EY684417

Overview
NameEY684417
Unique NameEY684417
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length943
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684417 vs. ExPASy Swiss-Prot
Match: CB2A_SPIOL (Chlorophyll a-b binding protein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 5.686e-17
Identity = 40/42 (95.24%), Postives = 41/42 (97.62%), Query Frame = 3
Query:    3 MFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 128
            MFGFFVQAIVTGKGPLENLADHLADPVNNNAW +ATNFVPGK
Sbjct:  226 MFGFFVQAIVTGKGPLENLADHLADPVNNNAWNFATNFVPGK 267          
BLAST of EY684417 vs. ExPASy Swiss-Prot
Match: CB25_SOLLC (Chlorophyll a-b binding protein 5, chloroplastic (Fragment) OS=Solanum lycopersicum GN=CAB5 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 2.161e-16
Identity = 38/42 (90.48%), Postives = 41/42 (97.62%), Query Frame = 3
Query:    3 MFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 128
            MFGFFVQAIVTGKGP+ENL+DH+ADPV NNAWAYATNFVPGK
Sbjct:  196 MFGFFVQAIVTGKGPIENLSDHIADPVANNAWAYATNFVPGK 237          
BLAST of EY684417 vs. ExPASy Swiss-Prot
Match: CB22_PINSY (Chlorophyll a-b binding protein type 2 member 2 (Fragment) OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.822e-16
Identity = 39/42 (92.86%), Postives = 40/42 (95.24%), Query Frame = 3
Query:    3 MFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 128
            MFGFFVQAIVTGKGP+ENL DHLADPV NNAWAYATNFVPGK
Sbjct:  109 MFGFFVQAIVTGKGPIENLYDHLADPVANNAWAYATNFVPGK 150          
BLAST of EY684417 vs. ExPASy Swiss-Prot
Match: CB22_PETSP (Chlorophyll a-b binding protein 22L, chloroplastic OS=Petunia sp. GN=CAB22L PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.822e-16
Identity = 38/42 (90.48%), Postives = 40/42 (95.24%), Query Frame = 3
Query:    3 MFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 128
            MFGFF+QAIVTGKGPLENLADHL DPVNNNAW+YATNFVP K
Sbjct:  226 MFGFFIQAIVTGKGPLENLADHLVDPVNNNAWSYATNFVPRK 267          
BLAST of EY684417 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.822e-16
Identity = 39/42 (92.86%), Postives = 40/42 (95.24%), Query Frame = 3
Query:    3 MFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 128
            MFGFFVQAIVTGKGP+ENL DHLADPV NNAWAYATNFVPGK
Sbjct:  225 MFGFFVQAIVTGKGPIENLYDHLADPVANNAWAYATNFVPGK 266          
BLAST of EY684417 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.822e-16
Identity = 38/42 (90.48%), Postives = 41/42 (97.62%), Query Frame = 3
Query:    3 MFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 128
            MFGFFVQAIVTGKGP+ENLADH+ADPV NNAWA+ATNFVPGK
Sbjct:  223 MFGFFVQAIVTGKGPIENLADHIADPVANNAWAFATNFVPGK 264          
BLAST of EY684417 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 2.822e-16
Identity = 39/42 (92.86%), Postives = 40/42 (95.24%), Query Frame = 3
Query:    3 MFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 128
            MFGFFVQAIVTGKGP+ENL DHLADPV NNAWAYATNFVPGK
Sbjct:  224 MFGFFVQAIVTGKGPIENLFDHLADPVANNAWAYATNFVPGK 265          
BLAST of EY684417 vs. ExPASy Swiss-Prot
Match: CB22_SOYBN (Chlorophyll a-b binding protein 2, chloroplastic OS=Glycine max GN=CAB2 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.685e-16
Identity = 39/42 (92.86%), Postives = 39/42 (92.86%), Query Frame = 3
Query:    3 MFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 128
            MFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYAT   PGK
Sbjct:  215 MFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATKLCPGK 256          
BLAST of EY684417 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 6.286e-16
Identity = 38/42 (90.48%), Postives = 40/42 (95.24%), Query Frame = 3
Query:    3 MFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 128
            MFGFFVQAIVTGKGP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct:  224 MFGFFVQAIVTGKGPIENLFDHVADPVANNAWAYATNFVPGK 265          
BLAST of EY684417 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 6.286e-16
Identity = 38/42 (90.48%), Postives = 40/42 (95.24%), Query Frame = 3
Query:    3 MFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 128
            MFGFFVQAIVTGKGP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct:  222 MFGFFVQAIVTGKGPIENLFDHVADPVANNAWAYATNFVPGK 263          
The following BLAST results are available for this feature:
BLAST of EY684417 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
CB2A_SPIOL5.686e-1795.24Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB25_SOLLC2.161e-1690.48Chlorophyll a-b binding protein 5, chloroplastic (... [more]
CB22_PINSY2.822e-1692.86Chlorophyll a-b binding protein type 2 member 2 (F... [more]
CB22_PETSP2.822e-1690.48Chlorophyll a-b binding protein 22L, chloroplastic... [more]
CB21_PINTH2.822e-1692.86Chlorophyll a-b binding protein type I, chloroplas... [more]
CB21_LEMGI2.822e-1690.48Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB21_GOSHI2.822e-1692.86Chlorophyll a-b binding protein 151, chloroplastic... [more]
CB22_SOYBN3.685e-1692.86Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB23_TOBAC6.286e-1690.48Chlorophyll a-b binding protein 36, chloroplastic ... [more]
CB23_ORYSJ6.286e-1690.48Chlorophyll a-b binding protein, chloroplastic OS=... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-052-G12-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684417 ID=EY684417; Name=EY684417; organism=Citrus sinensis; type=EST; length=943bp
CCATGTTTGGTTTCTTCGTTCAGGCCATTGTCACCGGCAAGGGACCGTTA
GAGAACTTGGCCGACCACTTGGCCGACCCTGTCAACAACAATGCCTGGGC
CTACGCCACCAACTTTGTCCCCGGAAAGTGAGCTTCGGTTGATAACATTA
GTAGCGTGGAAATTGGAATTGAGAGTGATTGGTTATTGATGTGACTCTAT
TTCAACTTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAAAAAAAAA
AAAAAAAAAAAATAATTGAAAAAAAAGGGGGGCCCCCCCTATAAAAAAAA
AATTAAAAGAAGGGGGGGGGAGAAACACACAAAGACTCTTAAAAAAGGGA
ACCCAAAAATTATACACGGGGGCCGCCCTTTTTTACACATCTTGAGTATG
AGGAGAAAACCCCGGGGTTTATCCCCTTAATAAAAGCCCCGTGAGAAACA
ACGTCCCCCTTTTTAACAGTTAGGGAGAAAAAAAAAAAAAGAGACCCCCC
CCCACTATTACCCCCCCATCAAAAGTAGCGGCACCCGGCCTCGGGAGGGG
CACAACGGGGGGAAGCCCCTCCCTGAAGCACGACGCCAAAAAGAAAGCCG
CGGAGGGGGGGGGTGAGGGTGTAAAAACCACAACGTGGGAGAACACACTA
AAAATATTGTGCAAAGGCGCGAACCAATTAACAGTCCCCACACTTATATT
ATAATTATTTTATATTACATTATTCTTATGTTTTGCCCCCACATATGAGA
GGGGCGCGGGGCTTTGTATCATGCGATGAAAGATAGATACTAAAAAAGAA
TAGGGGGGGAGGATCCATCCTCTTTTAAAGAGGGCGGACACACAAAAAAA
ATATAAAATTGTATGTATTTTATAACTAGCTAACACCACCCAC
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