EY684107 | Citrus Genome Database

Overview


Name	EY684107
Unique Name	EY684107
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	1078

Libraries


Library Name	Type
Sweet orange leaf, young greenhouse plant	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of EY684107 vs. ExPASy Swiss-Prot
Match: CB21_SINAL (Chlorophyll a-b binding protein 1, chloroplastic OS=Sinapis alba GN=CAB1 PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.301e-49
Identity = 81/121 (66.94%), Postives = 94/121 (77.69%), Query Frame = 2

Query:   56 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVK-SAPQ-SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK 412
            +T A+   AFAG+ A++ S       G    GR+TMR+TVK + P  S WYG DR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPE+L++
Sbjct:    4 STMALSSPAFAGK-AVKLSPGASEVFGT---GRVTMRKTVKPTGPSGSPWYGSDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPELLAR 120

HSP 2 Score: 62.7734 bits (151), Expect = 1.301e-49
Identity = 27/30 (90.00%), Postives = 29/30 (96.67%), Query Frame = 3

Query:  411 KNGVKFGEAVWFKAGAQIFSEGGLDYLGKP 500
            +NGVKFGEAVWFKAG+QIFSEGGLDYLG P
Sbjct:  120 RNGVKFGEAVWFKAGSQIFSEGGLDYLGNP 149

[Close]

BLAST of EY684107 vs. ExPASy Swiss-Prot
Match: CB25_NICPL (Chlorophyll a-b binding protein E, chloroplastic OS=Nicotiana plumbaginifolia GN=CABE PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 1.695e-49
Identity = 79/123 (64.23%), Postives = 92/123 (74.80%), Query Frame = 2

Query:   56 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQ----SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK 412
            A++    S FAG+ A++ S       G    G++TMR+T   A      S WYGPDR KYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+L++
Sbjct:    3 ASTTALSSPFAGK-AVKLSPSSSEVTG---NGKVTMRKTANKAKPVSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 121

HSP 2 Score: 62.7734 bits (151), Expect = 1.695e-49
Identity = 27/30 (90.00%), Postives = 29/30 (96.67%), Query Frame = 3

Query:  411 KNGVKFGEAVWFKAGAQIFSEGGLDYLGKP 500
            +NGVKFGEAVWFKAG+QIFSEGGLDYLG P
Sbjct:  121 RNGVKFGEAVWFKAGSQIFSEGGLDYLGNP 150

[Close]

BLAST of EY684107 vs. ExPASy Swiss-Prot
Match: CB21_SOYBN (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 1.700e-49
Identity = 71/90 (78.89%), Postives = 78/90 (86.67%), Query Frame = 2

Query:  149 GRITMRRTVKSAPQS--IWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK 412
            GR++MR+T      S   WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE+L++
Sbjct:   11 GRVSMRKTASKTVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAR 100

HSP 2 Score: 57.7658 bits (138), Expect = 1.700e-49
Identity = 25/28 (89.29%), Postives = 27/28 (96.43%), Query Frame = 3

Query:  411 KNGVKFGEAVWFKAGAQIFSEGGLDYLG 494
            +NGVKFGEA WFKAG+QIFSEGGLDYLG
Sbjct:  100 RNGVKFGEASWFKAGSQIFSEGGLDYLG 127

HSP 3 Score: 27.335 bits (59), Expect = 1.700e-49
Identity = 16/41 (39.02%), Postives = 23/41 (56.10%), Query Frame = 1

Query:  481 LTILANPNLISCSEHFWAIWALPSLCLNGFCLKGYRIVGGP 603
            L  L N +LI  ++   AIWA   + +    ++GYRI GGP
Sbjct:  123 LDYLGNQSLIH-AQSILAIWATQVILMGA--VEGYRIAGGP 160

[Close]

BLAST of EY684107 vs. ExPASy Swiss-Prot
Match: CB21_PEA (Chlorophyll a-b binding protein AB96 (Fragment) OS=Pisum sativum GN=AB96 PE=1 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 1.703e-49
Identity = 65/78 (83.33%), Postives = 72/78 (92.31%), Query Frame = 2

Query:  179 SAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK 412
            ++  S W+GPD  KYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE+LS+
Sbjct:    6 ASSSSPWHGPDGVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 83

HSP 2 Score: 62.7734 bits (151), Expect = 1.703e-49
Identity = 27/30 (90.00%), Postives = 29/30 (96.67%), Query Frame = 3

Query:  411 KNGVKFGEAVWFKAGAQIFSEGGLDYLGKP 500
            +NGVKFGEAVWFKAG+QIFSEGGLDYLG P
Sbjct:   83 RNGVKFGEAVWFKAGSQIFSEGGLDYLGNP 112

HSP 3 Score: 31.187 bits (69), Expect = 1.703e-49
Identity = 19/52 (36.54%), Postives = 30/52 (57.69%), Query Frame = 1

Query:  481 LTILANPNLISCSEHFWAIWALPSLCLNGFCLKGYRIVGGPSWWKNLTPLFP 636
            L  L NP+L+  ++   AIWA   + +    ++GYRI GGP   + + PL+P
Sbjct:  106 LDYLGNPSLVH-AQSILAIWATQVILMGA--VEGYRIAGGP-LGEVVDPLYP 153

[Close]

BLAST of EY684107 vs. ExPASy Swiss-Prot
Match: CB21_WHEAT (Chlorophyll a-b binding protein, chloroplastic OS=Triticum aestivum GN=WHAB1.6 PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 8.227e-49
Identity = 75/122 (61.48%), Postives = 88/122 (72.13%), Query Frame = 2

Query:   59 TSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQ----SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK 412
            T ++  S+FAG+      +  +  +G A   R+ MR+T   A Q    S WYG DR  YLGP S + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+L++
Sbjct:    5 TMSLSSSSFAGKAVKNLPSSAL--IGDA---RVNMRKTAAKAKQVSSSSPWYGSDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 121

HSP 2 Score: 58.9214 bits (141), Expect = 8.227e-49
Identity = 25/30 (83.33%), Postives = 28/30 (93.33%), Query Frame = 3

Query:  411 KNGVKFGEAVWFKAGAQIFSEGGLDYLGKP 500
            +NGVKFGEA WFKAG+QIFS+GGLDYLG P
Sbjct:  121 RNGVKFGEAGWFKAGSQIFSDGGLDYLGNP 150

HSP 3 Score: 31.187 bits (69), Expect = 8.227e-49
Identity = 24/67 (35.82%), Postives = 36/67 (53.73%), Query Frame = 1

Query:  481 LTILANPNLISCSEHFWAIWALPSLCLNGFCLKGYRIVGGPSWWKNLTPLFPLVGCFWTHLGLG*GP 681
            L  L NP+L+  ++   AIWA   + +    ++GYRI GGP   + + PL+P  G  +  LGL   P
Sbjct:  144 LDYLGNPSLVH-AQSLLAIWACQVVLMGA--VEGYRIAGGP-LGEIVDPLYP--GGSFDPLGLAERP 204

[Close]

BLAST of EY684107 vs. ExPASy Swiss-Prot
Match: CB22_PETSP (Chlorophyll a-b binding protein 22L, chloroplastic OS=Petunia sp. GN=CAB22L PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 8.311e-49
Identity = 77/123 (62.60%), Postives = 87/123 (70.73%), Query Frame = 2

Query:   56 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQ----SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK 412
            AT A+  S FAG+      +       +   G+ TMR+T   A      S WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+ ++
Sbjct:    4 ATMALSSSTFAGKVVKLSPSSSE----ITGNGKATMRKTATKAKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFAR 122

HSP 2 Score: 60.4622 bits (145), Expect = 8.311e-49
Identity = 26/30 (86.67%), Postives = 28/30 (93.33%), Query Frame = 3

Query:  411 KNGVKFGEAVWFKAGAQIFSEGGLDYLGKP 500
            +NGVKFGEAVW KAG+QIFSEGGLDYLG P
Sbjct:  122 RNGVKFGEAVWLKAGSQIFSEGGLDYLGNP 151

[Close]

BLAST of EY684107 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 5.203e-45
Identity = 70/97 (72.16%), Postives = 75/97 (77.32%), Query Frame = 2

Query:  122 VRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK 412
            +R +  A  GRITM          +WYGPDR KYLGPFS QTPSYL GEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGCVFPE+L K
Sbjct:   32 LRDIAAATNGRITMGN-------DLWYGPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCVFPEVLQK 121

HSP 2 Score: 53.1434 bits (126), Expect = 5.203e-45
Identity = 23/28 (82.14%), Postives = 25/28 (89.29%), Query Frame = 3

Query:  417 GVKFGEAVWFKAGAQIFSEGGLDYLGKP 500
            GV+F E VWFKAG+QIFSEGGLDYLG P
Sbjct:  124 GVEFKEPVWFKAGSQIFSEGGLDYLGNP 151

[Close]

BLAST of EY684107 vs. ExPASy Swiss-Prot
Match: CB22_SOYBN (Chlorophyll a-b binding protein 2, chloroplastic OS=Glycine max GN=CAB2 PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 3.962e-44
Identity = 71/124 (57.26%), Postives = 87/124 (70.16%), Query Frame = 2

Query:   56 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSI-----WYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK 412
            +T A+  S+ AGQ      +    ++GV   GR++MR+T   AP+++     WYGPDR KYLGPFS + PSYLTGEF G        LSADPETFAKNRELEVIHSRWAMLGALGCVFPE+L++
Sbjct:    4 STMALSSSSLAGQAMKLAPS--TPELGV---GRVSMRKT---APKTVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFHG--------LSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAR 111

HSP 2 Score: 62.7734 bits (151), Expect = 3.962e-44
Identity = 27/30 (90.00%), Postives = 29/30 (96.67%), Query Frame = 3

Query:  411 KNGVKFGEAVWFKAGAQIFSEGGLDYLGKP 500
            +NGVKFGEAVWFKAG+QIFSEGGLDYLG P
Sbjct:  111 RNGVKFGEAVWFKAGSQIFSEGGLDYLGNP 140

HSP 3 Score: 31.187 bits (69), Expect = 3.962e-44
Identity = 29/79 (36.71%), Postives = 42/79 (53.16%), Query Frame = 1

Query:  481 LTILANPNLISCSEHFWAIWALPSLCLNGFCLKGYRIVGGPSWWKNLTPLFPLVGCFWTHLGLG*GPPNQIA*I*KVKE 717
            L  L NP+LI  ++   AIWA   + +    ++GYRI GGP   +   P++P  G  +  LGL    P  +A + KVKE
Sbjct:  134 LDYLGNPSLIH-AQSILAIWATQVILMGA--VEGYRIAGGP-LGEVTDPIYP--GGSFDPLGLA-DDPEALAEL-KVKE 204

[Close]

BLAST of EY684107 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 7.351e-44
Identity = 75/124 (60.48%), Postives = 88/124 (70.97%), Query Frame = 2

Query:   56 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKEWSEI 427
            +T+ ++ + F GQT  + +N  +R V      R TM          +WYGPDR KYLGPFS QTPSYL GEFPGDYGWDTAGLSADPE FAKNR LEVIH RWAMLGALGC+FPE+L K W ++
Sbjct:   10 STTVVKATPFLGQT--KNANP-LRDVVAMGSARFTMSN-------DLWYGPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCIFPEVLEK-WVKV 122

HSP 2 Score: 48.9062 bits (115), Expect = 7.351e-44
Identity = 21/27 (77.78%), Postives = 23/27 (85.19%), Query Frame = 3

Query:  420 VKFGEAVWFKAGAQIFSEGGLDYLGKP 500
            V F E VWFKAG+QIFS+GGLDYLG P
Sbjct:  122 VDFKEPVWFKAGSQIFSDGGLDYLGNP 148

[Close]

BLAST of EY684107 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 1.205e-42
Identity = 64/90 (71.11%), Postives = 71/90 (78.89%), Query Frame = 2

Query:  140 ADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILS 409
            A G + T     KSA    WYGPDR K+LGPFS  TP+YLTGEFPGDYGWDTAGLSADPETF K RELEVIH+RWA+LGALG + PE+LS
Sbjct:   21 AAGTKQTKAAPAKSAGIE-WYGPDRAKWLGPFSTNTPAYLTGEFPGDYGWDTAGLSADPETFKKYRELEVIHARWALLGALGILTPELLS 109

HSP 2 Score: 58.9214 bits (141), Expect = 1.205e-42
Identity = 26/28 (92.86%), Postives = 26/28 (92.86%), Query Frame = 3

Query:  417 GVKFGEAVWFKAGAQIFSEGGLDYLGKP 500
            GVKFGE VWFKAGAQIFSEGGLDYLG P
Sbjct:  113 GVKFGEPVWFKAGAQIFSEGGLDYLGSP 140

HSP 3 Score: 25.0238 bits (53), Expect = 1.205e-42
Identity = 15/36 (41.67%), Postives = 22/36 (61.11%), Query Frame = 1

Query:  574 LKGYRIVGGPSWWKNLTPLFPLVGCFWTHLGLG*GP 681
            ++GYR+ GGP+  + L PL+P  G  +  LGL   P
Sbjct:  162 IEGYRVNGGPA-GEGLDPLYP--GESFDPLGLADDP 194

The following BLAST results are available for this feature:

BLAST of EY684107 vs. ExPASy Swiss-Prot

BLAST of EY684107 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61


Match Name	E-value	Identity	Description
CB21_SINAL	1.301e-49	66.94	Chlorophyll a-b binding protein 1, chloroplastic O...	[more]
CB25_NICPL	1.695e-49	64.23	Chlorophyll a-b binding protein E, chloroplastic O...	[more]
CB21_SOYBN	1.700e-49	78.89	Chlorophyll a-b binding protein, chloroplastic (Fr...	[more]
CB21_PEA	1.703e-49	83.33	Chlorophyll a-b binding protein AB96 (Fragment) OS...	[more]
CB21_WHEAT	8.227e-49	61.48	Chlorophyll a-b binding protein, chloroplastic OS=...	[more]
CB22_PETSP	8.311e-49	62.60	Chlorophyll a-b binding protein 22L, chloroplastic...	[more]
CB23_HORVU	5.203e-45	72.16	Chlorophyll a-b binding protein of LHCII type III,...	[more]
CB22_SOYBN	3.962e-44	57.26	Chlorophyll a-b binding protein 2, chloroplastic O...	[more]
CB23_SOLLC	7.351e-44	60.48	Chlorophyll a-b binding protein 13, chloroplastic ...	[more]
CB2_CHLMO	1.205e-42	71.11	Chlorophyll a-b binding protein of LHCII type I, c...	[more]

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Properties


Property Name	Value
Genbank description	CS00-C1-650-053-B08-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY684107 ID=EY684107; Name=EY684107; organism=Citrus sinensis; type=EST; length=1078bp
CCCACGCGATCCGGCTTCAGCAACAAAAGGAAAAGCTTTCGCATAAGAAC
ATATGGCAACCTCTGCTATCCAACAATCAGCATTTGCTGGCCAGACCGCC
TTGAGGCAATCCAATGAGTTTGTCCGCAAGGTTGGAGTTGCTGACGGTGG
CCGTATCACCATGAGGAGGACTGTCAAATCCGCTCCCCAGAGCATCTGGT
ACGGCCCAGACCGCCCAAAGTACTTGGGACCATTCTCTGAGCAAACACCA
TCATACTTGACTGGTGAGTTCCCTGGTGACTATGGCTGGGATACCGCTGG
TTTATCAGCAGACCCCGAGACATTTGCTAAGAACCGTGAGCTAGAGGTGA
TCCACAGCAGATGGGCAATGCTTGGAGCTCTTGGCTGCGTCTTCCCTGAA
ATCCTCTCCAAAGAATGGAGTGAAATTCGGCGAAGCAGTTTGGTTCAAGG
CTGGCGCTCAAATATTCTCTGAAGGTGGCCTTGACTATCTTGGCAAACCC
CAACCTCATTTCATGCTCAGAACATTTTTGGGCAATCTGGGCCTTGCCAA
GTTTGTGCCTTAATGGGTTTTGTTTGAAAGGATACAGAATTGTGGGCGGT
CCTTCTTGGTGGAAGAACTTGACCCCACTTTTTCCCCTGGTTGGGTGCTT
TTGGACCCACTTGGGTTTGGGTTGAGGACCCCCAAATCAAATTGCTTAAA
TTTAAAAGGTCAAGGAACCCCAAAAAATGGGGCCGTCCGGGGCATTGTAC
TCCCCAGGTTTGGGAATTCTTTTTATCCACGGCTTATAGTCCCCATGGGG
CAAGGTCCTCCATTTTGAGAAACCCTCATATAAAACCCCATTTGCCATAA
TCCTCGGGGGGGCACAACCAGATGGCCCGGGGAGCTATATATGCACTCAA
ACCATTTTTGTATTCCCCAGGGGATAAATGTAAAAAGAAACCACTTGCGG
CAGTATGGTGTGGGGGGGGGTCTTATTTTTTCATCACACCTGTGATAGAA
AATTCATTATTTACTCATTCTTCATTTTATCTAAGAATGGTGGTGGATGT
GATTTTATTGTGGAGTGGGNGAATGACA