EY684191

Overview
NameEY684191
Unique NameEY684191
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length984
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY684191 vs. ExPASy Swiss-Prot
Match: TBA1A_PANTR (Tubulin alpha-1A chain OS=Pan troglodytes GN=TUBA1A PE=2 SV=1)

HSP 1 Score: 296.59 bits (758), Expect = 1.473e-79
Identity = 138/176 (78.41%), Postives = 151/176 (85.80%), Query Frame = 3 
Query:   78 MRECISVHIGQAGIQVGNACWELYCLEHGIQPDGQMPGDTTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKPGFTVYPFPQ 605
            MRECIS+H+GQAG+Q+GNACWELYCLEHGIQPDGQMP D T+GGGDD+FNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLI+GKEDAANN+ARGHYTIGKEI+DL LDRIRKLAD CTGLQGFLVF++                  VDYGKKSK  F++YP PQ
Sbjct:    1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQ 176
[Close]
BLAST of EY684191 vs. ExPASy Swiss-Prot
Match: TBA1A_MOUSE (Tubulin alpha-1A chain OS=Mus musculus GN=Tuba1a PE=1 SV=1)

HSP 1 Score: 296.59 bits (758), Expect = 1.473e-79
Identity = 138/176 (78.41%), Postives = 151/176 (85.80%), Query Frame = 3 
Query:   78 MRECISVHIGQAGIQVGNACWELYCLEHGIQPDGQMPGDTTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKPGFTVYPFPQ 605
            MRECIS+H+GQAG+Q+GNACWELYCLEHGIQPDGQMP D T+GGGDD+FNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLI+GKEDAANN+ARGHYTIGKEI+DL LDRIRKLAD CTGLQGFLVF++                  VDYGKKSK  F++YP PQ
Sbjct:    1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQ 176
[Close]
BLAST of EY684191 vs. ExPASy Swiss-Prot
Match: TBA1A_HUMAN (Tubulin alpha-1A chain OS=Homo sapiens GN=TUBA1A PE=1 SV=1)

HSP 1 Score: 296.59 bits (758), Expect = 1.473e-79
Identity = 138/176 (78.41%), Postives = 151/176 (85.80%), Query Frame = 3 
Query:   78 MRECISVHIGQAGIQVGNACWELYCLEHGIQPDGQMPGDTTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKPGFTVYPFPQ 605
            MRECIS+H+GQAG+Q+GNACWELYCLEHGIQPDGQMP D T+GGGDD+FNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLI+GKEDAANN+ARGHYTIGKEI+DL LDRIRKLAD CTGLQGFLVF++                  VDYGKKSK  F++YP PQ
Sbjct:    1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQ 176
[Close]
BLAST of EY684191 vs. ExPASy Swiss-Prot
Match: TBA1A_CRIGR (Tubulin alpha-1A chain OS=Cricetulus griseus GN=TUBA1A PE=2 SV=1)

HSP 1 Score: 296.59 bits (758), Expect = 1.473e-79
Identity = 138/176 (78.41%), Postives = 151/176 (85.80%), Query Frame = 3 
Query:   78 MRECISVHIGQAGIQVGNACWELYCLEHGIQPDGQMPGDTTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKPGFTVYPFPQ 605
            MRECIS+H+GQAG+Q+GNACWELYCLEHGIQPDGQMP D T+GGGDD+FNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLI+GKEDAANN+ARGHYTIGKEI+DL LDRIRKLAD CTGLQGFLVF++                  VDYGKKSK  F++YP PQ
Sbjct:    1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQ 176
[Close]
BLAST of EY684191 vs. ExPASy Swiss-Prot
Match: TBA_XENLA (Tubulin alpha chain OS=Xenopus laevis GN=tuba PE=2 SV=2)

HSP 1 Score: 296.204 bits (757), Expect = 1.924e-79
Identity = 138/176 (78.41%), Postives = 150/176 (85.23%), Query Frame = 3 
Query:   78 MRECISVHIGQAGIQVGNACWELYCLEHGIQPDGQMPGDTTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKPGFTVYPFPQ 605
            MRECIS+H+GQAG+Q+GNACWELYCLEHGIQPDGQMP D T+GGGDD+FNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLI+GKEDAANN+ARGHYTIGKEI+DL LDRIRKLAD CTGLQGFLVF++                  VDYGKKSK  F +YP PQ
Sbjct:    1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQ 176
[Close]
BLAST of EY684191 vs. ExPASy Swiss-Prot
Match: TBA1_DROME (Tubulin alpha-1 chain OS=Drosophila melanogaster GN=alphaTub84B PE=2 SV=1)

HSP 1 Score: 296.204 bits (757), Expect = 1.924e-79
Identity = 138/176 (78.41%), Postives = 150/176 (85.23%), Query Frame = 3 
Query:   78 MRECISVHIGQAGIQVGNACWELYCLEHGIQPDGQMPGDTTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKPGFTVYPFPQ 605
            MRECIS+H+GQAG+Q+GNACWELYCLEHGIQPDGQMP D TVGGGDD+FNTFFSETGAGKHVPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLI+GKEDAANN+ARGHYTIGKEIVDL LDRIRKLAD CTGLQGFL+F++                  VDYGKKSK  F +YP PQ
Sbjct:    1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTVGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQ 176
[Close]
BLAST of EY684191 vs. ExPASy Swiss-Prot
Match: TBA1D_BOVIN (Tubulin alpha-1D chain OS=Bos taurus GN=TUBA1D PE=1 SV=1)

HSP 1 Score: 295.819 bits (756), Expect = 2.512e-79
Identity = 137/176 (77.84%), Postives = 151/176 (85.80%), Query Frame = 3 
Query:   78 MRECISVHIGQAGIQVGNACWELYCLEHGIQPDGQMPGDTTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKPGFTVYPFPQ 605
            MRECISVH+GQAG+Q+GNACWELYCLEHGIQPDGQMP D T+GGGDD+FNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLI+GKEDAANN+ARGHYTIGKE++DL LDRIRKLAD CTGLQGFL+F++                  VDYGKKSK  F++YP PQ
Sbjct:    1 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKELIDLVLDRIRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQ 176
[Close]
BLAST of EY684191 vs. ExPASy Swiss-Prot
Match: TBA_AVESA (Tubulin alpha chain OS=Avena sativa GN=TUBA PE=2 SV=1)

HSP 1 Score: 295.049 bits (754), Expect = 4.286e-79
Identity = 142/176 (80.68%), Postives = 148/176 (84.09%), Query Frame = 3 
Query:   78 MRECISVHIGQAGIQVGNACWELYCLEHGIQPDGQMPGDTTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKPGFTVYPFPQ 605
            MRE IS+HIGQAGIQVGNACWELYCLEHGIQ DG MP DTTVG   DAFNTFFSETGAGKHVPRA+FVDLEPTVIDEVRTG YRQLFHPEQLISGKEDAANNFARGHYT+GKEIVDLCL R+R+LADNCTGLQGFLVFNAV                 VDYGKKSK GFT+YP PQ
Sbjct:    1 MREIISIHIGQAGIQVGNACWELYCLEHGIQQDGTMPSDTTVGVAHDAFNTFFSETGAGKHVPRAIFVDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLGRVRQLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQ 176
[Close]
BLAST of EY684191 vs. ExPASy Swiss-Prot
Match: TBA2_PATVU (Tubulin alpha-2/alpha-4 chain OS=Patella vulgata GN=TUB2 PE=2 SV=1)

HSP 1 Score: 295.049 bits (754), Expect = 4.286e-79
Identity = 137/176 (77.84%), Postives = 150/176 (85.23%), Query Frame = 3 
Query:   78 MRECISVHIGQAGIQVGNACWELYCLEHGIQPDGQMPGDTTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKPGFTVYPFPQ 605
            MRECISVHIGQAG+Q+GNACWELYCLEHGIQPDGQMP D T+GGGDD+FNTFFSETGAGKHVPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLI+GKEDAANN+ARGHYT+GKEI+DL LDRIRKLAD CTGLQGFL+F++                  VDYGKKSK  F +YP PQ
Sbjct:    1 MRECISVHIGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTVGKEIIDLVLDRIRKLADQCTGLQGFLIFHSFGGGTGSGFSSLLMERLSVDYGKKSKLEFAIYPAPQ 176
[Close]
BLAST of EY684191 vs. ExPASy Swiss-Prot
Match: TBA13_NAEGR (Tubulin alpha-13 chain OS=Naegleria gruberi GN=TUBA13 PE=2 SV=1)

HSP 1 Score: 295.049 bits (754), Expect = 4.286e-79
Identity = 141/176 (80.11%), Postives = 150/176 (85.23%), Query Frame = 3 
Query:   78 MRECISVHIGQAGIQVGNACWELYCLEHGIQPDGQMPGDTTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKPGFTVYPFPQ 605
            MRE IS+HIGQAG+QVGNACWELYCLEHGIQPDG MP   T+G  DDAFNTFFSETGAGKHVPRAVF+DLEPTV+DEVRTGTYRQLFHPEQLI+GKEDAANN+ARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVF++V                 VDYGKKSK GFTVYP PQ
Sbjct:    1 MREVISIHIGQAGVQVGNACWELYCLEHGIQPDGLMPSSKTIGVEDDAFNTFFSETGAGKHVPRAVFLDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFSSVGGGTGSGLGALLLERLSVDYGKKSKLGFTVYPSPQ 176
The following BLAST results are available for this feature:
BLAST of EY684191 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 408
Match NameE-valueIdentityDescription
TBA1A_PANTR1.473e-7978.41Tubulin alpha-1A chain OS=Pan troglodytes GN=TUBA1... [more]
TBA1A_MOUSE1.473e-7978.41Tubulin alpha-1A chain OS=Mus musculus GN=Tuba1a P... [more]
TBA1A_HUMAN1.473e-7978.41Tubulin alpha-1A chain OS=Homo sapiens GN=TUBA1A P... [more]
TBA1A_CRIGR1.473e-7978.41Tubulin alpha-1A chain OS=Cricetulus griseus GN=TU... [more]
TBA_XENLA1.924e-7978.41Tubulin alpha chain OS=Xenopus laevis GN=tuba PE=2... [more]
TBA1_DROME1.924e-7978.41Tubulin alpha-1 chain OS=Drosophila melanogaster G... [more]
TBA1D_BOVIN2.512e-7977.84Tubulin alpha-1D chain OS=Bos taurus GN=TUBA1D PE=... [more]
TBA_AVESA4.286e-7980.68Tubulin alpha chain OS=Avena sativa GN=TUBA PE=2 S... [more]
TBA2_PATVU4.286e-7977.84Tubulin alpha-2/alpha-4 chain OS=Patella vulgata G... [more]
TBA13_NAEGR4.286e-7980.11Tubulin alpha-13 chain OS=Naegleria gruberi GN=TUB... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-054-B07-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684191 ID=EY684191; Name=EY684191; organism=Citrus sinensis; type=EST; length=984bp
AAACGCCGGTATTGCGAAATCCCTCTAAGAATTGTTGTTATAGCTTTCAA
TTCAAATTCAAGAATCGATCTTGGAAAATGAGAGAGTGCATTAGCGTTCA
CATCGGTCAGGCCGGTATCCAGGTCGGAAATGCATGCTGGGAACTTTACT
GCCTCGAGCATGGCATTCAGCCTGATGGCCAGATGCCGGGTGATACGACC
GTAGGCGGAGGAGATGATGCCTTCAACACCTTTTTCAGTGAAACTGGTGC
AGGGAAGCATGTTCCTCGTGCTGTTTTTGTTGATCTGGAGCCCACTGTTA
TTGATGAAGTTAGGACTGGAACTTACCGCCAACTCTTCCATCCTGAACAA
CTCATCAGCGGCAAGGAAGATGCTGCCAACAATTTTGCTCGTGGCCACTA
CACAATTGGGAAGGAGATTGTTGATCTATGCTTGGACCGGATCAGAAAAC
TTGCTGATAATTGCACTGGGCTACAAGGGTTCCTGGTGTTCAATGCTGTT
GGAGGTGGTACTGGCTCTGGACTTGGGTCCCTTCTCTTGGAGCGTCTCTC
TGTTGACTATGGAAAGAAATCAAAGCCTGGTTTCACTGTGTATCCCTTCC
CTCAGGGTTTCCCCATCCGTTGGGGAACCTTACAACAGTGGTTCTTTCCA
CACATTCCCTCCTTGAACACACCCAAGGTTGCTGGTGCTTCTTGAAAAAG
GAACCCATCTTAGGAATATTTGCCGGGCGCTTTCCTTGACATTTGAACCG
CCCCCATTTACACCCAATCCCCCAACCGAATGGGGCCCCCCAGGGGGAAT
CCCACCCCCCTTACCGGCCTTTTTTTGAGGGTTGAGAGGGAACCTCCTAA
ATGGGGAAGGTGGGATGAAAATTCTCCCAAACAAAATTTGGGTTTCCCTC
ATTCCCAGGAGGGGACCCTTTTTCTTGGGCGCCCCCCTCCTTTTTGGGCC
CCACCGCTATTTTATCCCCTCGGGGCTGAAGAAG
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