EY684352

Overview
NameEY684352
Unique NameEY684352
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length858
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684352 vs. ExPASy Swiss-Prot
Match: G3PC_TRYBB (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Trypanosoma brucei brucei PE=1 SV=3)

HSP 1 Score: 84.3445 bits (207), Expect = 9.285e-16
Identity = 46/117 (39.32%), Postives = 68/117 (58.12%), Query Frame = 2
Query:  278 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPWCWKPIPPGCQE 628
            ++V INGFGRIGR   R    R D  +++V +ND       +++LKYDS  G F+  V+ V    + V+GK I+V S RDP  L W E+ +D+V+E TG+F+      K I  G ++
Sbjct:    3 IRVGINGFGRIGRVVFRAAQRRND--IEIVGINDLLDADYMAYMLKYDSTHGRFEGAVE-VQGGALVVNGKKIRVTSERDPANLKWNEINVDVVVESTGLFLSDDTARKHIQAGAKK 116          
BLAST of EY684352 vs. ExPASy Swiss-Prot
Match: E4PD_SHESM (D-erythrose-4-phosphate dehydrogenase OS=Shewanella sp. (strain MR-4) GN=epd PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 9.285e-16
Identity = 45/118 (38.14%), Postives = 70/118 (59.32%), Query Frame = 2
Query:  278 LKVAINGFGRIGRNFLRC-WHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPWCWKPIPPGCQE 628
            ++VAING+GRIGR+ LR  +   K   + +V +N+    +   HL +YD+  G F+  VK+VD++ +  D  +IK++   DP +LPW E+ IDIV E TG  +D   C   I  G ++
Sbjct:    2 IRVAINGYGRIGRSILRALYESGKRQQIQIVAINELAKPEAIVHLTQYDTTHGRFQPRVKLVDDQMLIGDD-VIKILHEPDPAKLPWHEMDIDIVYEATGAILDRNSCEAHIHAGAKQ 118          
BLAST of EY684352 vs. ExPASy Swiss-Prot
Match: E4PD_SHESA (D-erythrose-4-phosphate dehydrogenase OS=Shewanella sp. (strain ANA-3) GN=epd PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 9.285e-16
Identity = 45/118 (38.14%), Postives = 70/118 (59.32%), Query Frame = 2
Query:  278 LKVAINGFGRIGRNFLRC-WHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPWCWKPIPPGCQE 628
            ++VAING+GRIGR+ LR  +   K   + +V +N+    +   HL +YD+  G F+  VK+VD++ +  D  +IK++   DP +LPW E+ IDIV E TG  +D   C   I  G ++
Sbjct:    2 IRVAINGYGRIGRSILRALYESGKRQQIQIVAINELAKPEAIIHLTQYDTTHGRFQPRVKLVDDQMLIGDD-VIKILHEPDPAKLPWREMDIDIVYEATGAILDRNSCEAHILAGAKQ 118          
BLAST of EY684352 vs. ExPASy Swiss-Prot
Match: G3P_YARLI (Glyceraldehyde-3-phosphate dehydrogenase OS=Yarrowia lipolytica GN=GPD PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.213e-15
Identity = 48/102 (47.06%), Postives = 63/102 (61.76%), Query Frame = 2
Query:  278 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSG-GVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVF 580
            +KV INGFGRIGR  LR  +  K+  ++VV VND     + A+++ KYDS  G FK  V+  D   I +DGK I+V   RDP  +PW + G D V+E TGVF
Sbjct:    3 IKVGINGFGRIGRIVLR--NALKNPEVEVVAVNDPFIDTEYAAYMFKYDSTHGRFKGKVEAKDGGLI-IDGKHIQVFGERDPSNIPWGKAGADYVVESTGVF 101          
BLAST of EY684352 vs. ExPASy Swiss-Prot
Match: E4PD_SHESW (D-erythrose-4-phosphate dehydrogenase OS=Shewanella sp. (strain W3-18-1) GN=epd PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.213e-15
Identity = 46/118 (38.98%), Postives = 68/118 (57.63%), Query Frame = 2
Query:  278 LKVAINGFGRIGRNFLRC-WHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPWCWKPIPPGCQE 628
            ++VAING+GRIGR+ LR  +   K   + +V +N+    +   HL +YD+  G F+  VK+VDN  +  D   IK++   D  +LPW E+ IDIV E TGV +D   C   I  G ++
Sbjct:    2 IRVAINGYGRIGRSILRALYESGKRQQIQIVAINELAKPEAIIHLTQYDTTHGRFQHKVKLVDNHMLIGDDA-IKILHEPDAAKLPWREMDIDIVYEATGVILDRQSCEAHIHAGAKQ 118          
BLAST of EY684352 vs. ExPASy Swiss-Prot
Match: E4PD_SHEPC (D-erythrose-4-phosphate dehydrogenase OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=epd PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.213e-15
Identity = 46/118 (38.98%), Postives = 68/118 (57.63%), Query Frame = 2
Query:  278 LKVAINGFGRIGRNFLRC-WHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPWCWKPIPPGCQE 628
            ++VAING+GRIGR+ LR  +   K   + +V +N+    +   HL +YD+  G F+  VK+VDN  +  D   IK++   D  +LPW E+ IDIV E TGV +D   C   I  G ++
Sbjct:    2 IRVAINGYGRIGRSILRALYESGKRQQIQIVAINELAKPEAIIHLTQYDTTHGRFQHKVKLVDNHMLIGDDA-IKILHEPDAAKLPWREMDIDIVYEATGVILDRQSCEAHIHAGAKQ 118          
BLAST of EY684352 vs. ExPASy Swiss-Prot
Match: E4PD_SHEON (D-erythrose-4-phosphate dehydrogenase OS=Shewanella oneidensis GN=epd PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.213e-15
Identity = 45/118 (38.14%), Postives = 67/118 (56.78%), Query Frame = 2
Query:  278 LKVAINGFGRIGRNFLRC-WHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPWCWKPIPPGCQE 628
            ++VAING+GRIGR+ LR  +   K   + +V +N+    +   HL +YD+  G F+  VK+VD + + +    IK+    DP +LPW EL IDIV E TG  +D   C   I  G ++
Sbjct:    2 IRVAINGYGRIGRSILRALYESGKRQQIQIVAINELAKPEAIIHLTQYDTTHGRFQPRVKLVDGQ-MQIGDDTIKIFHEPDPAKLPWRELDIDIVYEATGAILDRQSCEAHIHAGAKQ 118          
BLAST of EY684352 vs. ExPASy Swiss-Prot
Match: E4PD_SHEB2 (D-erythrose-4-phosphate dehydrogenase OS=Shewanella baltica (strain OS223) GN=epd PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.213e-15
Identity = 46/118 (38.98%), Postives = 68/118 (57.63%), Query Frame = 2
Query:  278 LKVAINGFGRIGRNFLRC-WHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPWCWKPIPPGCQE 628
            ++VAING+GRIGR+ LR  +   K   + +V +N+    +   HL +YD+  G F   VK+VD+  +  D   IK++   DP +LPW E+ IDIV E TGV +D   C   I  G ++
Sbjct:    2 IRVAINGYGRIGRSILRALYESGKRQQMQIVAINELAKPEAIIHLTQYDTTHGRFAHKVKLVDDHMLIGDDA-IKILHEPDPTKLPWHEMDIDIVYEATGVLLDRQSCEAHIHAGAKQ 118          
BLAST of EY684352 vs. ExPASy Swiss-Prot
Match: G3P_COLGL (Glyceraldehyde-3-phosphate dehydrogenase OS=Colletotrichum gloeosporioides GN=GPDA PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.584e-15
Identity = 45/105 (42.86%), Postives = 65/105 (61.90%), Query Frame = 2
Query:  269 VAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSG-GVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVF 580
            +A +KV INGFGRIGR   R  +  +   +++V VND     K A+++LKYDS  G F  ++K   N+ + ++GK +K  + RDP  +PW E G D V+E TGVF
Sbjct:    1 MAPIKVGINGFGRIGRIVFR--NAIEHPEVEIVAVNDPFIETKYAAYMLKYDSTHGIFNGEIKQEGNDLV-INGKTVKFYTERDPAAIPWKETGADYVVESTGVF 102          
BLAST of EY684352 vs. ExPASy Swiss-Prot
Match: G3P2_RHOSH (Glyceraldehyde-3-phosphate dehydrogenase B OS=Rhodobacter sphaeroides GN=gapB PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.584e-15
Identity = 47/101 (46.53%), Postives = 66/101 (65.35%), Query Frame = 2
Query:  278 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVF 580
            ++VAINGFGRIGRN LR       + ++VV +ND G V+  +HLL++DS+ G F A V   D + I V    IKV + R+P +LPWA  G+D+ +E TG+F
Sbjct:    3 IRVAINGFGRIGRNVLRAIVESGRTDIEVVAINDLGQVETNAHLLRFDSVHGRFPAKVTSGD-DWIDVGRGPIKVTAIRNPAELPWA--GVDMAMECTGIF 100          
The following BLAST results are available for this feature:
BLAST of EY684352 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 286
Match NameE-valueIdentityDescription
G3PC_TRYBB9.285e-1639.32Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
E4PD_SHESM9.285e-1638.14D-erythrose-4-phosphate dehydrogenase OS=Shewanell... [more]
E4PD_SHESA9.285e-1638.14D-erythrose-4-phosphate dehydrogenase OS=Shewanell... [more]
G3P_YARLI1.213e-1547.06Glyceraldehyde-3-phosphate dehydrogenase OS=Yarrow... [more]
E4PD_SHESW1.213e-1538.98D-erythrose-4-phosphate dehydrogenase OS=Shewanell... [more]
E4PD_SHEPC1.213e-1538.98D-erythrose-4-phosphate dehydrogenase OS=Shewanell... [more]
E4PD_SHEON1.213e-1538.14D-erythrose-4-phosphate dehydrogenase OS=Shewanell... [more]
E4PD_SHEB21.213e-1538.98D-erythrose-4-phosphate dehydrogenase OS=Shewanell... [more]
G3P_COLGL1.584e-1542.86Glyceraldehyde-3-phosphate dehydrogenase OS=Collet... [more]
G3P2_RHOSH1.584e-1546.53Glyceraldehyde-3-phosphate dehydrogenase B OS=Rhod... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-052-A09-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684352 ID=EY684352; Name=EY684352; organism=Citrus sinensis; type=EST; length=858bp
AGCAACTAAGCCACAGGCCATGGCCAGTCACTCAGCTCTTGCTCCCTCAA
GAATCCCGGCCATCACTAGGATTCCATCCAAGACTACTCACTCTTTTCCC
ACTCAATGCTCCACCAAGAGGCTGGATGTGGCTGAATTCGCTGGCCTTCG
AGCAAATGCAGGCGCGACATACGCCACTGGTGCTAGAGATGCATCCTTCT
TTGATGCTGTGACTGCTCAACTTACTCCTAAGGTTGCAGCAGGATCAGTT
CCTGTAAAGAAAGAAACCGTGGCCAAATTGAAGGTGGCAATTAATGGATT
TGGACGTATTGGCAGGAACTTCCTCCGATGCTGGCACGGCAGGAAAGACT
CACCCCTTGATGTTGTTGTTGTCAATGACAGTGGTGGTGTCAAGAATGCT
TCACACCTTCTAAAATATGACTCATTGCTTGGAACTTTTAAAGCAGACGT
GAAAATAGTGGACAACGAGACCATCTCTGTCGATGGTAAGCTCATCAAGG
TTGTCTCTAACAGGGACCCTCTCCAGCTCCCTTGGGCTGAGCTCGGAATT
GACATCGTTATTGAGGGAACAGGAGTTTTTGTGGACGGCCCCTGGTGCTG
GAAGCCCATCCCACCTGGGTGCCAAGAAAGTTATTAAACCCTGGCTCCCA
CCAAAAGGTGGCAAAATTCCAACCTATGTCCTTGGAGTTTAACGAAAAGG
ATTACCAACCCCAAGGTTGCAAAACTTTGTGAGGGGCGGGGTATTCCTGG
CAGGTTAAATAAAAAGGGCAACCCCCTTTTCCCTTTTTCTAAACCTTGGT
AACCCAATTTGGGCGTCCCCCCAACAAAGGGCTTTCCTGGCCCCCCAAAA
AATGGGTT
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