EY684529

Overview
NameEY684529
Unique NameEY684529
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length837
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3542 contig Csv1_Contig3542:432..1268. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY684529 vs. ExPASy Swiss-Prot
Match: RAB8A_CANFA (Ras-related protein Rab-8A OS=Canis familiaris GN=RAB8A PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.994e-11
Identity = 38/84 (45.24%), Postives = 55/84 (65.48%), Query Frame = 3
Query:   24 LNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIK----QRLADTDSRSEPSTIKINQPDQ 263
            + K+++GNK D+++ KR V   +G+ LA +YGIKF ETSAK N+NVE  FF++ARDIK    ++L     +     +KI  PDQ
Sbjct:  114 VEKMILGNKCDVND-KRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKKLEGNSPQGSNQGVKIT-PDQ 195          
BLAST of EY684529 vs. ExPASy Swiss-Prot
Match: RAB8A_RAT (Ras-related protein Rab-8A OS=Rattus norvegicus GN=Rab8a PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 3.910e-11
Identity = 32/61 (52.46%), Postives = 47/61 (77.05%), Query Frame = 3
Query:   24 LNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRL 206
            + K+++GNK D+++ KR V   +G+ LA +YGIKF ETSAK N+NVE  FF++ARDIK ++
Sbjct:  114 VEKMILGNKCDVND-KRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKM 173          
BLAST of EY684529 vs. ExPASy Swiss-Prot
Match: RAB8A_PONAB (Ras-related protein Rab-8A OS=Pongo abelii GN=RAB8A PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.910e-11
Identity = 38/84 (45.24%), Postives = 55/84 (65.48%), Query Frame = 3
Query:   24 LNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIK----QRLADTDSRSEPSTIKINQPDQ 263
            + K+++GNK D+++ KR V   +G+ LA +YGIKF ETSAK N+NVE  FF++ARDIK    ++L     +     +KI  PDQ
Sbjct:  114 VEKMILGNKRDVND-KRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKKLEGNSPQGSNQGVKIT-PDQ 195          
BLAST of EY684529 vs. ExPASy Swiss-Prot
Match: RAB8A_MOUSE (Ras-related protein Rab-8A OS=Mus musculus GN=Rab8a PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 3.910e-11
Identity = 32/61 (52.46%), Postives = 47/61 (77.05%), Query Frame = 3
Query:   24 LNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRL 206
            + K+++GNK D+++ KR V   +G+ LA +YGIKF ETSAK N+NVE  FF++ARDIK ++
Sbjct:  114 VEKMILGNKCDVND-KRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKM 173          
BLAST of EY684529 vs. ExPASy Swiss-Prot
Match: YPTM2_MAIZE (GTP-binding protein YPTM2 OS=Zea mays GN=YPTM2 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.107e-11
Identity = 41/98 (41.84%), Postives = 59/98 (60.20%), Query Frame = 3
Query:   21 SLNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLAD--TDSRSEPSTIKI-NQPDQAGGVGQAAQKSACC 305
            ++NK+LVGNK+D+  +K  V T   +A ADE GI F ETSAK   NV+Q F ++A  IK R+A     + + P+T++I  QP          QK++CC
Sbjct:  113 NVNKLLVGNKSDLTANK-VVATETAKAFADEMGIPFMETSAKNATNVQQAFMAMAASIKDRMASQPAAANARPATVQIRGQP--------VNQKTSCC 201          
BLAST of EY684529 vs. ExPASy Swiss-Prot
Match: YPTC1_CHLRE (GTP-binding protein YPTC1 OS=Chlamydomonas reinhardtii GN=YPTC1 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.107e-11
Identity = 43/102 (42.16%), Postives = 60/102 (58.82%), Query Frame = 3
Query:    6 RPPTRSLNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADTDSRSEPSTIKINQPDQAGGVGQA--AQKSACC 305
            R  + ++NK+LVGNK+D+  SK+ V  S  +A ADE GI F ETSAK   NVEQ F ++A +IK R+A     S+P   K   P      G+   ++ S+CC
Sbjct:  108 RYASENVNKLLVGNKSDLT-SKKVVEYSVAKAFADEIGIPFLETSAKNATNVEQAFMTMAAEIKNRMA-----SQPIPTKAGGPVVRPQEGKPINSKSSSCC 203          
BLAST of EY684529 vs. ExPASy Swiss-Prot
Match: RAB10_RAT (Ras-related protein Rab-10 OS=Rattus norvegicus GN=Rab10 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.107e-11
Identity = 37/94 (39.36%), Postives = 54/94 (57.45%), Query Frame = 3
Query:   24 LNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADTDSRSEPSTIKINQPDQAGGVGQAAQKSACC 305
            + ++L+ NK DMD  KR VP  KG+ +A E+ I+FFETSAK N+N+E+ F ++  DI ++    +  SE         D + G G    KS CC
Sbjct:  115 VERMLLRNKCDMDH-KRVVPKGKGEQIAREHRIRFFETSAKANINIEKAFLTLPEDILRKTPVKEPNSE-------NVDISSGGGVTGWKSKCC 200          
BLAST of EY684529 vs. ExPASy Swiss-Prot
Match: RAB8B_RAT (Ras-related protein Rab-8B OS=Rattus norvegicus GN=Rab8b PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.670e-11
Identity = 34/81 (41.98%), Postives = 56/81 (69.14%), Query Frame = 3
Query:   24 LNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDI----KQRLADTDSRSEPSTIKINQ 254
            + ++++GNK DM++ KR V   +G+ LA +YGIKF ETSAK++ NVE+ FF++ARDI     +++ D++S      +KI +
Sbjct:  114 VERMILGNKCDMND-KRQVSKERGEKLAIDYGIKFLETSAKSSTNVEEAFFTLARDIMTKLNRKMNDSNSSGAGGPVKITE 193          
BLAST of EY684529 vs. ExPASy Swiss-Prot
Match: RAB8B_PONAB (Ras-related protein Rab-8B OS=Pongo abelii GN=RAB8B PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.670e-11
Identity = 34/81 (41.98%), Postives = 56/81 (69.14%), Query Frame = 3
Query:   24 LNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDI----KQRLADTDSRSEPSTIKINQ 254
            + ++++GNK DM++ KR V   +G+ LA +YGIKF ETSAK++ NVE+ FF++ARDI     +++ D++S      +KI +
Sbjct:  114 VERMILGNKCDMND-KRQVSKERGEKLAIDYGIKFLETSAKSSTNVEEAFFTLARDIMTKLNRKMNDSNSAGAGGPVKITE 193          
BLAST of EY684529 vs. ExPASy Swiss-Prot
Match: RAB8B_MOUSE (Ras-related protein Rab-8B OS=Mus musculus GN=Rab8b PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.670e-11
Identity = 34/81 (41.98%), Postives = 56/81 (69.14%), Query Frame = 3
Query:   24 LNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDI----KQRLADTDSRSEPSTIKINQ 254
            + ++++GNK DM++ KR V   +G+ LA +YGIKF ETSAK++ NVE+ FF++ARDI     +++ D++S      +KI +
Sbjct:  114 VERMILGNKCDMND-KRQVSKERGEKLAIDYGIKFLETSAKSSTNVEEAFFTLARDIMTKLNRKMNDSNSSGAGGPVKITE 193          
The following BLAST results are available for this feature:
BLAST of EY684529 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
RAB8A_CANFA2.994e-1145.24Ras-related protein Rab-8A OS=Canis familiaris GN=... [more]
RAB8A_RAT3.910e-1152.46Ras-related protein Rab-8A OS=Rattus norvegicus GN... [more]
RAB8A_PONAB3.910e-1145.24Ras-related protein Rab-8A OS=Pongo abelii GN=RAB8... [more]
RAB8A_MOUSE3.910e-1152.46Ras-related protein Rab-8A OS=Mus musculus GN=Rab8... [more]
YPTM2_MAIZE5.107e-1141.84GTP-binding protein YPTM2 OS=Zea mays GN=YPTM2 PE=... [more]
YPTC1_CHLRE5.107e-1142.16GTP-binding protein YPTC1 OS=Chlamydomonas reinhar... [more]
RAB10_RAT5.107e-1139.36Ras-related protein Rab-10 OS=Rattus norvegicus GN... [more]
RAB8B_RAT6.670e-1141.98Ras-related protein Rab-8B OS=Rattus norvegicus GN... [more]
RAB8B_PONAB6.670e-1141.98Ras-related protein Rab-8B OS=Pongo abelii GN=RAB8... [more]
RAB8B_MOUSE6.670e-1141.98Ras-related protein Rab-8B OS=Mus musculus GN=Rab8... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C2-003-001-B06-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684529 ID=EY684529; Name=EY684529; organism=Citrus sinensis; type=EST; length=837bp
CCACGCGTCCGCCCACGCGTTCGCTCAACAAGGTTTTGGTAGGAAACAAA
GCTGACATGGACGAAAGCAAAAGGGCTGTGCCTACCTCAAAGGGTCAAGC
ACTTGCTGATGAGTATGGTATAAAATTTTTTGAAACCAGTGCAAAGACAA
ATCTAAATGTGGAGCAAGTTTTCTTTTCAATAGCAAGGGATATTAAACAA
AGGCTTGCTGATACTGACTCAAGATCTGAGCCCTCAACAATCAAGATTAA
TCAACCAGACCAGGCCGGGGGGGTTGGTCAAGCCGCCCAAAAATCGGCTT
GCTGTGGTGGTACTTAATAACCCATAACTTCTGAGGCACGTCCAGGTGTA
ACTCTTGGAAAGGGAAAAGGAAAAAAGAAAAAAAAAAAAAAAGAAACAAA
GAAAAGAAAAAACTAATTGTGATGACTGTGATGGATGCTTGTAATTTTTC
TTGTCATTCTTTTGAATCTTGTTTTAGCGTGTGAAATGTAGTTTTTAATT
ATTGAGAATTTCCATTGTGGCAAACAGCTCCTTCTATCTTGTGACTGACA
TATTTTTCCTTTTTTACCCATTTTCTTTTTCTGAAANNNNNNNCANNNCC
NGNNNNCNNNGCNGNNNGAGNAGAGAGAAGACGCCGGGGGAGGAATTTTG
GCAAAGAGACAAAACGCGGGGCAAGCAAGAGAGAGAAGTAAGAACGAAGA
AGGAAGCGGGGGTAGTGATAGAAAGGAAGCGAGACTTTATGAGGGGGCCC
TAAAAAAGAACAAACTTAAGACGCGGGGGTGAAAACAAAAGCCTTCTAAA
AGGCGCCAAAATAATATCGGCGGCGCCCTAATCACCA
back to top