EY684018
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EY684018 vs. ExPASy Swiss-Prot
Match: RD23A_HUMAN (UV excision repair protein RAD23 homolog A OS=Homo sapiens GN=RAD23A PE=1 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 1.454e-23 Identity = 68/175 (38.86%), Postives = 94/175 (53.71%), Query Frame = 1 Query: 145 AASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSXXXXXXXXXXXXXXSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLSELGKQNPQLVRLIQEHQADFLRLINEPVPG 669 AAS LV G+ E + +I+ MG ++R+ VV ALRA+YNNP RAVEYL +GIP E P +G S Q + AAG L+FLR+ PQFQ +R ++Q NP LL +L +LG++NPQL++ I HQ F++++NEP PG Sbjct: 153 AASTLVTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIPGSPE-------PEHGSVQES---------------------------QVSEQPATEAAGENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEP-PG 289
BLAST of EY684018 vs. ExPASy Swiss-Prot
Match: RD23A_BOVIN (UV excision repair protein RAD23 homolog A OS=Bos taurus GN=RAD23A PE=2 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 3.240e-23 Identity = 67/175 (38.29%), Postives = 94/175 (53.71%), Query Frame = 1 Query: 145 AASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSXXXXXXXXXXXXXXSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLSELGKQNPQLVRLIQEHQADFLRLINEPVPG 669 AAS LV G+ E + +I+ MG ++R+ VV ALRA+YNNP RAVEYL +GIP E P +G S + + S AG L+FLR+ PQFQ +R ++Q NP LL +L +LG++NPQL++ I HQ F++++NEP PG Sbjct: 153 AASTLVTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIPGSPE-------PEHGSVQESQ----------------------------VSEQPSTEAGENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEP-PG 288
BLAST of EY684018 vs. ExPASy Swiss-Prot
Match: RHP23_SCHPO (UV excision repair protein rhp23 OS=Schizosaccharomyces pombe GN=rhp23 PE=1 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 1.079e-18 Identity = 61/180 (33.89%), Postives = 90/180 (50.00%), Query Frame = 1 Query: 148 ASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSXXXXXXXXXXXXXXSSGPNANPLDLFPQGL------PDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLSELGKQNPQLVRLIQEHQADFLRLINEPVPG 669 A+ L G A++ +++MG ++R V RA+RAA+NNP+RAVEYL +GIPE N Q S + P +LF Q + S G L FLR+ PQFQ LR +VQ NPQ+L+ +L ++G+ +P L + I ++ FL+L+ E G Sbjct: 138 ANTLAVGAQRNVAVENMVEMG---YERSEVERAMRAAFNNPDRAVEYLLTGIPEDIL---------NRQREESAAALAAQQQQSEALAPTSTGQPANLFEQAALSENENQEQPSNTVGDDPLGFLRSIPQFQQLRQIVQQNPQMLETILQQIGQGDPALAQAITQNPEAFLQLLAEGAEG 305
BLAST of EY684018 vs. ExPASy Swiss-Prot
Match: RAD23_DICDI (UV excision repair protein RAD23 homolog OS=Dictyostelium discoideum GN=rcbA PE=1 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 1.234e-14 Identity = 56/168 (33.33%), Postives = 78/168 (46.43%), Query Frame = 1 Query: 148 ASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSXXXXXXXXXXXXXXSSGPNANPLDLFPQGLPDV-GSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLSELGKQNPQLVRLIQEHQADFLRL 648 +S+ G LE I+ I DMG + RD V+RALR +NN ERA+EYL SG N AAN P+ ++ G G +G + LRN P F +LR + NP ++ +L +L + NP LVR IQE+ +F+RL Sbjct: 154 SSDFATGTELEATIKNITDMG---FARDQVLRALRLTFNNAERAIEYLVSG---------------NIPAAND--------------------------PEDEEEMEGGGGSGDNPFEALRNHPHFNLLREAISKNPSIIPGILQQLAQTNPALVRQIQENPNEFIRL 277
BLAST of EY684018 vs. ExPASy Swiss-Prot
Match: RAD23_YEAST (UV excision repair protein RAD23 OS=Saccharomyces cerevisiae GN=RAD23 PE=1 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 4.852e-11 Identity = 58/186 (31.18%), Postives = 82/186 (44.09%), Query Frame = 1 Query: 160 VAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPE-----QAEVQPVARAPGNGQAANSXXXXXXXXXXXXXXSSGPNANPLDLFPQGLP--DVGSGAAG--AGSLDFLRNSPQFQV---------LRAMVQANPQLLQPMLSELGKQNPQLVRLIQEHQADFLRLINEPV 663 V G I++I++MG + R+ V RALRAA+NNP+RAVEYL GIPE + + Q A A AA + DLF Q + SGA G G+ D + P + LR +V NP+ L P+L + + PQL I + F+ ++ E V Sbjct: 143 VVGTERNETIERIMEMG---YQREEVERALRAAFNNPDRAVEYLLMGIPENLRQPEPQQQTAAAAEQPSTAATTAEQPAED----------------DLFAQAAQGGNASSGALGTTGGATDAAQGGPPGSIGLTVEDLLSLRQVVSGNPEALAPLLENISARYPQLREHIMANPEVFVSMLLEAV 309 The following BLAST results are available for this feature:
BLAST of EY684018 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 15
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Sequences
The
following sequences are available for this feature:
EST sequence >EY684018 ID=EY684018; Name=EY684018; organism=Citrus sinensis; type=EST; length=965bpback to top |