EY684498

Overview
NameEY684498
Unique NameEY684498
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length994
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684498 vs. ExPASy Swiss-Prot
Match: XTH11_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 11 OS=Arabidopsis thaliana GN=XTH11 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 4.263e-23
Identity = 54/129 (41.86%), Postives = 74/129 (57.36%), Query Frame = 1
Query:  166 TFLEDFKVTWSDAHLRQIEGGRAIQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNTENVRDELDFEFLGNRTGQPYTVQTNIYANGKGDKEQRVNLWFDPAADYHLYPILWKPS 552
            T+  ++  TW    L  I     +QL LD+NSG GF S+  Y  G  +++IK     S G +T+FY+ S +    DEL F+ LG + G PY + TN+Y  G+G K+QR  LWFDP  DYH Y  LW P+
Sbjct:   23 TWGNNYYQTWGHQAL-VINKTSELQLTLDKNSGSGFESQLIYGSGYFNVRIKAPQTTSTGVITSFYLISRSSR-HDELCFQILG-KNGPPYLLNTNMYLYGEGGKDQRFRLWFDPTKDYHSYSFLWNPN 148          

HSP 2 Score: 27.7202 bits (60), Expect = 4.263e-23
Identity = 11/20 (55.00%), Postives = 14/20 (70.00%), Query Frame = 2
Query:  545 NLHHIVFYVDDVPIRGYKNS 604
            N + +VFYVDD PIR Y  +
Sbjct:  146 NPNQLVFYVDDTPIRVYSKN 165          
BLAST of EY684498 vs. ExPASy Swiss-Prot
Match: XTH33_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 33 OS=Arabidopsis thaliana GN=XTH33 PE=2 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 7.194e-23
Identity = 49/119 (41.18%), Postives = 71/119 (59.66%), Query Frame = 1
Query:  202 AHLRQIEGGRAIQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNTENV---RDELDFEFLGNRTGQPYTVQTNIYANG--KGDKEQRVNLWFDPAADYHLYPILW 543
            AH  Q+ G  A +L LD++SG G  SK +Y +G  S ++KL  G ++G V AFY+ SN E      DE+D E LG      +T+QTN+YANG  +  +E++   WFDP   +H Y ++W
Sbjct:   53 AHNIQVNGSLA-KLTLDKSSGAGLVSKNKYHYGFFSARLKLPAGFASGVVVAFYL-SNAETYPKSHDEIDIELLGRSRRDDWTIQTNVYANGSTRTGREEKFYFWFDPTQAFHDYTLIW 169          

HSP 2 Score: 35.039 bits (79), Expect = 7.194e-23
Identity = 19/50 (38.00%), Postives = 27/50 (54.00%), Query Frame = 2
Query:  545 NLHHIVFYVDDVPIRGYKNSWKGSFSHEPPHG--GVYFNPWGKPKEWGTK 688
            N HH VF VD++P+R + N  +G+F+   P     +Y   W    EW TK
Sbjct:  170 NSHHTVFLVDNIPVRQFPN--RGAFTSAYPSKPMSLYVTVW-DGSEWATK 216          
The following BLAST results are available for this feature:
BLAST of EY684498 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
XTH11_ARATH4.263e-2341.86Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH33_ARATH7.194e-2341.18Probable xyloglucan endotransglucosylase/hydrolase... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-055-G05-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684498 ID=EY684498; Name=EY684498; organism=Citrus sinensis; type=EST; length=994bp
TACATAACCACAACATATAATTAAAGTTCTCTTTCTAATTAGTAACAGAT
AATATTTTATTGTACGGCTTGTTTTACAGCTATGGCTATCCTAAGAAATG
CAATAGCATTATTTGTGTTGCTTTACTGTCTTGTATCCTGCTCTTGCGTT
TTAGGGCGACCGGCTACTTTTCTTGAGGATTTTAAAGTCACATGGTCCGA
TGCCCATCTCAGGCAAATCGAGGGAGGGAGGGCCATCCAGCTAGTTCTAG
ACCAAAATTCAGGATGTGGGTTTGCTTCCAAAAGGCAGTACTTGTTCGGG
CGTGTAAGCATGAAGATCAAGCTCGTTCCTGGAGACTCTGCTGGAACTGT
CACTGCATTTTATATGAATTCCAACACCGAAAATGTGAGAGACGAGCTTG
ATTTTGAGTTCCTGGGAAACCGAACGGGTCAGCCTTACACGGTCCAGACC
AATATCTATGCAAATGGAAAAGGCGATAAAGAACAGAGAGTGAACCTCTG
GTTTGACCCTGCTGCAGATTATCACCTTTACCCTATTCTCTGGAAACCTT
CACCATATTGTCTTCTATGTGGATGATGTGCCCATCCGGGGTTACAAAAA
CAGTTGGAAAGGCTCCTTTTCCCATGAACCACCCCATGGGGGGGTGTATT
TCAACCCTTGGGGGAAACCAAAAGAATGGGGCACAAAAAGGGTGGTCCAA
AAAAAAAAAAAATTGGGAGCCAAGCCTCCCTTTTTTTTTGCTTATTTCAA
AAAATTTTTAATTTTTGGGGGGTGGCCCCTTTCCCGGGACACACCAAACT
GGGCCTCCCAACCCCCGGAAAACGGGGGGGGGGAGGAAAAAAATTTTTTC
ACCCCCCCCCCCCGCCCTGGGAAAACACAAAAAAAAAAAAAACAAAGGGG
GGTTCCTTTCCCCCCCCCCCCCGAGGATTTTTGAAATTTTTATTGCGCGC
GGGGAGAAAAAACACCCAAAAAAAACCCCCCCCGCACCCCCCCC
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