EY684146

Overview
NameEY684146
Unique NameEY684146
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1025
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684146 vs. ExPASy Swiss-Prot
Match: CB23_POLMU (Chlorophyll a-b binding protein type 1 member F3, chloroplastic OS=Polystichum munitum GN=CABF3 PE=3 SV=1)

HSP 1 Score: 323.939 bits (829), Expect = 9.110e-88
Identity = 156/189 (82.54%), Postives = 165/189 (87.30%), Query Frame = 2
Query:    2 DYGWDTAGLSANPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPFRELGP--------TTWPTLVNTMPG 544
            DYGWDTAGLSA+PETFAKNRELEVIH RWAMLGALGCV PELLA+NGVKFGEAVWFKAG+QIF+EGGLDYLGNPSL+HAQSILAIWACQV+LMGAVEGYR+AGGPLGEV DP+YPGGSFDPLGLADDPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP   L            W    N  PG
Sbjct:   76 DYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVTPELLAKNGVKFGEAVWFKAGSQIFAEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVEDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHLADPAVNNAWAYATNFTPG 264          
BLAST of EY684146 vs. ExPASy Swiss-Prot
Match: CB22_SOYBN (Chlorophyll a-b binding protein 2, chloroplastic OS=Glycine max GN=CAB2 PE=3 SV=1)

HSP 1 Score: 307.76 bits (787), Expect = 1.666e-87
Identity = 149/160 (93.12%), Postives = 154/160 (96.25%), Query Frame = 2
Query:   23 GLSANPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPFREL 502
            GLSA+PETFAKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSLIHAQSILAIWA QV+LMGAVEGYRIAGGPLGEVTDP+YPGGSFDPLGLADDPEA AELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP   L
Sbjct:   74 GLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEALAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENL 233          

HSP 2 Score: 37.7354 bits (86), Expect = 1.666e-87
Identity = 15/22 (68.18%), Postives = 17/22 (77.27%), Query Frame = 1
Query:  508 NHLADPGQHNAWAYATNFVPGK 573
            +HLADP  +NAWAYAT   PGK
Sbjct:  235 DHLADPVNNNAWAYATKLCPGK 256          
BLAST of EY684146 vs. ExPASy Swiss-Prot
Match: CB21_SOYBN (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 322.398 bits (825), Expect = 2.650e-87
Identity = 159/189 (84.13%), Postives = 164/189 (86.77%), Query Frame = 2
Query:    2 DYGWDTAGLSANPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPFRELGP--------TTWPTLVNTMPG 544
            DYGWDTAGLSA+PETFAKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEA WFKAG+QIFSEGGLDYLGN SLIHAQSILAIWA QV+LMGAVEGYRIAGGPLGEVTDP+YPGGSFDPL LADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP   L            W    N +PG
Sbjct:   56 DYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEASWFKAGSQIFSEGGLDYLGNQSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLALADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAEPVNNNAWAYATNFVPG 244          
BLAST of EY684146 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2)

HSP 1 Score: 322.013 bits (824), Expect = 3.462e-87
Identity = 154/189 (81.48%), Postives = 165/189 (87.30%), Query Frame = 2
Query:    2 DYGWDTAGLSANPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPFREL--------GPTTWPTLVNTMPG 544
            DYGWDTAGLSA+PETFAKNRELEVIHCRWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+LIHAQSILAIWACQVVLMG VEGYR+ GGPLGE  DP+YPGG+FDPLGLADDP+AFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP   L            W    N +PG
Sbjct:   76 DYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRVGGGPLGEGLDPIYPGGAFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADPVANNAWAYATNFVPG 264          
BLAST of EY684146 vs. ExPASy Swiss-Prot
Match: CB2_PHYPA (Chlorophyll a-b binding protein, chloroplastic OS=Physcomitrella patens PE=3 SV=1)

HSP 1 Score: 321.242 bits (822), Expect = 5.905e-87
Identity = 156/190 (82.11%), Postives = 167/190 (87.89%), Query Frame = 2
Query:    2 DYGWDTAGLSANPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPFRELGPTTWPTLVNTMPGPTPPTLSPG 571
            DYGWDTAGLS++PETFA+NRELEVIH RWAMLGALGC+ PELLA++GVKFGEAVWFKAGAQIFSEGGLDYLGNPSL+HAQSILAIWACQVVLMGAVEGYR+AGGPLGEVTDP+YPGGSFDPLGLADDP+ FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP   L       + N       PT  PG
Sbjct:   79 DYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVTDPIYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLNDHLADPVANN-AWAYAPTSPPG 267          
BLAST of EY684146 vs. ExPASy Swiss-Prot
Match: CB23_APIGR (Chlorophyll a-b binding protein, chloroplastic OS=Apium graveolens GN=LHC0 PE=1 SV=1)

HSP 1 Score: 319.316 bits (817), Expect = 2.244e-86
Identity = 154/189 (81.48%), Postives = 164/189 (86.77%), Query Frame = 2
Query:    2 DYGWDTAGLSANPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPFRELGP--------TTWPTLVNTMPG 544
            DYGWDTAGLSA+PETFAKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSIL+IWA QV+LMGAVEGYR+AGGPLGE+ DPLYPGGSFDPLGLA+DPE  AELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP   L            W    N +PG
Sbjct:   75 DYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILSIWATQVILMGAVEGYRVAGGPLGEIVDPLYPGGSFDPLGLAEDPERSAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPG 263          
BLAST of EY684146 vs. ExPASy Swiss-Prot
Match: CB21_PEA (Chlorophyll a-b binding protein AB96 (Fragment) OS=Pisum sativum GN=AB96 PE=1 SV=1)

HSP 1 Score: 319.316 bits (817), Expect = 2.244e-86
Identity = 156/189 (82.54%), Postives = 164/189 (86.77%), Query Frame = 2
Query:    2 DYGWDTAGLSANPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPFRELGP--------TTWPTLVNTMPG 544
            DYGWDTAGLSA+PETFAKNRELEVIH RWAMLGALGCVFPELL+RNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWA QV+LMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+ PEAFAELKVKE+KNGRLAMFSMFGFFV AIVTGKGP   L            W    N +PG
Sbjct:   39 DYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEVPEAFAELKVKELKNGRLAMFSMFGFFVPAIVTGKGPLENLADHLADPVNNNAWSYATNFVPG 227          
BLAST of EY684146 vs. ExPASy Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1)

HSP 1 Score: 318.931 bits (816), Expect = 2.930e-86
Identity = 152/189 (80.42%), Postives = 164/189 (86.77%), Query Frame = 2
Query:    2 DYGWDTAGLSANPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPFRELGP--------TTWPTLVNTMPG 544
            DYGWDTAGLSA+PETFA+NRELEVIHCRWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWACQVVLMG VEGYR+ GGPLGE  D +YPGG+FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP   L            W    N +PG
Sbjct:   76 DYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHINDPVANNAWAYATNFVPG 264          
BLAST of EY684146 vs. ExPASy Swiss-Prot
Match: CB21_SINAL (Chlorophyll a-b binding protein 1, chloroplastic OS=Sinapis alba GN=CAB1 PE=3 SV=1)

HSP 1 Score: 317.775 bits (813), Expect = 6.528e-86
Identity = 157/190 (82.63%), Postives = 164/190 (86.32%), Query Frame = 2
Query:    2 DYGWDTAGLSANPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG-GPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPFRELGP--------TTWPTLVNTMPG 544
            DYGWDTAGLSA+PETFA+NRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWA QV+LMGAVEGYR+AG GPLGE  D LYPGGSFDPLGLA DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP   L            W    N +PG
Sbjct:   76 DYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGEGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPG 265          
BLAST of EY684146 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1)

HSP 1 Score: 316.235 bits (809), Expect = 1.899e-85
Identity = 152/189 (80.42%), Postives = 163/189 (86.24%), Query Frame = 2
Query:    2 DYGWDTAGLSANPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPFRELGP--------TTWPTLVNTMPG 544
            DYGWDTAGLSA+PETFAKNRELEVIH RWAMLGALGC+FPELL++NGV+FGEAVWFKAGAQIFSEGGLDYLGNP+L+HAQSILAIWA QVVLMG +EGYR+ GGPLGE  DPLYPGG+FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP   L            W    N +PG
Sbjct:   75 DYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCIFPELLSKNGVQFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWATQVVLMGLIEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHIADPVANNAWAFATNFVPG 263          
The following BLAST results are available for this feature:
BLAST of EY684146 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
CB23_POLMU9.110e-8882.54Chlorophyll a-b binding protein type 1 member F3, ... [more]
CB22_SOYBN1.666e-8793.13Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_SOYBN2.650e-8784.13Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB21_GOSHI3.462e-8781.48Chlorophyll a-b binding protein 151, chloroplastic... [more]
CB2_PHYPA5.905e-8782.11Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_APIGR2.244e-8681.48Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_PEA2.244e-8682.54Chlorophyll a-b binding protein AB96 (Fragment) OS... [more]
CB24_SOLLC2.930e-8680.42Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB21_SINAL6.528e-8682.63Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB21_LEMGI1.899e-8580.42Chlorophyll a-b binding protein of LHCII type I, c... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-053-F03-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684146 ID=EY684146; Name=EY684146; organism=Citrus sinensis; type=EST; length=1025bp
CGACTACGGTTGGGACACAGCCGGGCTTTCAGCTAACCCAGAAACCTTTG
CCAAGAACCGTGAACTCGAAGTCATCCACTGCAGATGGGCCATGTTGGGA
GCTCTTGGATGCGTCTTCCCGGAGCTCTTGGCCCGCAACGGAGTCAAGTT
CGGTGAGGCCGTGTGGTTCAAGGCGGGAGCTCAGATCTTCAGCGAGGGCG
GGCTTGACTACTTGGGAAACCCAAGCTTGATCCACGCCCAGAGCATCTTG
GCCATCTGGGCTTGCCAGGTGGTCTTGATGGGAGCCGTTGAGGGTTACAG
AATTGCTGGAGGGCCGCTCGGTGAAGTGACTGACCCATTGTACCCAGGTG
GCAGCTTTGATCCATTGGGTTTGGCTGATGACCCGGAGGCTTTTGCTGAG
CTCAAGGTTAAGGAAATCAAGAATGGAAGGTTGGCTATGTTCTCCATGTT
TGGTTTCTTCGTTCAGGCCATTGTCACCGGCAAGGGACCGTTTAGAGAAC
TTGGCCCAACCACTTGGCCGACCCTGGTCAACACAATGCCTGGGCCTACG
CCACCAACTTTGTCCCCGGGAAAGGGGAGCTTCGGGTTGAATAACATTAG
TAACCTGGGAAATTGGAATTGAATATGGTTGGGTATTTGGAGGGGACCCT
ATTTCAACTTTGGAAAAAATGGTGAATTATTGAAATGGGACTGGGAACTA
ACCTTTTGAAGGGGGATTTGTATTTCCTTTCTGATAAAATTTAAAAATAA
GGGTGCGGCCTTTCCTATCGGATCCCGCTTTTTATTGTAGGCCTACGAAG
CACAAACAACTCAGATCCATCCTAGAAGCGGGTCCCCGAATTCTGCACAT
TTACAGGAGGGCCGGTTTATTCTATAATTAGACACGAAGAGCAGGAAAAA
AACAACGATGGGGCTAACATCGCCACCTATTGTTTTTTTTCGAATTATGG
GCTCTGCAATCACTCTCCTCCTTTTTACGCCAATGTCGTGTTGGCTAGCG
TGATAGACATGGGAACAGATAATAG
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