EY684107

Overview
NameEY684107
Unique NameEY684107
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1078
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684107 vs. ExPASy Swiss-Prot
Match: CB22_CUCSA (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.671e-42
Identity = 55/61 (90.16%), Postives = 58/61 (95.08%), Query Frame = 2
Query:  230 PFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK 412
            PFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHS WAMLGALGCVFPE+LS+
Sbjct:    1 PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSTWAMLGALGCVFPELLSR 61          

HSP 2 Score: 62.7734 bits (151), Expect = 2.671e-42
Identity = 27/30 (90.00%), Postives = 29/30 (96.67%), Query Frame = 3
Query:  411 KNGVKFGEAVWFKAGAQIFSEGGLDYLGKP 500
            +NGVKFGEAVWFKAG+QIFSEGGLDYLG P
Sbjct:   61 RNGVKFGEAVWFKAGSQIFSEGGLDYLGNP 90          

HSP 3 Score: 30.0314 bits (66), Expect = 2.671e-42
Identity = 23/67 (34.33%), Postives = 35/67 (52.24%), Query Frame = 1
Query:  481 LTILANPNLISCSEHFWAIWALPSLCLNGFCLKGYRIVGGPSWWKNLTPLFPLVGCFWTHLGLG*GP 681
            L  L NP+L+  ++   AIWA   + +    ++GYRI GGP   +   P++P  G  +  LGL   P
Sbjct:   84 LDYLGNPSLVH-AQSILAIWACQVVLMGA--VEGYRIAGGP-LGEVTDPIYP--GGSFDPLGLADDP 144          
BLAST of EY684107 vs. ExPASy Swiss-Prot
Match: CB48_MAIZE (Chlorophyll a-b binding protein 48, chloroplastic OS=Zea mays GN=CAB48 PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 2.487e-41
Identity = 74/123 (60.16%), Postives = 81/123 (65.85%), Query Frame = 2
Query:   56 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTV-KSAPQ---SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK 412
            AT AI   A  G+ A    + F         GRITMR+T  K  P    S WYG DR  YLGP S   PSYLTGEFPGDYGWDT GLSADPETFAKNRELEVIH RWA+   LGCVFPE+L++
Sbjct:    4 ATMAITSRALVGKPAAGTRDVFGE-------GRITMRKTAAKPKPARSGSPWYGADRVLYLGPLSGSPPSYLTGEFPGDYGWDTEGLSADPETFAKNRELEVIHCRWAIAVGLGCVFPELLAR 119          

HSP 2 Score: 54.299 bits (129), Expect = 2.487e-41
Identity = 23/30 (76.67%), Postives = 26/30 (86.67%), Query Frame = 3
Query:  411 KNGVKFGEAVWFKAGAQIFSEGGLDYLGKP 500
            +NGVKFGE VWFKAG+QIFSEGGL + G P
Sbjct:  119 RNGVKFGEGVWFKAGSQIFSEGGLSHPGNP 148          
BLAST of EY684107 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 5.960e-40
Identity = 59/82 (71.95%), Postives = 71/82 (86.59%), Query Frame = 2
Query:  179 SAPQSI---WYGPDRPKYLGPFSEQ-TPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK 412
            +AP+S    +YGP+R K+LGP+SE  TP+YLTGEFPGDYGWDTAGLSADPETF + RELE+IH+RWAMLGALGC  PE+L+K
Sbjct:   27 AAPKSSGVEFYGPNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCQTPELLAK 108          

HSP 2 Score: 61.6178 bits (148), Expect = 5.960e-40
Identity = 27/30 (90.00%), Postives = 28/30 (93.33%), Query Frame = 3
Query:  411 KNGVKFGEAVWFKAGAQIFSEGGLDYLGKP 500
            K+G KFGEAVWFKAGAQIFSEGGLDYLG P
Sbjct:  108 KSGTKFGEAVWFKAGAQIFSEGGLDYLGNP 137          
BLAST of EY684107 vs. ExPASy Swiss-Prot
Match: CB23_NICPL (Chlorophyll a-b binding protein C, chloroplastic OS=Nicotiana plumbaginifolia GN=CABC PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 4.194e-38
Identity = 94/177 (53.11%), Postives = 115/177 (64.97%), Query Frame = 2
Query:   56 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAP----QSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKEWSEIRRSSLVQGWRSNIL*RWP*LSWQTPTSFHAQNIFGQSGPCQVCALMGFV 574
            +T A+  S+FAG+ A++ S       G    G++TMR+T   A      S WYGP+R KYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+L++   +   +   +G  S I  +        P+  HAQ+I      CQV  LMG V
Sbjct:    4 STMALSSSSFAGK-AVKLSPSSSEITG---NGKVTMRKTASKAKPVSSSSPWYGPNRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKG-GSQIFSQGGLDYLGNPSLVHAQSILA-IWACQV-VLMGAV 173          
BLAST of EY684107 vs. ExPASy Swiss-Prot
Match: CB2_MALDO (Chlorophyll a-b binding protein AB10, chloroplastic OS=Malus domestica PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.277e-36
Identity = 56/66 (84.85%), Postives = 59/66 (89.39%), Query Frame = 2
Query:  212 RPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILS 409
            R KYLGPFS + PSYLTGEFPGDYGWDTAGLSA PETFAKNRELEVIHSR AM  ALGC+FPE+LS
Sbjct:   58 RVKYLGPFSGEWPSYLTGEFPGDYGWDTAGLSAYPETFAKNRELEVIHSRCAMSAALGCIFPELLS 123          

HSP 2 Score: 55.8398 bits (133), Expect = 1.277e-36
Identity = 25/28 (89.29%), Postives = 25/28 (89.29%), Query Frame = 3
Query:  417 GVKFGEAVWFKAGAQIFSEGGLDYLGKP 500
            G  FGEAVWFKAGAQIFSEGGLDYLG P
Sbjct:  126 GQGFGEAVWFKAGAQIFSEGGLDYLGNP 153          
BLAST of EY684107 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 1.666e-36
Identity = 58/90 (64.44%), Postives = 75/90 (83.33%), Query Frame = 2
Query:  152 RITMRRTVKSAPQSI--WYGPDRPKYLGPFSEQ-TPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK 412
            R T ++ + + P++   +YGPDR K+LGPFSE  TP YLTGEFPGDYGWDTAGLSADP+TFA+ RE+E+IH+RWA+LGALG + PE+LS+
Sbjct:   16 RQTRQQRMATVPRAAVEFYGPDRAKFLGPFSENDTPEYLTGEFPGDYGWDTAGLSADPQTFARYREIELIHARWALLGALGILTPELLSQ 105          

HSP 2 Score: 50.447 bits (119), Expect = 1.666e-36
Identity = 21/26 (80.77%), Postives = 25/26 (96.15%), Query Frame = 3
Query:  417 GVKFGEAVWFKAGAQIFSEGGLDYLG 494
            GV+FGE VWFKAGAQIF++GGL+YLG
Sbjct:  108 GVQFGEPVWFKAGAQIFADGGLNYLG 133          
BLAST of EY684107 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 6.696e-36
Identity = 108/240 (45.00%), Postives = 129/240 (53.75%), Query Frame = 2
Query:   53 MATSAIQQSAFAGQTALRQSNEFVRKVGVADG----GRITMRRTVK-----SAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKE--------WSEIRRSSLVQGWRSNIL*RWP*LSWQTPTSFHAQNIFGQSGPCQVCALMGFV*KDTELWAVLLGGRT*PHFFPWLGAFGPTWVWVEDPQ-IKLLKFKRSRN 718
            MA+  I   AFAG           + +GV  G     R+TMR+        SA  S WYGPDR  YLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FAKNRELEVIH RWAMLGALGCVFPE+L++         W +       +G    +           P+  HAQ+I      CQV  LMG V +   +    LG  T P  +P  G+F P  +  EDP+    LK K  +N
Sbjct:    1 MASCGIGSCAFAGGQISSLKPHTNQLLGVGAGVHGEARVTMRKATTKKLTASASTSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPENFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYL---------GNPSLVHAQSILA-IWACQV-ILMGAV-EGYRIAGGPLGEVTDP-IYPG-GSFDPLGL-AEDPEAFAELKVKEIKN 225          
BLAST of EY684107 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.904e-26
Identity = 46/79 (58.23%), Postives = 55/79 (69.62%), Query Frame = 2
Query:  179 SAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKE 415
            S+  + +YGPD          Q P   TGEFPGDYGWDTAGLSADPETF + RELE+IH+R  +LGALG V PE+L+ E
Sbjct:   51 SSSANQFYGPDATSGWD-LQHQHPRLPTGEFPGDYGWDTAGLSADPETFKRYRELELIHARCGLLGALGMVTPELLADE 128          

HSP 2 Score: 48.1358 bits (113), Expect = 5.904e-26
Identity = 20/31 (64.52%), Postives = 27/31 (87.10%), Query Frame = 3
Query:  411 KNGVKFGEA-VWFKAGAQIFSEGGLDYLGKP 500
            ++G+KFG+A +WFKAGA IF +GGL+YLG P
Sbjct:  128 EDGIKFGDAAIWFKAGAAIFQDGGLNYLGNP 158          
BLAST of EY684107 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 9.962e-18
Identity = 39/75 (52.00%), Postives = 47/75 (62.67%), Query Frame = 2
Query:  197 WYGPDRPKYLGPF---SEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK 412
            WYGPDR  +L        + P YL GE  GDYG+D  GL   PE FAK +  E+IH+RWAMLGA G + PE L+K
Sbjct:   62 WYGPDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWAMLGAAGFIIPEALNK 136          

HSP 2 Score: 30.4166 bits (67), Expect = 9.962e-18
Identity = 16/33 (48.48%), Postives = 18/33 (54.55%), Query Frame = 3
Query:  411 KNGVKFG-EAVWFKAGAQIFSEGGLDYLGKPQP 506
            K G   G EAVWFK GA +     L+Y GK  P
Sbjct:  136 KYGANCGPEAVWFKTGALLLDGNTLNYFGKNIP 168          
BLAST of EY684107 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 2.317e-12
Identity = 44/113 (38.94%), Postives = 62/113 (54.87%), Query Frame = 2
Query:   74 QSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK 412
            +++F G   LR S +F+  VG          R+V  A  ++   PDRP +        P +L G  PGD+G+D  GL +DPE+   N + E++HSRWAMLGA G   PE L+K
Sbjct:   31 KASFLGGKRLRVS-KFIAPVG---------SRSV--AVSAVAADPDRPLWFP--GSTPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTK 129          
The following BLAST results are available for this feature:
BLAST of EY684107 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
CB22_CUCSA2.671e-4290.16Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB48_MAIZE2.487e-4160.16Chlorophyll a-b binding protein 48, chloroplastic ... [more]
CB2_CHLRE5.960e-4071.95Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB23_NICPL4.194e-3853.11Chlorophyll a-b binding protein C, chloroplastic O... [more]
CB2_MALDO1.277e-3684.85Chlorophyll a-b binding protein AB10, chloroplasti... [more]
CB2_DUNTE1.666e-3664.44Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2B_PINSY6.696e-3645.00Chlorophyll a-b binding protein type 2 member 1B, ... [more]
CB2_DUNSA5.904e-2658.23Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB26_ARATH9.962e-1852.00Chlorophyll a-b binding protein CP26, chloroplasti... [more]
CB12_PETHY2.317e-1238.94Chlorophyll a-b binding protein, chloroplastic OS=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-650-053-B08-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684107 ID=EY684107; Name=EY684107; organism=Citrus sinensis; type=EST; length=1078bp
CCCACGCGATCCGGCTTCAGCAACAAAAGGAAAAGCTTTCGCATAAGAAC
ATATGGCAACCTCTGCTATCCAACAATCAGCATTTGCTGGCCAGACCGCC
TTGAGGCAATCCAATGAGTTTGTCCGCAAGGTTGGAGTTGCTGACGGTGG
CCGTATCACCATGAGGAGGACTGTCAAATCCGCTCCCCAGAGCATCTGGT
ACGGCCCAGACCGCCCAAAGTACTTGGGACCATTCTCTGAGCAAACACCA
TCATACTTGACTGGTGAGTTCCCTGGTGACTATGGCTGGGATACCGCTGG
TTTATCAGCAGACCCCGAGACATTTGCTAAGAACCGTGAGCTAGAGGTGA
TCCACAGCAGATGGGCAATGCTTGGAGCTCTTGGCTGCGTCTTCCCTGAA
ATCCTCTCCAAAGAATGGAGTGAAATTCGGCGAAGCAGTTTGGTTCAAGG
CTGGCGCTCAAATATTCTCTGAAGGTGGCCTTGACTATCTTGGCAAACCC
CAACCTCATTTCATGCTCAGAACATTTTTGGGCAATCTGGGCCTTGCCAA
GTTTGTGCCTTAATGGGTTTTGTTTGAAAGGATACAGAATTGTGGGCGGT
CCTTCTTGGTGGAAGAACTTGACCCCACTTTTTCCCCTGGTTGGGTGCTT
TTGGACCCACTTGGGTTTGGGTTGAGGACCCCCAAATCAAATTGCTTAAA
TTTAAAAGGTCAAGGAACCCCAAAAAATGGGGCCGTCCGGGGCATTGTAC
TCCCCAGGTTTGGGAATTCTTTTTATCCACGGCTTATAGTCCCCATGGGG
CAAGGTCCTCCATTTTGAGAAACCCTCATATAAAACCCCATTTGCCATAA
TCCTCGGGGGGGCACAACCAGATGGCCCGGGGAGCTATATATGCACTCAA
ACCATTTTTGTATTCCCCAGGGGATAAATGTAAAAAGAAACCACTTGCGG
CAGTATGGTGTGGGGGGGGGTCTTATTTTTTCATCACACCTGTGATAGAA
AATTCATTATTTACTCATTCTTCATTTTATCTAAGAATGGTGGTGGATGT
GATTTTATTGTGGAGTGGGNGAATGACA
back to top