EY684449
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EY684449 vs. ExPASy Swiss-Prot
Match: YTDC2_PONAB (YTH domain-containing protein 2 OS=Pongo abelii GN=YTHDC2 PE=2 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 1.274e-19 Identity = 59/156 (37.82%), Postives = 85/156 (54.49%), Query Frame = 2 Query: 116 KVPEMQRMPLVELCLQIKLLSLGRIKI--FLSKALEPPKEEAITTAISVLYEVGAIEGDEELTPLGHHLAKLPVDVLIGKMMLFGGIFGCLSPILSISAFLSYKSPFIYPKDEKQNVERAKLALLTDKLKGLSDSNDSSTQSDHPGLDGGIQKWEE 577 + PE+ RMPL ELCL KLL+ + FL KA EPP + A+ +L + A++ E+LT LG+HLA LPV+ +GKM+L + CL PIL+I+ L+Y+ PF+ P Q + A+L K + SDH L Q W++ Sbjct: 5 QTPELLRMPLQELCLHTKLLAPVNCPVADFLMKAPEPPPALIVRNAVQMLKTIDAMDTWEDLTELGYHLADLPVEPHLGKMVLCAVVLKCLDPILTIACTLAYRDPFVLPTQASQK----RAAMLCRK------RFTAGAFSDHMALLRAFQAWQK 150
BLAST of EY684449 vs. ExPASy Swiss-Prot
Match: DHX9_MOUSE (ATP-dependent RNA helicase A OS=Mus musculus GN=Dhx9 PE=1 SV=2) HSP 1 Score: 95.5153 bits (236), Expect = 4.841e-19 Identity = 56/123 (45.53%), Postives = 72/123 (58.54%), Query Frame = 2 Query: 86 FCYSLS-------LHNAKVPEMQRMPLVELCLQIKLLSLGRIKIFLSKALEPPKEEAITTAISVLYEVGAIEGDEELTPLGHHLAKLPVDVLIGKMMLFGGIFGCLSPILSISAFLSYKSPFI 433 FC+ L L PEM R PL E+ L IKLL LG I FL+KA+EPP +AI A L E+ A++ ++ELTPLG LAKLP++ GKMM+ G IF + +ISA + PFI Sbjct: 774 FCFHLCSRARFDRLETHMTPEMFRTPLHEIALSIKLLRLGGIGQFLAKAIEPPPLDAIIEAEHTLRELDALDANDELTPLGRILAKLPIEPRFGKMMIMGCIFYVGDAVCTISAATCFPEPFI 896
BLAST of EY684449 vs. ExPASy Swiss-Prot
Match: DHX9_BOVIN (ATP-dependent RNA helicase A OS=Bos taurus GN=DHX9 PE=2 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 4.841e-19 Identity = 56/123 (45.53%), Postives = 72/123 (58.54%), Query Frame = 2 Query: 86 FCYSLS-------LHNAKVPEMQRMPLVELCLQIKLLSLGRIKIFLSKALEPPKEEAITTAISVLYEVGAIEGDEELTPLGHHLAKLPVDVLIGKMMLFGGIFGCLSPILSISAFLSYKSPFI 433 FC+ L L PEM R PL E+ L IKLL LG I FL+KA+EPP +A+ A L E+ A++ ++ELTPLG LAKLP++ GKMM+ G IF I +ISA + PFI Sbjct: 769 FCFHLCSRARFERLETHMTPEMFRTPLHEIALSIKLLRLGGIGQFLAKAIEPPPLDAVIEAEHTLRELDALDANDELTPLGRILAKLPIEPRFGKMMIMGCIFYVGDAICTISAATCFPEPFI 891
BLAST of EY684449 vs. ExPASy Swiss-Prot
Match: YUM14_USTMA (Putative DEAH-box ATP-dependent helicase UM11114 OS=Ustilago maydis GN=UM11114 PE=3 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 6.323e-19 Identity = 53/165 (32.12%), Postives = 96/165 (58.18%), Query Frame = 2 Query: 116 KVPEMQRMPLVELCLQIKLLSLGR-IKIFLSKALEPPKEEAITTAISVLYEVGAIEGDE----ELTPLGHHLAKLPVDVLIGKMMLFGGIFGCLSPILSISAFLSYKSPFIYPKDEKQNVERAKLALL-----TDKLKGLSDSNDSSTQSDHPGLDGGIQKWEEN 580 + PEM+R+PL L L++K + +K +L+KAL+PP ++ A++ L E GA++ D LT LG HLA+LP+D+ + K+++ G IFGCL P+L++++ +S K F P ++++ +A+ + +D L + + T +G I++W E+ Sbjct: 1164 QTPEMRRVPLESLFLEVKSMREDEDVKEYLNKALDPPSLASMDAALTNLIEAGALQSDRGYKSRLTSLGKHLAQLPLDLRLAKLLIMGTIFGCLGPMLTVASIMSCKPLFNTPFEKREEASKARASFAAAGCRSDLLADAAAFEEWQTMRAQRKTNGEIREWCES 1328
BLAST of EY684449 vs. ExPASy Swiss-Prot
Match: DHX9_XENLA (ATP-dependent RNA helicase A-like protein OS=Xenopus laevis GN=dhx9 PE=2 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 8.258e-19 Identity = 55/123 (44.72%), Postives = 73/123 (59.35%), Query Frame = 2 Query: 86 FCYSL-------SLHNAKVPEMQRMPLVELCLQIKLLSLGRIKIFLSKALEPPKEEAITTAISVLYEVGAIEGDEELTPLGHHLAKLPVDVLIGKMMLFGGIFGCLSPILSISAFLSYKSPFI 433 FC+ L L PE+ R PL E+ L IKLL LG I FLSKA+EPP +A+ A L E+ A++ ++ELTPLG LAKLP++ +GKMM+ G IF + +ISA + PFI Sbjct: 774 FCFHLCSKARFDKLETHLTPEIFRTPLHEVALSIKLLRLGGIGHFLSKAIEPPPLDAVIEAEHTLRELDALDSNDELTPLGRILAKLPIEPRLGKMMIIGCIFYVGDALCTISAATCFPEPFI 896
BLAST of EY684449 vs. ExPASy Swiss-Prot
Match: DHX9_PONAB (ATP-dependent RNA helicase A OS=Pongo abelii GN=DHX9 PE=2 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 1.079e-18 Identity = 55/123 (44.72%), Postives = 72/123 (58.54%), Query Frame = 2 Query: 86 FCYSLS-------LHNAKVPEMQRMPLVELCLQIKLLSLGRIKIFLSKALEPPKEEAITTAISVLYEVGAIEGDEELTPLGHHLAKLPVDVLIGKMMLFGGIFGCLSPILSISAFLSYKSPFI 433 FC+ L L PEM R PL E+ L IKLL LG I FL+KA+EPP +A+ A L E+ A++ ++ELTPLG LAKLP++ GKMM+ G IF I +I+A + PFI Sbjct: 772 FCFHLCSRARFERLETHMTPEMFRTPLHEIALSIKLLRLGGIGQFLAKAIEPPPLDAVIEAEHTLRELDALDANDELTPLGRILAKLPIEPRFGKMMIMGCIFYVGDAICTIAAATCFPEPFI 894
BLAST of EY684449 vs. ExPASy Swiss-Prot
Match: DHX9_HUMAN (ATP-dependent RNA helicase A OS=Homo sapiens GN=DHX9 PE=1 SV=4) HSP 1 Score: 94.3597 bits (233), Expect = 1.079e-18 Identity = 55/123 (44.72%), Postives = 72/123 (58.54%), Query Frame = 2 Query: 86 FCYSLS-------LHNAKVPEMQRMPLVELCLQIKLLSLGRIKIFLSKALEPPKEEAITTAISVLYEVGAIEGDEELTPLGHHLAKLPVDVLIGKMMLFGGIFGCLSPILSISAFLSYKSPFI 433 FC+ L L PEM R PL E+ L IKLL LG I FL+KA+EPP +A+ A L E+ A++ ++ELTPLG LAKLP++ GKMM+ G IF I +I+A + PFI Sbjct: 772 FCFHLCSRARFERLETHMTPEMFRTPLHEIALSIKLLRLGGIGQFLAKAIEPPPLDAVIEAEHTLRELDALDANDELTPLGRILAKLPIEPRFGKMMIMGCIFYVGDAICTIAAATCFPEPFI 894
BLAST of EY684449 vs. ExPASy Swiss-Prot
Match: DHX34_MOUSE (Probable ATP-dependent RNA helicase DHX34 OS=Mus musculus GN=Dhx34 PE=2 SV=2) HSP 1 Score: 94.3597 bits (233), Expect = 1.079e-18 Identity = 52/125 (41.60%), Postives = 78/125 (62.40%), Query Frame = 2 Query: 119 VPEMQRMPLVELCLQIKLLSLGRIKIFLSKALEPPKEEAITTAISVLYEVGAIEGDEELTPLGHHLAKLPVDVLIGKMMLFGGIFGCLSPILSISAFLSYKSPFIYPKDEKQNVERAKLALLTDK 493 VPE++R+ L L LQ+K +S+G + F +EPP ++ TAI L E GA++ E LTP+G LA+LPVDV+IGKM++ G +F P+L+I+A LS +SPF + A+ L +D+ Sbjct: 519 VPEIRRVALDALVLQMKSMSVGDPRTF--PFIEPPPPASVETAILYLQEQGALDSSEALTPIGSLLAQLPVDVVIGKMLILGSMFSLAEPVLTIAAALSVQSPFTRSAQSNLDCATARRPLESDQ 641
BLAST of EY684449 vs. ExPASy Swiss-Prot
Match: DHX34_HUMAN (Probable ATP-dependent RNA helicase DHX34 OS=Homo sapiens GN=DHX34 PE=2 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 4.098e-18 Identity = 48/104 (46.15%), Postives = 72/104 (69.23%), Query Frame = 2 Query: 119 VPEMQRMPLVELCLQIKLLSLGRIKIFLSKALEPPKEEAITTAISVLYEVGAIEGDEELTPLGHHLAKLPVDVLIGKMMLFGGIFGCLSPILSISAFLSYKSPF 430 VPE++R+ L L LQ+K +S+G + F +EPP ++ TAI L + GA++ E LTP+G LA+LPVDV+IGKM++ G +F + P+L+I+A LS +SPF Sbjct: 432 VPEIRRVALDSLVLQMKSMSVGDPRTF--PFIEPPPPASLETAILYLRDQGALDSSEALTPIGSLLAQLPVDVVIGKMLILGSMFSLVEPVLTIAAALSVQSPF 533
BLAST of EY684449 vs. ExPASy Swiss-Prot
Match: UCP12_SCHPO (Putative ATP-dependent RNA helicase ucp12 OS=Schizosaccharomyces pombe GN=ucp12 PE=2 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 5.918e-17 Identity = 45/115 (39.13%), Postives = 70/115 (60.87%), Query Frame = 2 Query: 122 PEMQRMPLVELCLQIKLL-----------SLGRIKIFLSKALEPPKEEAITTAISVLYEVGAIEGDEELTPLGHHLAKLPVDVLIGKMMLFGGIFGCLSPILSISAFLSYKSPFI 433 PE+ R L ++CL + L + G IK F++ ++PP + + A+ L +VGA+ E+LT LG +L LP+D+ +GK+++FG IFG L P L+I+A LS KSPF+ Sbjct: 950 PEVLRTALSQVCLNVVPLVKRFSSAGNSVNQGSIKKFMNSLIDPPNDATVDLALKKLIQVGALTVSEDLTGLGEYLVSLPIDLKLGKLLVFGSIFGYLEPALTITAILSTKSPFL 1064 The following BLAST results are available for this feature:
BLAST of EY684449 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 46
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Sequences
The
following sequences are available for this feature:
EST sequence >EY684449 ID=EY684449; Name=EY684449; organism=Citrus sinensis; type=EST; length=964bpback to top |