EY684107
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EY684107 vs. ExPASy Swiss-Prot
Match: CB22_CUCSA (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Cucumis sativus PE=2 SV=1) HSP 1 Score: 122.094 bits (305), Expect = 2.671e-42 Identity = 55/61 (90.16%), Postives = 58/61 (95.08%), Query Frame = 2 Query: 230 PFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK 412 PFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHS WAMLGALGCVFPE+LS+ Sbjct: 1 PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSTWAMLGALGCVFPELLSR 61 HSP 2 Score: 62.7734 bits (151), Expect = 2.671e-42 Identity = 27/30 (90.00%), Postives = 29/30 (96.67%), Query Frame = 3 Query: 411 KNGVKFGEAVWFKAGAQIFSEGGLDYLGKP 500 +NGVKFGEAVWFKAG+QIFSEGGLDYLG P Sbjct: 61 RNGVKFGEAVWFKAGSQIFSEGGLDYLGNP 90 HSP 3 Score: 30.0314 bits (66), Expect = 2.671e-42 Identity = 23/67 (34.33%), Postives = 35/67 (52.24%), Query Frame = 1 Query: 481 LTILANPNLISCSEHFWAIWALPSLCLNGFCLKGYRIVGGPSWWKNLTPLFPLVGCFWTHLGLG*GP 681 L L NP+L+ ++ AIWA + + ++GYRI GGP + P++P G + LGL P Sbjct: 84 LDYLGNPSLVH-AQSILAIWACQVVLMGA--VEGYRIAGGP-LGEVTDPIYP--GGSFDPLGLADDP 144
BLAST of EY684107 vs. ExPASy Swiss-Prot
Match: CB48_MAIZE (Chlorophyll a-b binding protein 48, chloroplastic OS=Zea mays GN=CAB48 PE=3 SV=1) HSP 1 Score: 136.732 bits (343), Expect = 2.487e-41 Identity = 74/123 (60.16%), Postives = 81/123 (65.85%), Query Frame = 2 Query: 56 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTV-KSAPQ---SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK 412 AT AI A G+ A + F GRITMR+T K P S WYG DR YLGP S PSYLTGEFPGDYGWDT GLSADPETFAKNRELEVIH RWA+ LGCVFPE+L++ Sbjct: 4 ATMAITSRALVGKPAAGTRDVFGE-------GRITMRKTAAKPKPARSGSPWYGADRVLYLGPLSGSPPSYLTGEFPGDYGWDTEGLSADPETFAKNRELEVIHCRWAIAVGLGCVFPELLAR 119 HSP 2 Score: 54.299 bits (129), Expect = 2.487e-41 Identity = 23/30 (76.67%), Postives = 26/30 (86.67%), Query Frame = 3 Query: 411 KNGVKFGEAVWFKAGAQIFSEGGLDYLGKP 500 +NGVKFGE VWFKAG+QIFSEGGL + G P Sbjct: 119 RNGVKFGEGVWFKAGSQIFSEGGLSHPGNP 148
BLAST of EY684107 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1) HSP 1 Score: 124.79 bits (312), Expect = 5.960e-40 Identity = 59/82 (71.95%), Postives = 71/82 (86.59%), Query Frame = 2 Query: 179 SAPQSI---WYGPDRPKYLGPFSEQ-TPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK 412 +AP+S +YGP+R K+LGP+SE TP+YLTGEFPGDYGWDTAGLSADPETF + RELE+IH+RWAMLGALGC PE+L+K Sbjct: 27 AAPKSSGVEFYGPNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCQTPELLAK 108 HSP 2 Score: 61.6178 bits (148), Expect = 5.960e-40 Identity = 27/30 (90.00%), Postives = 28/30 (93.33%), Query Frame = 3 Query: 411 KNGVKFGEAVWFKAGAQIFSEGGLDYLGKP 500 K+G KFGEAVWFKAGAQIFSEGGLDYLG P Sbjct: 108 KSGTKFGEAVWFKAGAQIFSEGGLDYLGNP 137
BLAST of EY684107 vs. ExPASy Swiss-Prot
Match: CB23_NICPL (Chlorophyll a-b binding protein C, chloroplastic OS=Nicotiana plumbaginifolia GN=CABC PE=3 SV=1) HSP 1 Score: 159.073 bits (401), Expect = 4.194e-38 Identity = 94/177 (53.11%), Postives = 115/177 (64.97%), Query Frame = 2 Query: 56 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAP----QSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKEWSEIRRSSLVQGWRSNIL*RWP*LSWQTPTSFHAQNIFGQSGPCQVCALMGFV 574 +T A+ S+FAG+ A++ S G G++TMR+T A S WYGP+R KYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+L++ + + +G S I + P+ HAQ+I CQV LMG V Sbjct: 4 STMALSSSSFAGK-AVKLSPSSSEITG---NGKVTMRKTASKAKPVSSSSPWYGPNRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKG-GSQIFSQGGLDYLGNPSLVHAQSILA-IWACQV-VLMGAV 173
BLAST of EY684107 vs. ExPASy Swiss-Prot
Match: CB2_MALDO (Chlorophyll a-b binding protein AB10, chloroplastic OS=Malus domestica PE=3 SV=1) HSP 1 Score: 119.398 bits (298), Expect = 1.277e-36 Identity = 56/66 (84.85%), Postives = 59/66 (89.39%), Query Frame = 2 Query: 212 RPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILS 409 R KYLGPFS + PSYLTGEFPGDYGWDTAGLSA PETFAKNRELEVIHSR AM ALGC+FPE+LS Sbjct: 58 RVKYLGPFSGEWPSYLTGEFPGDYGWDTAGLSAYPETFAKNRELEVIHSRCAMSAALGCIFPELLS 123 HSP 2 Score: 55.8398 bits (133), Expect = 1.277e-36 Identity = 25/28 (89.29%), Postives = 25/28 (89.29%), Query Frame = 3 Query: 417 GVKFGEAVWFKAGAQIFSEGGLDYLGKP 500 G FGEAVWFKAGAQIFSEGGLDYLG P Sbjct: 126 GQGFGEAVWFKAGAQIFSEGGLDYLGNP 153
BLAST of EY684107 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1) HSP 1 Score: 124.405 bits (311), Expect = 1.666e-36 Identity = 58/90 (64.44%), Postives = 75/90 (83.33%), Query Frame = 2 Query: 152 RITMRRTVKSAPQSI--WYGPDRPKYLGPFSEQ-TPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK 412 R T ++ + + P++ +YGPDR K+LGPFSE TP YLTGEFPGDYGWDTAGLSADP+TFA+ RE+E+IH+RWA+LGALG + PE+LS+ Sbjct: 16 RQTRQQRMATVPRAAVEFYGPDRAKFLGPFSENDTPEYLTGEFPGDYGWDTAGLSADPQTFARYREIELIHARWALLGALGILTPELLSQ 105 HSP 2 Score: 50.447 bits (119), Expect = 1.666e-36 Identity = 21/26 (80.77%), Postives = 25/26 (96.15%), Query Frame = 3 Query: 417 GVKFGEAVWFKAGAQIFSEGGLDYLG 494 GV+FGE VWFKAGAQIF++GGL+YLG Sbjct: 108 GVQFGEPVWFKAGAQIFADGGLNYLG 133
BLAST of EY684107 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1) HSP 1 Score: 151.754 bits (382), Expect = 6.696e-36 Identity = 108/240 (45.00%), Postives = 129/240 (53.75%), Query Frame = 2 Query: 53 MATSAIQQSAFAGQTALRQSNEFVRKVGVADG----GRITMRRTVK-----SAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKE--------WSEIRRSSLVQGWRSNIL*RWP*LSWQTPTSFHAQNIFGQSGPCQVCALMGFV*KDTELWAVLLGGRT*PHFFPWLGAFGPTWVWVEDPQ-IKLLKFKRSRN 718 MA+ I AFAG + +GV G R+TMR+ SA S WYGPDR YLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FAKNRELEVIH RWAMLGALGCVFPE+L++ W + +G + P+ HAQ+I CQV LMG V + + LG T P +P G+F P + EDP+ LK K +N Sbjct: 1 MASCGIGSCAFAGGQISSLKPHTNQLLGVGAGVHGEARVTMRKATTKKLTASASTSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPENFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYL---------GNPSLVHAQSILA-IWACQV-ILMGAV-EGYRIAGGPLGEVTDP-IYPG-GSFDPLGL-AEDPEAFAELKVKEIKN 225
BLAST of EY684107 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 5.904e-26 Identity = 46/79 (58.23%), Postives = 55/79 (69.62%), Query Frame = 2 Query: 179 SAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKE 415 S+ + +YGPD Q P TGEFPGDYGWDTAGLSADPETF + RELE+IH+R +LGALG V PE+L+ E Sbjct: 51 SSSANQFYGPDATSGWD-LQHQHPRLPTGEFPGDYGWDTAGLSADPETFKRYRELELIHARCGLLGALGMVTPELLADE 128 HSP 2 Score: 48.1358 bits (113), Expect = 5.904e-26 Identity = 20/31 (64.52%), Postives = 27/31 (87.10%), Query Frame = 3 Query: 411 KNGVKFGEA-VWFKAGAQIFSEGGLDYLGKP 500 ++G+KFG+A +WFKAGA IF +GGL+YLG P Sbjct: 128 EDGIKFGDAAIWFKAGAAIFQDGGLNYLGNP 158
BLAST of EY684107 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 9.962e-18 Identity = 39/75 (52.00%), Postives = 47/75 (62.67%), Query Frame = 2 Query: 197 WYGPDRPKYLGPF---SEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK 412 WYGPDR +L + P YL GE GDYG+D GL PE FAK + E+IH+RWAMLGA G + PE L+K Sbjct: 62 WYGPDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWAMLGAAGFIIPEALNK 136 HSP 2 Score: 30.4166 bits (67), Expect = 9.962e-18 Identity = 16/33 (48.48%), Postives = 18/33 (54.55%), Query Frame = 3 Query: 411 KNGVKFG-EAVWFKAGAQIFSEGGLDYLGKPQP 506 K G G EAVWFK GA + L+Y GK P Sbjct: 136 KYGANCGPEAVWFKTGALLLDGNTLNYFGKNIP 168
BLAST of EY684107 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 2.317e-12 Identity = 44/113 (38.94%), Postives = 62/113 (54.87%), Query Frame = 2 Query: 74 QSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK 412 +++F G LR S +F+ VG R+V A ++ PDRP + P +L G PGD+G+D GL +DPE+ N + E++HSRWAMLGA G PE L+K Sbjct: 31 KASFLGGKRLRVS-KFIAPVG---------SRSV--AVSAVAADPDRPLWFP--GSTPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTK 129 The following BLAST results are available for this feature:
BLAST of EY684107 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 61
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Sequences
The
following sequences are available for this feature:
EST sequence >EY684107 ID=EY684107; Name=EY684107; organism=Citrus sinensis; type=EST; length=1078bpback to top |