EY684123

Overview
NameEY684123
Unique NameEY684123
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length996
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684123 vs. ExPASy Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1)

HSP 1 Score: 291.582 bits (745), Expect = 4.851e-78
Identity = 157/236 (66.53%), Postives = 179/236 (75.85%), Query Frame = 1
Query:   19 SSFVGKAVNLAPSGNELSNG------GRISMRKTASKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPL*PRWQL*SIWVWLMTPKLFAKLTGKGKSRWERLAMFPMVGFSSFRAIVTGPG 708
            S+FVG+AV    S NE          GRI+MR+T   +  S   WYG DR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHCRWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWACQVVLMG VEGYR+ GGPLGE  D + P      + +    P+ FA+L  K + +  RLAMF M GF   +AIVTG G
Sbjct:    9 SAFVGQAVG--KSQNEFIRKVGNFGEGRITMRRTVKSAPQS--IWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYRVGGGPLGEGLDKIYPGGAFDPLGL-ADDPEAFAELKVK-EIKNGRLAMFSMFGF-FVQAIVTGKG 237          
BLAST of EY684123 vs. ExPASy Swiss-Prot
Match: CB21_SILPR (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Silene pratensis PE=2 SV=2)

HSP 1 Score: 290.041 bits (741), Expect = 7.781e-78
Identity = 144/185 (77.84%), Postives = 156/185 (84.32%), Query Frame = 1
Query:   19 SSFVGKAVNLAPSGNEL-----SNGGRISMRKTASKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPL*P 558
            S+F G+ + L P  NEL      NGGR+SMR+T   +  S   WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA+NGVKFGEAVWFKAG+QIF EGGLDYLGNP+L+HAQSILAIWACQVVLMGAVEGYR+ GGPLGE  D L P
Sbjct:    9 SAFAGQTL-LKPQ-NELVRKVGGNGGRVSMRRTIKSAPES--IWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGVKFGEAVWFKAGSQIFQEGGLDYLGNPNLVHAQSILAIWACQVVLMGAVEGYRVGGGPLGEGLDQLYP 189          

HSP 2 Score: 23.0978 bits (48), Expect = 7.781e-78
Identity = 9/10 (90.00%), Postives = 10/10 (100.00%), Query Frame = 3
Query:  579 LGLADDPEAF 608
            LGLA+DPEAF
Sbjct:  196 LGLAEDPEAF 205          
BLAST of EY684123 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 4.107e-77
Identity = 156/236 (66.10%), Postives = 179/236 (75.85%), Query Frame = 1
Query:   16 SSSFVGKAVNLAPSGNEL-----SNGGRISMRKTASKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPL*PRWQL*SIWVWLMTPKLFAKLTGKGKSRWERLAMFPMVGFSSFRAIVTGPG 708
            ++SF+G A    P  +EL      +GGRI+MR+T   +  S   WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPE+L++NGVKFGEAVWFKAGAQIFSEGGLDYLGNP+L+HAQSILAIWA QVVLMG VEGYR+ GGPLGE  D + P      + +    P  FA+L  K + +  RLAMF M GF   +AIVTG G
Sbjct:    9 TTSFLGTA----PRRDELVRRVGDSGGRITMRRTVKSAPQS--IWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRVGGGPLGEGLDKVYPGGAFDPLGL-ADDPDTFAELKVK-ELKNGRLAMFSMFGF-FVQAIVTGKG 235          
BLAST of EY684123 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 4.107e-77
Identity = 156/236 (66.10%), Postives = 179/236 (75.85%), Query Frame = 1
Query:   16 SSSFVGKAVNLAPSGNEL-----SNGGRISMRKTASKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPL*PRWQL*SIWVWLMTPKLFAKLTGKGKSRWERLAMFPMVGFSSFRAIVTGPG 708
            ++SF+G A    P  +EL      +GGRI+MR+T   +  S   WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPE+L++NGVKFGEAVWFKAGAQIFSEGGLDYLGNP+L+HAQSILAIWA QVVLMG VEGYR+ GGPLGE  D + P      + +    P  FA+L  K + +  RLAMF M GF   +AIVTG G
Sbjct:    9 TTSFLGTA----PRRDELVRRVGDSGGRITMRRTVKSAPQS--IWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRVGGGPLGEGLDKVYPGGAFDPLGL-ADDPDTFAELKVK-ELKNGRLAMFSMFGF-FVQAIVTGKG 235          
BLAST of EY684123 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1)

HSP 1 Score: 287.73 bits (735), Expect = 7.005e-77
Identity = 154/236 (65.25%), Postives = 177/236 (75.00%), Query Frame = 1
Query:   19 SSFVGKAVNLAPSGNELS------NGGRISMRKTASKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPL*PRWQL*SIWVWLMTPKLFAKLTGKGKSRWERLAMFPMVGFSSFRAIVTGPG 708
            S+F G+      S NEL       NGGR +MR+T   +  S   WYG DR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHCRWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+LIHAQSILA+WA QVVLMG +EGYR+ GGPLGE  D + P      + +    P+ FA+L  K + +  RLAMF M GF   +AIVTG G
Sbjct:    9 SAFAGQTA--LKSQNELVRKIGSFNGGRATMRRTVKSAPQS--IWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAVWASQVVLMGLIEGYRVGGGPLGEGLDKIYPGGAFDPLGL-ADDPEAFAELKVK-EIKNGRLAMFSMFGF-FVQAIVTGKG 237          
BLAST of EY684123 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1)

HSP 1 Score: 287.73 bits (735), Expect = 7.005e-77
Identity = 157/236 (66.53%), Postives = 176/236 (74.58%), Query Frame = 1
Query:   16 SSSFVGKAVNLAPSGNEL-----SNGGRISMRKTASKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPL*PRWQL*SIWVWLMTPKLFAKLTGKGKSRWERLAMFPMVGFSSFRAIVTGPG 708
            SSS  G+ + L P  NEL     +   RI+MR+T   +  S   WYGPDR KYLGPFS   PSYLTGEFPGDYGWDTA +SADPETFAKNRELEVIHCRWAMLGALGCVFPELLA+NG+KFGEAVWFKAGAQIFSEGGLDY GNP+LIHAQSILAIWACQVVLMG +EGYR+ GG LGE  DPL P      + +    P+  A+L  K + +  RLAMF M GF   +AIVTG G
Sbjct:    9 SSSLAGQTL-LRPQQNELVKKVGTAQARITMRRTVRSAPES--IWYGPDRPKYLGPFSEGTPSYLTGEFPGDYGWDTAAVSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGLKFGEAVWFKAGAQIFSEGGLDYAGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGTLGEGLDPLLPGGAFDPLGL-ADDPEACAELKVK-EIKNGRLAMFSMFGF-FVQAIVTGKG 238          
BLAST of EY684123 vs. ExPASy Swiss-Prot
Match: CB25_SOLLC (Chlorophyll a-b binding protein 5, chloroplastic (Fragment) OS=Solanum lycopersicum GN=CAB5 PE=2 SV=1)

HSP 1 Score: 284.648 bits (727), Expect = 5.930e-76
Identity = 147/211 (69.67%), Postives = 167/211 (79.15%), Query Frame = 1
Query:   76 GGRISMRKTASKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPL*PRWQL*SIWVWLMTPKLFAKLTGKGKSRWERLAMFPMVGFSSFRAIVTGPG 708
            GGR++MR+T   +  S   WYG DR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHCRWAMLGALGCVFPE+L++NGV FGEAVWFKAG+QIFSEGGLDYLGNP+LIHAQSILAIWA QVVLMG VEGYR+ GGPLGE  D + P      + +    P+ FA+L  K + +  RLAMF M GF   +AIVTG G
Sbjct:    4 GGRVTMRRTVKSAPQS--IWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVTFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWASQVVLMGFVEGYRVGGGPLGEGLDKIYPGGAFDPLGL-ADDPEAFAELKVK-EIKNGRLAMFSMFGF-FVQAIVTGKG 209          
BLAST of EY684123 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1)

HSP 1 Score: 283.878 bits (725), Expect = 1.012e-75
Identity = 154/236 (65.25%), Postives = 175/236 (74.15%), Query Frame = 1
Query:   19 SSFVGKAVNLAPSGNELSN------GGRISMRKTASKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPL*PRWQL*SIWVWLMTPKLFAKLTGKGKSRWERLAMFPMVGFSSFRAIVTGPG 708
            S+F G+      S NEL        GGR +MR+T   +  S   WYG DR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHCRWAMLGALGCVFPE+L++NGV FGEAVWFKAG+QIFSEGGLDYLGNP+LIHAQSILAIWA QVVLMG VEGYR+ GGPLGE  D + P      + +    P+ FA+L  K + +  RLAMF M GF   +AIVTG G
Sbjct:    9 SAFAGQTA--LKSQNELVRKIGSFGGGRATMRRTVKSAPQS--IWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVTFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAAQVVLMGFVEGYRVGGGPLGEGLDKIYPGGAFDPLGL-ADDPEAFAELKVK-EIKNGRLAMFSMFGF-FVQAIVTGKG 237          
BLAST of EY684123 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1)

HSP 1 Score: 283.493 bits (724), Expect = 1.321e-75
Identity = 149/210 (70.95%), Postives = 168/210 (80.00%), Query Frame = 1
Query:   79 GRISMRKTASKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPL*PRWQL*SIWVWLMTPKLFAKLTGKGKSRWERLAMFPMVGFSSFRAIVTGPG 708
            GR SMR+T  K+V   S WYG DR K+LGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGC+FPELL++NGV+FGEAVWFKAGAQIFSEGGLDYLGNP+L+HAQSILAIWA QVVLMG +EGYR+ GGPLGE  DPL P      + +    P+ FA+L  K + +  RLAMF M GF   +AIVTG G
Sbjct:   32 GRFSMRRTV-KAVPQ-SIWYGADRPKFLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCIFPELLSKNGVQFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWATQVVLMGLIEGYRVGGGPLGEGLDPLYPGGAFDPLGL-ADDPEAFAELKVK-EIKNGRLAMFSMFGF-FVQAIVTGKG 236          
BLAST of EY684123 vs. ExPASy Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1)

HSP 1 Score: 280.026 bits (715), Expect = 1.461e-74
Identity = 156/236 (66.10%), Postives = 173/236 (73.31%), Query Frame = 1
Query:   19 SSFVGKAVNLAPSGNEL----SNGG--RISMRKTASKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPL*PRWQL*SIWVWLMTPKLFAKLTGKGKSRWERLAMFPMVGFSSFRAIVTGPG 708
            S+F GK       GNE      N G  R +MR+T   +  S   WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGC FPELL +NGVKFGEAVWFKAG+QIF+EGGLDYLGNP+LIHAQSILAIWA QVVLMG VEGYR+ GGPLGE  DPL P      + +    P  FA+L  K + +  RLAMF M GF   +AIVTG G
Sbjct:    9 SAFTGKTG--LRQGNEFIRKRGNFGQARFTMRRTVKSAPES--IWYGPDRPKYLGPFSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPELLEKNGVKFGEAVWFKAGSQIFAEGGLDYLGNPNLIHAQSILAIWATQVVLMGFVEGYRVGGGPLGEGLDPLYPGGAFDPLGL-ADDPDSFAELKVK-ELKNGRLAMFSMFGF-FVQAIVTGKG 237          
The following BLAST results are available for this feature:
BLAST of EY684123 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
CB24_SOLLC4.851e-7866.53Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB21_SILPR7.781e-7877.84Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB23_ORYSJ4.107e-7766.10Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_ORYSI4.107e-7766.10Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_TOBAC7.005e-7765.25Chlorophyll a-b binding protein 36, chloroplastic ... [more]
CB21_PINTH7.005e-7766.53Chlorophyll a-b binding protein type I, chloroplas... [more]
CB25_SOLLC5.930e-7669.67Chlorophyll a-b binding protein 5, chloroplastic (... [more]
CB26_PETSP1.012e-7565.25Chlorophyll a-b binding protein 37, chloroplastic ... [more]
CB21_LEMGI1.321e-7570.95Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB215_PEA1.461e-7466.10Chlorophyll a-b binding protein 215, chloroplastic... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-053-D03-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684123 ID=EY684123; Name=EY684123; organism=Citrus sinensis; type=EST; length=996bp
CTCACAATGGCTCTCTCCTCATCATTCGTCGGCAAGGCCGTGAACCTCGC
CCCTTCAGGCAATGAGCTAAGCAATGGTGGCCGCATCTCCATGCGTAAAA
CCGCGAGCAAGTCTGTTTCTTCAGGTAGCCCGTGGTACGGCCCAGACAGA
GTCAAGTACTTGGGCCCATTCTCTGGCGAGCCCCCAAGCTACTTGACCGG
TGAGTTCCCTGGCGACTACGGTTGGGACACAGCCGGGCTTTCAGCTGACC
CAGAAACCTTTGCCAAGAACCGTGAACTCGAAGTCATCCACTGCAGATGG
GCCATGTTGGGAGCTCTTGGATGCGTCTTCCCGGAGCTCTTGGCCCGCAA
CGGAGTCAAGTTCGGTGAGGCCGTGTGGTTCAAGGCGGGAGCCCAGATCT
TCAGCGAGGGCGGGCTAGACTACTTGGGAAACCCAAGCTTGATCCACGCC
CAGAGCATCTTGGCCATCTGGGCTTGCCAGGTGGTCTTGATGGGAGCCGT
TGAGGGTTACAGAATTGCTGGAGGGCCGCTCGGTGAAGTGACTGACCCAT
TGTAACCCAGGTGGCAGCTTTGATCCATTTGGGTTTGGCTGATGACCCCG
AAGCTTTTTGCTAAACTCACAGGTAAAGGGAAATCAAGATGGGAAAGGTT
GGCTATGTTCCCCATGGTTGGGTTTTCTTCCTTCCGGGCCATTGTCACCG
GGCCAGGGAACTGTTAGAAAACTTGGGCCAAACTTTTGGTCGAACCCTGG
TGAAACAAAAATAGCCGGGGGCCCTAAAACCCGAAATTTTTAGGCCCGGA
AAATTGGGGTTTTGGCTATAAGTGTTTATGATAAACTGGGGAAATTTTAT
TGTTCAAGAACGATTTTGGATAAATAAGGTGTGAAACTCATATCAACCTT
ATTGACAAAAAAAAATTCGAAAAATGAAAAAGGGGCTAGAGAATACACCG
ACAAAATGTAAAAAAGGGATATATTAGATATATTTGTATGCTACCG
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