EY684449

Overview
NameEY684449
Unique NameEY684449
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length964
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684449 vs. ExPASy Swiss-Prot
Match: YTDC2_PONAB (YTH domain-containing protein 2 OS=Pongo abelii GN=YTHDC2 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.274e-19
Identity = 59/156 (37.82%), Postives = 85/156 (54.49%), Query Frame = 2
Query:  116 KVPEMQRMPLVELCLQIKLLSLGRIKI--FLSKALEPPKEEAITTAISVLYEVGAIEGDEELTPLGHHLAKLPVDVLIGKMMLFGGIFGCLSPILSISAFLSYKSPFIYPKDEKQNVERAKLALLTDKLKGLSDSNDSSTQSDHPGLDGGIQKWEE 577
            + PE+ RMPL ELCL  KLL+     +  FL KA EPP    +  A+ +L  + A++  E+LT LG+HLA LPV+  +GKM+L   +  CL PIL+I+  L+Y+ PF+ P    Q     + A+L  K         +   SDH  L    Q W++
Sbjct:    5 QTPELLRMPLQELCLHTKLLAPVNCPVADFLMKAPEPPPALIVRNAVQMLKTIDAMDTWEDLTELGYHLADLPVEPHLGKMVLCAVVLKCLDPILTIACTLAYRDPFVLPTQASQK----RAAMLCRK------RFTAGAFSDHMALLRAFQAWQK 150          
BLAST of EY684449 vs. ExPASy Swiss-Prot
Match: DHX9_MOUSE (ATP-dependent RNA helicase A OS=Mus musculus GN=Dhx9 PE=1 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 4.841e-19
Identity = 56/123 (45.53%), Postives = 72/123 (58.54%), Query Frame = 2
Query:   86 FCYSLS-------LHNAKVPEMQRMPLVELCLQIKLLSLGRIKIFLSKALEPPKEEAITTAISVLYEVGAIEGDEELTPLGHHLAKLPVDVLIGKMMLFGGIFGCLSPILSISAFLSYKSPFI 433
            FC+ L        L     PEM R PL E+ L IKLL LG I  FL+KA+EPP  +AI  A   L E+ A++ ++ELTPLG  LAKLP++   GKMM+ G IF     + +ISA   +  PFI
Sbjct:  774 FCFHLCSRARFDRLETHMTPEMFRTPLHEIALSIKLLRLGGIGQFLAKAIEPPPLDAIIEAEHTLRELDALDANDELTPLGRILAKLPIEPRFGKMMIMGCIFYVGDAVCTISAATCFPEPFI 896          
BLAST of EY684449 vs. ExPASy Swiss-Prot
Match: DHX9_BOVIN (ATP-dependent RNA helicase A OS=Bos taurus GN=DHX9 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 4.841e-19
Identity = 56/123 (45.53%), Postives = 72/123 (58.54%), Query Frame = 2
Query:   86 FCYSLS-------LHNAKVPEMQRMPLVELCLQIKLLSLGRIKIFLSKALEPPKEEAITTAISVLYEVGAIEGDEELTPLGHHLAKLPVDVLIGKMMLFGGIFGCLSPILSISAFLSYKSPFI 433
            FC+ L        L     PEM R PL E+ L IKLL LG I  FL+KA+EPP  +A+  A   L E+ A++ ++ELTPLG  LAKLP++   GKMM+ G IF     I +ISA   +  PFI
Sbjct:  769 FCFHLCSRARFERLETHMTPEMFRTPLHEIALSIKLLRLGGIGQFLAKAIEPPPLDAVIEAEHTLRELDALDANDELTPLGRILAKLPIEPRFGKMMIMGCIFYVGDAICTISAATCFPEPFI 891          
BLAST of EY684449 vs. ExPASy Swiss-Prot
Match: YUM14_USTMA (Putative DEAH-box ATP-dependent helicase UM11114 OS=Ustilago maydis GN=UM11114 PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 6.323e-19
Identity = 53/165 (32.12%), Postives = 96/165 (58.18%), Query Frame = 2
Query:  116 KVPEMQRMPLVELCLQIKLLSLGR-IKIFLSKALEPPKEEAITTAISVLYEVGAIEGDE----ELTPLGHHLAKLPVDVLIGKMMLFGGIFGCLSPILSISAFLSYKSPFIYPKDEKQNVERAKLALL-----TDKLKGLSDSNDSSTQSDHPGLDGGIQKWEEN 580
            + PEM+R+PL  L L++K +     +K +L+KAL+PP   ++  A++ L E GA++ D      LT LG HLA+LP+D+ + K+++ G IFGCL P+L++++ +S K  F  P ++++   +A+ +       +D L   +   +  T       +G I++W E+
Sbjct: 1164 QTPEMRRVPLESLFLEVKSMREDEDVKEYLNKALDPPSLASMDAALTNLIEAGALQSDRGYKSRLTSLGKHLAQLPLDLRLAKLLIMGTIFGCLGPMLTVASIMSCKPLFNTPFEKREEASKARASFAAAGCRSDLLADAAAFEEWQTMRAQRKTNGEIREWCES 1328          
BLAST of EY684449 vs. ExPASy Swiss-Prot
Match: DHX9_XENLA (ATP-dependent RNA helicase A-like protein OS=Xenopus laevis GN=dhx9 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 8.258e-19
Identity = 55/123 (44.72%), Postives = 73/123 (59.35%), Query Frame = 2
Query:   86 FCYSL-------SLHNAKVPEMQRMPLVELCLQIKLLSLGRIKIFLSKALEPPKEEAITTAISVLYEVGAIEGDEELTPLGHHLAKLPVDVLIGKMMLFGGIFGCLSPILSISAFLSYKSPFI 433
            FC+ L        L     PE+ R PL E+ L IKLL LG I  FLSKA+EPP  +A+  A   L E+ A++ ++ELTPLG  LAKLP++  +GKMM+ G IF     + +ISA   +  PFI
Sbjct:  774 FCFHLCSKARFDKLETHLTPEIFRTPLHEVALSIKLLRLGGIGHFLSKAIEPPPLDAVIEAEHTLRELDALDSNDELTPLGRILAKLPIEPRLGKMMIIGCIFYVGDALCTISAATCFPEPFI 896          
BLAST of EY684449 vs. ExPASy Swiss-Prot
Match: DHX9_PONAB (ATP-dependent RNA helicase A OS=Pongo abelii GN=DHX9 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.079e-18
Identity = 55/123 (44.72%), Postives = 72/123 (58.54%), Query Frame = 2
Query:   86 FCYSLS-------LHNAKVPEMQRMPLVELCLQIKLLSLGRIKIFLSKALEPPKEEAITTAISVLYEVGAIEGDEELTPLGHHLAKLPVDVLIGKMMLFGGIFGCLSPILSISAFLSYKSPFI 433
            FC+ L        L     PEM R PL E+ L IKLL LG I  FL+KA+EPP  +A+  A   L E+ A++ ++ELTPLG  LAKLP++   GKMM+ G IF     I +I+A   +  PFI
Sbjct:  772 FCFHLCSRARFERLETHMTPEMFRTPLHEIALSIKLLRLGGIGQFLAKAIEPPPLDAVIEAEHTLRELDALDANDELTPLGRILAKLPIEPRFGKMMIMGCIFYVGDAICTIAAATCFPEPFI 894          
BLAST of EY684449 vs. ExPASy Swiss-Prot
Match: DHX9_HUMAN (ATP-dependent RNA helicase A OS=Homo sapiens GN=DHX9 PE=1 SV=4)

HSP 1 Score: 94.3597 bits (233), Expect = 1.079e-18
Identity = 55/123 (44.72%), Postives = 72/123 (58.54%), Query Frame = 2
Query:   86 FCYSLS-------LHNAKVPEMQRMPLVELCLQIKLLSLGRIKIFLSKALEPPKEEAITTAISVLYEVGAIEGDEELTPLGHHLAKLPVDVLIGKMMLFGGIFGCLSPILSISAFLSYKSPFI 433
            FC+ L        L     PEM R PL E+ L IKLL LG I  FL+KA+EPP  +A+  A   L E+ A++ ++ELTPLG  LAKLP++   GKMM+ G IF     I +I+A   +  PFI
Sbjct:  772 FCFHLCSRARFERLETHMTPEMFRTPLHEIALSIKLLRLGGIGQFLAKAIEPPPLDAVIEAEHTLRELDALDANDELTPLGRILAKLPIEPRFGKMMIMGCIFYVGDAICTIAAATCFPEPFI 894          
BLAST of EY684449 vs. ExPASy Swiss-Prot
Match: DHX34_MOUSE (Probable ATP-dependent RNA helicase DHX34 OS=Mus musculus GN=Dhx34 PE=2 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 1.079e-18
Identity = 52/125 (41.60%), Postives = 78/125 (62.40%), Query Frame = 2
Query:  119 VPEMQRMPLVELCLQIKLLSLGRIKIFLSKALEPPKEEAITTAISVLYEVGAIEGDEELTPLGHHLAKLPVDVLIGKMMLFGGIFGCLSPILSISAFLSYKSPFIYPKDEKQNVERAKLALLTDK 493
            VPE++R+ L  L LQ+K +S+G  + F    +EPP   ++ TAI  L E GA++  E LTP+G  LA+LPVDV+IGKM++ G +F    P+L+I+A LS +SPF        +   A+  L +D+
Sbjct:  519 VPEIRRVALDALVLQMKSMSVGDPRTF--PFIEPPPPASVETAILYLQEQGALDSSEALTPIGSLLAQLPVDVVIGKMLILGSMFSLAEPVLTIAAALSVQSPFTRSAQSNLDCATARRPLESDQ 641          
BLAST of EY684449 vs. ExPASy Swiss-Prot
Match: DHX34_HUMAN (Probable ATP-dependent RNA helicase DHX34 OS=Homo sapiens GN=DHX34 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 4.098e-18
Identity = 48/104 (46.15%), Postives = 72/104 (69.23%), Query Frame = 2
Query:  119 VPEMQRMPLVELCLQIKLLSLGRIKIFLSKALEPPKEEAITTAISVLYEVGAIEGDEELTPLGHHLAKLPVDVLIGKMMLFGGIFGCLSPILSISAFLSYKSPF 430
            VPE++R+ L  L LQ+K +S+G  + F    +EPP   ++ TAI  L + GA++  E LTP+G  LA+LPVDV+IGKM++ G +F  + P+L+I+A LS +SPF
Sbjct:  432 VPEIRRVALDSLVLQMKSMSVGDPRTF--PFIEPPPPASLETAILYLRDQGALDSSEALTPIGSLLAQLPVDVVIGKMLILGSMFSLVEPVLTIAAALSVQSPF 533          
BLAST of EY684449 vs. ExPASy Swiss-Prot
Match: UCP12_SCHPO (Putative ATP-dependent RNA helicase ucp12 OS=Schizosaccharomyces pombe GN=ucp12 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 5.918e-17
Identity = 45/115 (39.13%), Postives = 70/115 (60.87%), Query Frame = 2
Query:  122 PEMQRMPLVELCLQIKLL-----------SLGRIKIFLSKALEPPKEEAITTAISVLYEVGAIEGDEELTPLGHHLAKLPVDVLIGKMMLFGGIFGCLSPILSISAFLSYKSPFI 433
            PE+ R  L ++CL +  L           + G IK F++  ++PP +  +  A+  L +VGA+   E+LT LG +L  LP+D+ +GK+++FG IFG L P L+I+A LS KSPF+
Sbjct:  950 PEVLRTALSQVCLNVVPLVKRFSSAGNSVNQGSIKKFMNSLIDPPNDATVDLALKKLIQVGALTVSEDLTGLGEYLVSLPIDLKLGKLLVFGSIFGYLEPALTITAILSTKSPFL 1064          
The following BLAST results are available for this feature:
BLAST of EY684449 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
YTDC2_PONAB1.274e-1937.82YTH domain-containing protein 2 OS=Pongo abelii GN... [more]
DHX9_MOUSE4.841e-1945.53ATP-dependent RNA helicase A OS=Mus musculus GN=Dh... [more]
DHX9_BOVIN4.841e-1945.53ATP-dependent RNA helicase A OS=Bos taurus GN=DHX9... [more]
YUM14_USTMA6.323e-1932.12Putative DEAH-box ATP-dependent helicase UM11114 O... [more]
DHX9_XENLA8.258e-1944.72ATP-dependent RNA helicase A-like protein OS=Xenop... [more]
DHX9_PONAB1.079e-1844.72ATP-dependent RNA helicase A OS=Pongo abelii GN=DH... [more]
DHX9_HUMAN1.079e-1844.72ATP-dependent RNA helicase A OS=Homo sapiens GN=DH... [more]
DHX34_MOUSE1.079e-1841.60Probable ATP-dependent RNA helicase DHX34 OS=Mus m... [more]
DHX34_HUMAN4.098e-1846.15Probable ATP-dependent RNA helicase DHX34 OS=Homo ... [more]
UCP12_SCHPO5.918e-1739.13Putative ATP-dependent RNA helicase ucp12 OS=Schiz... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-055-B11-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684449 ID=EY684449; Name=EY684449; organism=Citrus sinensis; type=EST; length=964bp
CCGGGGAATTTCCCGGGGTCGACCCCACGCGTCCGCGGACGCGTGGGTCA
CACTACTCTTGATCACTTGATATTTCTCCTGCAACTTTTGTTATTCTTTG
TCTCTCCACAATGCCAAGGTTCCTGAGATGCAGCGGATGCCTCTGGTTGA
GTTGTGTTTACAAATTAAGTTACTTTCTCTAGGACGCATAAAGATATTTC
TATCCAAGGCGTTAGAACCTCCTAAGGAAGAAGCTATTACTACTGCAATT
TCAGTATTGTATGAGGTTGGTGCTATTGAAGGGGATGAGGAATTGACCCC
TCTTGGCCATCATTTGGCCAAACTTCCTGTTGATGTATTGATTGGAAAGA
TGATGCTCTTTGGTGGAATATTTGGTTGCTTATCTCCCATTCTCTCTATA
TCAGCTTTTCTTAGCTACAAATCACCATTTATTTATCCCAAGGATGAGAA
GCAAAATGTTGAAAGAGCTAAATTGGCTCTATTAACTGATAAGCTAAAGG
GATTAAGTGATTCAAATGACAGTTCAACGCAATCTGACCATCCTGGATTG
GATGGTGGCATACAGAAATGGGAAGAAAATATGGCTCAAAAGAGGAAATA
AAGGCCGCCCAGCAGTTTCTGGGCGTAAATACTTTTTAAGCAGTTCTTTT
ATTGTACATGATAAGAAAAAATAAGGATACGGTTTGGAAAATTTGCTGGG
GAAAATTTGGAATGGATTAATTCTTTCCAAACAAAATTCCAAATGGGGGG
AAAAAAAAAAAGGAAAAACCTTTGAACATTGGTTTTTTCTGAAAAAAACC
CAAAAGGGTTAAATTATGGTTAGGAAAACACATTCCCCAATTGGGGGAAG
GGAAAAAATAATGGGGGCGGGGCCTGGAACCCCCTTAAGGGGGGGTGTGC
CCCCGTGAGAAAAGGGGGATTTGTGGGGGGGAGTTGGTTCCTTTAAAACA
TCCTTTATTAAAAA
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