EY684494

Overview
NameEY684494
Unique NameEY684494
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length921
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684494 vs. ExPASy Swiss-Prot
Match: 4CL4_ORYSJ (Probable 4-coumarate--CoA ligase 4 OS=Oryza sativa subsp. japonica GN=4CL4 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.275e-24
Identity = 50/104 (48.08%), Postives = 68/104 (65.38%), Query Frame = 3
Query:  120 ISSAAPPAPSNEKIATHIFKSKLPDIPISNHLPLHTYCFQD--RLSDDPCLIVGSTGKTYSYAETHLICRKTAAGLSNLGIKKGDVIMILLQNCAEFVFSFMGS 425
            + S A  A + ++  T +F+SKLPDI I +HL L  YCF+    ++  PCLI G TG  YSY E   + R+ AAGL  LG+ KGDV+M LL+NC EF F+F+G+
Sbjct:    1 MGSMAAAAEAAQEEETVVFRSKLPDIEIPSHLTLQAYCFEKLPEVAARPCLIDGQTGAVYSYGEVEELSRRAAAGLRRLGVGKGDVVMSLLRNCPEFAFTFLGA 104          

HSP 2 Score: 32.3426 bits (72), Expect = 2.275e-24
Identity = 14/20 (70.00%), Postives = 16/20 (80.00%), Query Frame = 2
Query:  434 IGAVTTTANPFYTSAEILKQ 493
            +GA TTTANPFYT  EI +Q
Sbjct:  107 LGAATTTANPFYTPHEIHRQ 126          
BLAST of EY684494 vs. ExPASy Swiss-Prot
Match: 4CL2_TOBAC (4-coumarate--CoA ligase 2 OS=Nicotiana tabacum GN=4CL2 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 4.122e-23
Identity = 49/87 (56.32%), Postives = 61/87 (70.11%), Query Frame = 3
Query:  171 IFKSKLPDIPISNHLPLHTYCFQD--RLSDDPCLIVGSTGKTYSYAETHLICRKTAAGLSNLGIKKGDVIMILLQNCAEFVFSFMGS 425
            IF+SKLPDI I NHLPLH+YCF++    S  PCLI G+  + Y+YA+  L  RK AAGL   GI+  D IMILL N  EFVF+F+G+
Sbjct:   11 IFRSKLPDIYIPNHLPLHSYCFENISEFSSRPCLINGANKQIYTYADVELNSRKVAAGLHKQGIQPKDTIMILLPNSPEFVFAFIGA 97          

HSP 2 Score: 32.7278 bits (73), Expect = 4.122e-23
Identity = 13/24 (54.17%), Postives = 19/24 (79.17%), Query Frame = 2
Query:  428 SMIGAVTTTANPFYTSAEILKQFK 499
            S +GA++T ANP +T AE++KQ K
Sbjct:   98 SYLGAISTMANPLFTPAEVVKQAK 121          
BLAST of EY684494 vs. ExPASy Swiss-Prot
Match: 4CL1_ARATH (4-coumarate--CoA ligase 1 OS=Arabidopsis thaliana GN=4CL1 PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 9.074e-23
Identity = 47/95 (49.47%), Postives = 62/95 (65.26%), Query Frame = 3
Query:  147 SNEKIATHIFKSKLPDIPISNHLPLHTYCFQD--RLSDDPCLIVGSTGKTYSYAETHLICRKTAAGLSNLGIKKGDVIMILLQNCAEFVFSFMGS 425
            SN   +  IF+SKLPDI I NHL LH Y FQ+    +  PCLI G TG  Y+Y++ H+I R+ AA    LG+ + DV+M+LL NC EFV SF+ +
Sbjct:   16 SNNNNSDVIFRSKLPDIYIPNHLSLHDYIFQNISEFATKPCLINGPTGHVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAA 110          

HSP 2 Score: 31.9574 bits (71), Expect = 9.074e-23
Identity = 15/24 (62.50%), Postives = 16/24 (66.67%), Query Frame = 2
Query:  428 SMIGAVTTTANPFYTSAEILKQFK 499
            S  GA  T ANPF+T AEI KQ K
Sbjct:  111 SFRGATATAANPFFTPAEIAKQAK 134          
BLAST of EY684494 vs. ExPASy Swiss-Prot
Match: 4CL3_ORYSJ (Probable 4-coumarate--CoA ligase 3 OS=Oryza sativa subsp. japonica GN=4CL3 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.999e-22
Identity = 45/87 (51.72%), Postives = 59/87 (67.82%), Query Frame = 3
Query:  171 IFKSKLPDIPISNHLPLHTYCF--QDRLSDDPCLIVGSTGKTYSYAETHLICRKTAAGLSNLGIKKGDVIMILLQNCAEFVFSFMGS 425
            +F+SKLPDI I N + L  YCF     +   PCLI G TG++Y+YAE     R+ AAGL  +G+ KGDV+M LL+NC EF FSF+G+
Sbjct:   11 VFRSKLPDIEIDNSMTLQEYCFARMAEVGARPCLIDGQTGESYTYAEVESASRRAAAGLRRMGVGKGDVVMSLLRNCPEFAFSFLGA 97          

HSP 2 Score: 31.9574 bits (71), Expect = 1.999e-22
Identity = 13/20 (65.00%), Postives = 16/20 (80.00%), Query Frame = 2
Query:  434 IGAVTTTANPFYTSAEILKQ 493
            +GA TTTANPFYT  E+ +Q
Sbjct:  100 LGAATTTANPFYTPHEVHRQ 119          
BLAST of EY684494 vs. ExPASy Swiss-Prot
Match: 4CL_VANPL (4-coumarate--CoA ligase OS=Vanilla planifolia GN=4CL PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 5.661e-22
Identity = 72/186 (38.71%), Postives = 103/186 (55.38%), Query Frame = 3
Query:  171 IFKSKLPDIPISNHLPLHTYCFQD--RLSDDPCLIVGSTGKTYSYAETHLICRKTAAGLSNLGIKKGDVIMILLQNCAEFVFSFMG-SFP*SVQSRRRP-IPSTLQLKS*NSSK-----TSGGQID*SHWSP*VKGVAKRRNKNFHNGFR--------SMPPRKNLPHFPGLSGKPNEDQSPKIGI 677
            IF+SKLPDI I  +LPLH+YCF++  + S  PCLI G+T + ++YA+  LI R+  +GLS LGIK+GD IMILL N  EFVF+F+G SF  S+ +   P   ST  +K   +S      T G  +D            K ++    NG +        +     N+ HF  L+G  +E++ PK+ I
Sbjct:   15 IFRSKLPDIYIPKNLPLHSYCFENISKFSSRPCLINGATDEIFTYADVELISRRVGSGLSKLGIKQGDTIMILLPNSPEFVFAFLGASFIGSISTMANPFFTSTEVIKQAKASNAKLIITQGCYVD------------KVKDYACENGVKIISIDTTTTADDAANILHFSELTG-ADENEMPKVEI 187          
BLAST of EY684494 vs. ExPASy Swiss-Prot
Match: 4CL4_ARATH (4-coumarate--CoA ligase 4 OS=Arabidopsis thaliana GN=4CL4 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 3.846e-20
Identity = 44/89 (49.44%), Postives = 56/89 (62.92%), Query Frame = 3
Query:  171 IFKSKLPDIPISNHLPLHTYCFQ------DRLSDDPCLIVGSTGKTYSYAETHLICRKTAAGLSNLGIKKGDVIMILLQNCAEFVFSFM 419
            IF+SKLPDI I NHLPL  Y FQ      D  S   C+I G+TG+  +YA+     R+ AAG+  LGI+ GDV+M+LL N  EF  SF+
Sbjct:   28 IFRSKLPDIFIPNHLPLTDYVFQRFSGDGDGDSSTTCIIDGATGRILTYADVQTNMRRIAAGIHRLGIRHGDVVMLLLPNSPEFALSFL 116          

HSP 2 Score: 36.5798 bits (83), Expect = 3.846e-20
Identity = 16/25 (64.00%), Postives = 20/25 (80.00%), Query Frame = 2
Query:  425 LSMIGAVTTTANPFYTSAEILKQFK 499
            ++ +GAV+TTANPFYT  EI KQ K
Sbjct:  118 VAYLGAVSTTANPFYTQPEIAKQAK 142          
BLAST of EY684494 vs. ExPASy Swiss-Prot
Match: 4CL5_ORYSJ (Probable 4-coumarate--CoA ligase 5 OS=Oryza sativa subsp. japonica GN=4CL5 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.151e-19
Identity = 41/88 (46.59%), Postives = 60/88 (68.18%), Query Frame = 3
Query:  171 IFKSKLPDIPISNHLPLHTYCFQDRLSDD---PCLIVGSTGKTYSYAETHLICRKTAAGLSNLGIKKGDVIMILLQNCAEFVFSFMGS 425
            +F+S+LPDI I +HLPLH Y F+ RL+D     CLI G+TG+T S+ +   + R+ AAGLS++G+  G  +M+LL N  EF  +F+ S
Sbjct:    9 VFRSRLPDIAIPDHLPLHDYVFE-RLADRRDRACLIDGATGETLSFGDVDALSRRVAAGLSSIGVCHGSTVMLLLPNSVEFAVAFLAS 95          

HSP 2 Score: 33.113 bits (74), Expect = 3.151e-19
Identity = 15/22 (68.18%), Postives = 17/22 (77.27%), Query Frame = 2
Query:  428 SMIGAVTTTANPFYTSAEILKQ 493
            S +GAVTTTANP +T  EI KQ
Sbjct:   96 SRLGAVTTTANPLHTPPEIAKQ 117          
BLAST of EY684494 vs. ExPASy Swiss-Prot
Match: 4CL1_ORYSJ (Probable 4-coumarate--CoA ligase 1 OS=Oryza sativa subsp. japonica GN=4CL1 PE=2 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 7.798e-17
Identity = 46/109 (42.20%), Postives = 66/109 (60.55%), Query Frame = 3
Query:  111 SLDISSAAPPAPSNEKIATHIFKSKLPDIPISNHLPLHTYCFQ--DRLSDDPCLIVGSTGKTYSYAETHLICRKTAAGL--SNLGIKKGDVIMILLQNCAEFVFSFMGS 425
            S++       AP+ E     IF+SKL DI I+N LPLH YCF+    ++  PCLI G+TG   +YA+   + R+ AA L  + LG+++G V+M LL+N  EFV SF  +
Sbjct:    3 SMEQQQPESAAPATEASPEIIFRSKLQDIAITNTLPLHRYCFERLPEVAARPCLIDGATGGVLTYADVDRLSRRLAAALRRAPLGLRRGGVVMSLLRNSPEFVLSFFAA 111          

HSP 2 Score: 25.409 bits (54), Expect = 7.798e-17
Identity = 12/22 (54.55%), Postives = 13/22 (59.09%), Query Frame = 2
Query:  428 SMIGAVTTTANPFYTSAEILKQ 493
            S +GA  TTANP  T  EI  Q
Sbjct:  112 SRVGAAVTTANPMSTPHEIESQ 133          
The following BLAST results are available for this feature:
BLAST of EY684494 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
4CL4_ORYSJ2.275e-2448.08Probable 4-coumarate--CoA ligase 4 OS=Oryza sativa... [more]
4CL2_TOBAC4.122e-2356.324-coumarate--CoA ligase 2 OS=Nicotiana tabacum GN=... [more]
4CL1_ARATH9.074e-2349.474-coumarate--CoA ligase 1 OS=Arabidopsis thaliana ... [more]
4CL3_ORYSJ1.999e-2251.72Probable 4-coumarate--CoA ligase 3 OS=Oryza sativa... [more]
4CL_VANPL5.661e-2238.714-coumarate--CoA ligase OS=Vanilla planifolia GN=4... [more]
4CL4_ARATH3.846e-2049.444-coumarate--CoA ligase 4 OS=Arabidopsis thaliana ... [more]
4CL5_ORYSJ3.151e-1946.59Probable 4-coumarate--CoA ligase 5 OS=Oryza sativa... [more]
4CL1_ORYSJ7.798e-1742.20Probable 4-coumarate--CoA ligase 1 OS=Oryza sativa... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-055-F11-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684494 ID=EY684494; Name=EY684494; organism=Citrus sinensis; type=EST; length=921bp
CTTAATTTTCCCTAAACAATAGCCAGCTCCTCCTACTCATCTAAAAAAAT
TTCGACAAAACAAAAAAGGAACTGACGATGATATCAATAGCCACTAAAAA
ACCAGAGCTGTCTCTTGATATCTCTTCAGCAGCACCACCAGCGCCGTCCA
ATGAAAAGATAGCCACCCATATTTTCAAATCAAAGCTTCCCGATATACCC
ATCTCCAATCATCTCCCTCTCCATACATATTGTTTCCAGGATCGTTTATC
TGACGATCCATGCTTAATCGTTGGCTCAACTGGCAAAACTTACTCTTATG
CCGAAACGCACCTCATCTGTCGAAAAACCGCAGCCGGTTTGTCGAATCTC
GGCATCAAAAAGGGCGACGTGATCATGATCCTCCTCCAGAACTGCGCCGA
ATTCGTCTTCTCGTTCATGGGAAGCTTTCCATGATCGGTGCAGTCACGAC
GACGGCCAATCCCTTCTACACTTCAGCTGAAATCTTGAAACAGTTCAAAA
ACCTCTGGGGGCCAAATTGATTAATCACATTGGTCCCCGTAAGTCAAAGG
GGTTGCCAAAAGACGGAACAAGAATTTCCACAATGGATTCCGATCGATGC
CCCCCCGGAAAAATTTGCCGCATTTCCCAGGGTTATCCGGGAAGCCAAAT
GAGGATCAATCCCCAAAAATTGGCATCCAGGCCCGGAAAGAAACCGGGGG
GGTTGCCCTTCTTTTCGGGGACAAAGGGATTGGCCTAAAGGGGGGGGGGG
GTGAAACCCAGAAAACTTTGTTACCACAAGGGGGGCCGAAAAGGGAATGG
GAAAAAAACCAAAAAATCTTTTTTGTGAGGAGCGGGAGAGTATGGGGGGG
GGGCGTTTTTCATTTTGTTTTACCAAATTTATTTTTATTTAAAACAAGGA
GGGTTTTTGGAGGTCTCTCTC
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