EY684459

Overview
NameEY684459
Unique NameEY684459
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1026
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY684459 vs. ExPASy Swiss-Prot
Match: RL13_DANRE (60S ribosomal protein L13 OS=Danio rerio GN=rpl13 PE=2 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 2.964e-21
Identity = 32/68 (47.06%), Postives = 44/68 (64.71%), Query Frame = 3 
Query:   57 NNVVPHGHFNNHWQNYVKTWFNQPALKYRRLFSRHNNAVKIFPRPTAGPLRPVDPGLTLKYNMILSAG 260
            N ++ + HF+  WQ  V+TWFNQPA K RR  +R   A +I PRP +GPLRPV    T++Y+  + AG
Sbjct:    6 NGMILNPHFHKDWQKRVRTWFNQPARKIRRRKARQAKARRIAPRPVSGPLRPVVRCPTIRYHTKVRAG 73

HSP 2 Score: 55.4546 bits (132), Expect = 2.964e-21
Identity = 31/64 (48.44%), Postives = 42/64 (65.62%), Query Frame = 1 
Query:  268 FTLEEL*AAGIPTKLAPTIGVSLDHRRTIRSLDGVHSPVPTLKTWEA*LVVFPKTSYASSKAGD 459
            FTLEEL AAGI  K+A TIG+S+D RR  RS + + + V  LK +   L++FP+ + A  K GD
Sbjct:   76 FTLEELKAAGINKKVARTIGISVDSRRRNRSTESLQANVQRLKEYRTKLIIFPRKA-AKPKKGD 138
[Close]
BLAST of EY684459 vs. ExPASy Swiss-Prot
Match: RL13_DROME (60S ribosomal protein L13 OS=Drosophila melanogaster GN=RpL13 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 8.482e-21
Identity = 35/70 (50.00%), Postives = 47/70 (67.14%), Query Frame = 3 
Query:   51 KHNNVVPHGHFNNHWQNYVKTWFNQPALKYRRLFSRHNNAVKIFPRPTAGPLRPVDPGLTLKYNMILSAG 260
            K NN++P+ H++  WQ +VKTWFNQPA K RR  +R   A  +FPRP +G LRPV    T++Y+  L AG
Sbjct:    3 KGNNMIPNQHYHKWWQRHVKTWFNQPARKVRRHANRVKKAKAVFPRPASGALRPVVRCPTIRYHTKLRAG 72

HSP 2 Score: 45.8246 bits (107), Expect = 8.482e-21
Identity = 23/53 (43.40%), Postives = 33/53 (62.26%), Query Frame = 1 
Query:  268 FTLEEL*AAGIPTKLAPTIGVSLDHRRTIRSLDGVHSPVPTLKTWEA*LVVFP 426
            FTLEEL  AGI    A TIG+++D RR  +SL+     +  LK + + L++FP
Sbjct:   75 FTLEELKGAGIGANFAKTIGIAVDRRRKNKSLESRQRNIQRLKEYRSKLILFP 127
[Close]
BLAST of EY684459 vs. ExPASy Swiss-Prot
Match: RL13_DICDI (60S ribosomal protein L13 OS=Dictyostelium discoideum GN=rpl13 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.494e-21
Identity = 37/69 (53.62%), Postives = 46/69 (66.67%), Query Frame = 3 
Query:   54 HNNVVPHGHFNNHWQNYVKTWFNQPALKYRRLFSRHNNAVKIFPRPTAGPLRPVDPGLTLKYNMILSAG 260
            HN V+ + HF  HWQ  V+TWFNQPA K RR  +R   A K+FPRP A  L+PV  G T++YNM + AG
Sbjct:    4 HNKVLSNDHFRKHWQMRVRTWFNQPARKIRRRNNRIEKAAKVFPRPIA-TLKPVVRGSTIRYNMKVRAG 71

HSP 2 Score: 44.669 bits (104), Expect = 8.494e-21
Identity = 24/61 (39.34%), Postives = 37/61 (60.66%), Query Frame = 1 
Query:  268 FTLEEL*AAGIPTKLAPTIGVSLDHRRTIRSLDGVHSPVPTLKTWEA*LVVFPKTSYASSK 450
            FTLEEL AAG+  + A TIG+++D RR  ++   +      LK +++ LV+FP+   A  K
Sbjct:   74 FTLEELKAAGLTAQYARTIGIAVDTRRVNKTQQSLTLNTQRLKNYQSKLVLFPRKVNAPKK 134
[Close]
BLAST of EY684459 vs. ExPASy Swiss-Prot
Match: RL13_SCHPO (60S ribosomal protein L13 OS=Schizosaccharomyces pombe GN=rpl13 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.437e-20
Identity = 32/65 (49.23%), Postives = 40/65 (61.54%), Query Frame = 3 
Query:   66 VPHGHFNNHWQNYVKTWFNQPALKYRRLFSRHNNAVKIFPRPTAGPLRPVDPGLTLKYNMILSAG 260
            +P+ HF+  WQ YVKTWFNQP  K RR  +R   A KI PRP    +RP     T++YNM + AG
Sbjct:    9 LPNAHFHKDWQRYVKTWFNQPGRKLRRRQARQTKAAKIAPRPVEA-IRPAVKPPTIRYNMKVRAG 72

HSP 2 Score: 53.5286 bits (127), Expect = 1.437e-20
Identity = 29/64 (45.31%), Postives = 41/64 (64.06%), Query Frame = 1 
Query:  268 FTLEEL*AAGIPTKLAPTIGVSLDHRRTIRSLDGVHSPVPTLKTWEA*LVVFPKTSYASSKAGD 459
            FTLEEL AAG+  ++A TIG+ +DHRR  RS + +   V  +K + A L+VFP+ +    K GD
Sbjct:   75 FTLEELKAAGVSRRVASTIGIPVDHRRRNRSEESLQRNVERIKVYLAHLIVFPRKA-GQPKKGD 137
[Close]
BLAST of EY684459 vs. ExPASy Swiss-Prot
Match: RL13_CHICK (60S ribosomal protein L13 OS=Gallus gallus GN=RPL13 PE=2 SV=2)

HSP 1 Score: 65.855 bits (159), Expect = 9.638e-19
Identity = 31/68 (45.59%), Postives = 42/68 (61.76%), Query Frame = 3 
Query:   57 NNVVPHGHFNNHWQNYVKTWFNQPALKYRRLFSRHNNAVKIFPRPTAGPLRPVDPGLTLKYNMILSAG 260
            N ++   HF+  WQ  V TWFNQPA K RR  +R   A +I PRP AGP+RP+    T++Y+  + AG
Sbjct:    6 NGMILKPHFHKDWQRRVATWFNQPARKIRRRKARQAKARRIAPRPVAGPIRPIVRCPTVRYHKKVRAG 73

HSP 2 Score: 49.2914 bits (116), Expect = 9.638e-19
Identity = 28/68 (41.18%), Postives = 42/68 (61.76%), Query Frame = 1 
Query:  268 FTLEEL*AAGIPTKLAPTIGVSLDHRRTIRSLDGVHSPVPTLKTWEA*LVVFPKTSYASSKAGDFLPQ 471
            F+LEEL  AGI  + A TIG+S+D RR  +S + + + V  LK + + L++FP+   A  K GD  P+
Sbjct:   76 FSLEELKLAGINKRFARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKK-GDSSPE 142
[Close]
BLAST of EY684459 vs. ExPASy Swiss-Prot
Match: RL13_HUMAN (60S ribosomal protein L13 OS=Homo sapiens GN=RPL13 PE=1 SV=4)

HSP 1 Score: 65.0846 bits (157), Expect = 9.638e-19
Identity = 31/68 (45.59%), Postives = 42/68 (61.76%), Query Frame = 3 
Query:   57 NNVVPHGHFNNHWQNYVKTWFNQPALKYRRLFSRHNNAVKIFPRPTAGPLRPVDPGLTLKYNMILSAG 260
            N +V   HF+  WQ  V TWFNQPA K RR  +R   A +I PRP +GP+RP+    T++Y+  + AG
Sbjct:    6 NGMVLKPHFHKDWQRRVATWFNQPARKIRRRKARQAKARRIAPRPASGPIRPIVRCPTVRYHTKVRAG 73

HSP 2 Score: 50.0618 bits (118), Expect = 9.638e-19
Identity = 34/95 (35.79%), Postives = 50/95 (52.63%), Query Frame = 1 
Query:  268 FTLEEL*AAGIPTKLAPTIGVSLDHRRTIRSLDGVHSPVPTLKTWEA*LVVFPKTSYASSK--------------AGDFLPQRNWVQRHELSRTI 510
            F+LEEL  AGI  K+A TIG+S+D RR  +S + + + V  LK + + L++FP+   A  K               G  +P RN V + E +R I
Sbjct:   76 FSLEELRVAGIHKKVARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSAEELKLATQLTGPVMPVRN-VYKKEKARVI 169
[Close]
BLAST of EY684459 vs. ExPASy Swiss-Prot
Match: RL13_RAT (60S ribosomal protein L13 OS=Rattus norvegicus GN=Rpl13 PE=1 SV=2)

HSP 1 Score: 64.6994 bits (156), Expect = 1.253e-18
Identity = 30/68 (44.12%), Postives = 42/68 (61.76%), Query Frame = 3 
Query:   57 NNVVPHGHFNNHWQNYVKTWFNQPALKYRRLFSRHNNAVKIFPRPTAGPLRPVDPGLTLKYNMILSAG 260
            N ++   HF+  WQ  V TWFNQPA K RR  +R   A +I PRP +GP+RP+    T++Y+  + AG
Sbjct:    6 NGMILKPHFHKDWQQRVDTWFNQPARKIRRRKARQAKARRIAPRPASGPIRPIVRCPTVRYHTKVRAG 73

HSP 2 Score: 50.0618 bits (118), Expect = 1.253e-18
Identity = 34/95 (35.79%), Postives = 50/95 (52.63%), Query Frame = 1 
Query:  268 FTLEEL*AAGIPTKLAPTIGVSLDHRRTIRSLDGVHSPVPTLKTWEA*LVVFPKTSYASSK--------------AGDFLPQRNWVQRHELSRTI 510
            F+LEEL  AGI  K+A TIG+S+D RR  +S + + + V  LK + + L++FP+   A  K               G  +P RN V + E +R I
Sbjct:   76 FSLEELRVAGIHKKMARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSAEELKLATQLTGPVMPIRN-VYKKEKARAI 169
[Close]
BLAST of EY684459 vs. ExPASy Swiss-Prot
Match: RL13_MOUSE (60S ribosomal protein L13 OS=Mus musculus GN=Rpl13 PE=2 SV=3)

HSP 1 Score: 64.6994 bits (156), Expect = 1.630e-18
Identity = 30/68 (44.12%), Postives = 42/68 (61.76%), Query Frame = 3 
Query:   57 NNVVPHGHFNNHWQNYVKTWFNQPALKYRRLFSRHNNAVKIFPRPTAGPLRPVDPGLTLKYNMILSAG 260
            N ++   HF+  WQ  V TWFNQPA K RR  +R   A +I PRP +GP+RP+    T++Y+  + AG
Sbjct:    6 NGMILKPHFHKDWQQRVDTWFNQPARKIRRRKARQAKARRIAPRPASGPIRPIVRCPTVRYHTKVRAG 73

HSP 2 Score: 49.6766 bits (117), Expect = 1.630e-18
Identity = 34/95 (35.79%), Postives = 50/95 (52.63%), Query Frame = 1 
Query:  268 FTLEEL*AAGIPTKLAPTIGVSLDHRRTIRSLDGVHSPVPTLKTWEA*LVVFPKTSYASSK--------------AGDFLPQRNWVQRHELSRTI 510
            F+LEEL  AGI  K+A TIG+S+D RR  +S + + + V  LK + + L++FP+   A  K               G  +P RN V + E +R I
Sbjct:   76 FSLEELRVAGIHKKVARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSAEELKLATQLTGPVMPIRN-VYKKEKARVI 169
[Close]
BLAST of EY684459 vs. ExPASy Swiss-Prot
Match: RL13_CRIGR (60S ribosomal protein L13 OS=Cricetulus griseus GN=RPL13 PE=2 SV=3)

HSP 1 Score: 64.6994 bits (156), Expect = 2.120e-18
Identity = 30/68 (44.12%), Postives = 42/68 (61.76%), Query Frame = 3 
Query:   57 NNVVPHGHFNNHWQNYVKTWFNQPALKYRRLFSRHNNAVKIFPRPTAGPLRPVDPGLTLKYNMILSAG 260
            N ++   HF+  WQ  V TWFNQPA K RR  +R   A +I PRP +GP+RP+    T++Y+  + AG
Sbjct:    6 NGMILKPHFHKDWQRRVDTWFNQPARKIRRRKARQAKARRIAPRPASGPIRPIVRCPTVRYHTKVRAG 73

HSP 2 Score: 49.2914 bits (116), Expect = 2.120e-18
Identity = 26/61 (42.62%), Postives = 39/61 (63.93%), Query Frame = 1 
Query:  268 FTLEEL*AAGIPTKLAPTIGVSLDHRRTIRSLDGVHSPVPTLKTWEA*LVVFPKTSYASSK 450
            F+LEEL  AGI  K+A TIG+S+D RR  +S + + + V  LK + + L++FP+   A  K
Sbjct:   76 FSLEELRVAGIHKKVARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKK 136
[Close]
BLAST of EY684459 vs. ExPASy Swiss-Prot
Match: RL13_BOVIN (60S ribosomal protein L13 OS=Bos taurus GN=RPL13 PE=2 SV=3)

HSP 1 Score: 65.855 bits (159), Expect = 2.756e-18
Identity = 32/68 (47.06%), Postives = 42/68 (61.76%), Query Frame = 3 
Query:   57 NNVVPHGHFNNHWQNYVKTWFNQPALKYRRLFSRHNNAVKIFPRPTAGPLRPVDPGLTLKYNMILSAG 260
            N ++   HF+  WQ  V TWFNQPA K RR  +R   A +I PRP +GPLRPV    T++Y+  + AG
Sbjct:    6 NGMILKPHFHKDWQRRVATWFNQPARKIRRRKARQAKARRIAPRPASGPLRPVVRCPTVRYHTKVRAG 73

HSP 2 Score: 47.7506 bits (112), Expect = 2.756e-18
Identity = 33/95 (34.74%), Postives = 49/95 (51.58%), Query Frame = 1 
Query:  268 FTLEEL*AAGIPTKLAPTIGVSLDHRRTIRSLDGVHSPVPTLKTWEA*LVVFPKTSYASSK--------------AGDFLPQRNWVQRHELSRTI 510
            F+LEEL  AGI  K+A TIG+S+D RR  +  + + + V  LK + + L++FP+   A  K               G  +P RN V + E +R I
Sbjct:   76 FSLEELRVAGIHKKVARTIGISVDPRRRNKCTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSAEELKLATQLTGPVMPIRN-VYKKEKARVI 169
The following BLAST results are available for this feature:
BLAST of EY684459 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
RL13_DANRE2.964e-2147.0660S ribosomal protein L13 OS=Danio rerio GN=rpl13 ... [more]
RL13_DROME8.482e-2150.0060S ribosomal protein L13 OS=Drosophila melanogast... [more]
RL13_DICDI8.494e-2153.6260S ribosomal protein L13 OS=Dictyostelium discoid... [more]
RL13_SCHPO1.437e-2049.2360S ribosomal protein L13 OS=Schizosaccharomyces p... [more]
RL13_CHICK9.638e-1945.5960S ribosomal protein L13 OS=Gallus gallus GN=RPL1... [more]
RL13_HUMAN9.638e-1945.5960S ribosomal protein L13 OS=Homo sapiens GN=RPL13... [more]
RL13_RAT1.253e-1844.1260S ribosomal protein L13 OS=Rattus norvegicus GN=... [more]
RL13_MOUSE1.630e-1844.1260S ribosomal protein L13 OS=Mus musculus GN=Rpl13... [more]
RL13_CRIGR2.120e-1844.1260S ribosomal protein L13 OS=Cricetulus griseus GN... [more]
RL13_BOVIN2.756e-1847.0660S ribosomal protein L13 OS=Bos taurus GN=RPL13 P... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-055-C10-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684459 ID=EY684459; Name=EY684459; organism=Citrus sinensis; type=EST; length=1026bp
CTGATAGAACCTGACATAGTCGTCTGCATTTCTCTCTGTAAACAGAAATG
AAACATAACAACGTTGTTCCTCATGGGCACTTTAATAATCATTGGCAGAA
CTATGTCAAGACTTGGTTCAACCAACCTGCTCTCAAATATCGACGACTAT
TCTCTCGTCACAATAATGCCGTTAAAATCTTCCCTCGCCCTACTGCTGGG
CCACTTCGTCCCGTCGATCCTGGCCTGACTTTGAAATACAACATGATATT
ATCGGCTGGCAGTATGCTTTACTCTTGAGGAACTCTAGGCTGCTGGAATT
CCCACCAAACTGGCTCCGACTATTGGTGTTTCACTCGATCATCGACGCAC
GATCCGTTCTCTTGATGGTGTTCACTCTCCTGTTCCTACGCTCAAGACTT
GGGAGGCTTAATTGGTTGTTTTCCCAAAGACGAGCTACGCGAGTTCCAAG
GCTGGTGATTTCCTCCCCCAGAGGAATTGGGTACAGCGACACGAATTATC
ACGTACCATATTTTGCCCCTATGCTTCCATGAAAAGCCTACTGTCGCAGT
TTGTTAAAGGTTACTCAGGATATGTATGTCCTTTCTAGGGGGTTATGAAC
AAATTCCTTAATTCAGCTGTGGGAACCAACCGCCATTTTTTGGTGCCCGG
AATAAAAAATGCTGTCAAAAGCTTTAGAAAGGGAGAAAAAAAAAATTAAT
AAAACTTTGTTTAAGACAAACATTTTTGTAATGGTGGGACTGTTTTATTG
GACTTATTGAATAAAGGAGAATTTCCAACTCCGTTCGCTTTTAACGTCCT
CACAAATAGATAAATTTTTTTTTTCGAAAGGGTGGGGAAAATTTTTCTCG
GGTTTTTATCTTTTTTTTGGCACGGAAACCTTCATTTCCGTTTGGTTTGC
TTTTTATTTTTTTGTTTTTTTTTTTCTCTAAGAATTATAAATTATAAATG
TTGTTTGTGGGCGAACTTCTCCTATAATACATTTTTTATGTGGGGGCTAT
TTTTTTATATATAAAAAAAAAATATC
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