFGLASHIGVLADLTTIGVGK 701
            I G D+ F ++   +    +V+L   +L++V    + +   +PY+PGFL+FRE P LL+  + + ++     P ++ VDG+G+ HPR  G+ASH G+L D+ TIGV K
Sbjct:   31 IAGADVGF-EQGGEVTRAAMVLLKYPSLELVEYKVARIATTMPYIPGFLSFREYPALLAAWEMLSQK-----PDLVFVDGHGISHPRRLGVASHFGLLVDVPTIGVAK 132
The following BLAST results are available for this feature:
BLAST of EY684548 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 113
Match NameE-valueIdentityDescription
NFI_SHIF82.655e-1437.04Endonuclease V OS=Shigella flexneri serotype 5b (s... [more]
NFI_SHIDS2.655e-1437.04Endonuclease V OS=Shigella dysenteriae serotype 1 ... [more]
NFI_ESCF32.655e-1437.04Endonuclease V OS=Escherichia fergusonii (strain A... [more]
NFI_ECOUT2.655e-1437.04Endonuclease V OS=Escherichia coli (strain UTI89 /... [more]
NFI_ECOSM2.655e-1437.04Endonuclease V OS=Escherichia coli (strain SMS-3-5... [more]
NFI_ECOLU2.655e-1437.04Endonuclease V OS=Escherichia coli O17:K52:H18 (st... [more]
NFI_ECOLI2.655e-1437.04Endonuclease V OS=Escherichia coli (strain K12) GN... [more]
NFI_ECOLC2.655e-1437.04Endonuclease V OS=Escherichia coli (strain ATCC 87... [more]
NFI_ECOL62.655e-1437.04Endonuclease V OS=Escherichia coli O6 GN=nfi PE=3 ... [more]
NFI_ECOL52.655e-1437.04Endonuclease V OS=Escherichia coli O6:K15:H31 (str... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-001-D08-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684548 ID=EY684548; Name=EY684548; organism=Citrus sinensis; type=EST; length=945bp
TCCGACCCACGCGTCCGCTTTATGTTTCCACTGTACAATCCAGAAACAAT
TTTTTTTTTTTTTTTAAAAGGAAAAGAATTCAGGAGTGCAGCAGCCACAT
CATCGAAGAGAATTTCATTCAATCCCCGAGCAAATGTCTTCTTGTTACAG
ATCGTACATGGAAAATTATTGTGAAGAAGAAAGGGAAGCACTAGCATCGC
CCGATCCTGCTGCTCAAGCTCAGCTCAATCAGTGGACAGATTGGCAATGG
TAAATTCAGGATTCAGGACGAGCTAAAAAAGAGATTAATAACTGAAGATT
TTTTTACTTGGAATTTACCGAACTCCACAACCACAAACACGAGCACAAAA
GAAGAAGAAGAGGTGTTGCTGAAGTATATTGGTGGTGTTGATATGAGCTT
CTCAAAGGAAGATCCATCAATTGCATGTGGTTGCATTGTTGTGTTGGACC
TCCAAACTCTGCAAATAGTCTATGAGGATTATTCTCTTCTCAGGCTTCAA
GTGCCTTATGTCCCTGGTTTCCTTGCATTTCGCGAGGCTCCGGTTCTTTT
ATCGCTTCTGGATAACATGAAAAAGAGGGCTAACCATTTTTACCCACAGG
TATTAATGGTTGATGGCAATGGACTACTCCATCCTCGAGGTTTTGGCTTG
GCCAGTCACATCGGTGTTCTGGCGGATCTTACTACAATTGGGGTTGGAAA
GAATGTGAATATTGACTACACTGCCCCATGTGGATGGTCTAACACATTCT
GGGATAAGGCAACTACTTGATGCACAAGNAACAATAATGAAGATATTAAT
CCTTTGATGGGAGGCTCAGGATCCACATGGGGAAGGGGCAATGAGATCAA
CTCCAAACCATTTGAAGCCTAATTTTATTTCCGGTGGGCCCCTGCATTTC
CCCTGGATAGTGCTGCCATGGATGGTAAAAAGGACTGCCAGGAAT
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