EY684018

Overview
NameEY684018
Unique NameEY684018
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length965
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684018 vs. ExPASy Swiss-Prot
Match: RD23A_HUMAN (UV excision repair protein RAD23 homolog A OS=Homo sapiens GN=RAD23A PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.454e-23
Identity = 68/175 (38.86%), Postives = 94/175 (53.71%), Query Frame = 1
Query:  145 AASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSXXXXXXXXXXXXXXSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLSELGKQNPQLVRLIQEHQADFLRLINEPVPG 669
            AAS LV G+  E  + +I+ MG   ++R+ VV ALRA+YNNP RAVEYL +GIP   E       P +G    S                           Q      + AAG   L+FLR+ PQFQ +R ++Q NP LL  +L +LG++NPQL++ I  HQ  F++++NEP PG
Sbjct:  153 AASTLVTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIPGSPE-------PEHGSVQES---------------------------QVSEQPATEAAGENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEP-PG 289          
BLAST of EY684018 vs. ExPASy Swiss-Prot
Match: RD23A_BOVIN (UV excision repair protein RAD23 homolog A OS=Bos taurus GN=RAD23A PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 3.240e-23
Identity = 67/175 (38.29%), Postives = 94/175 (53.71%), Query Frame = 1
Query:  145 AASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSXXXXXXXXXXXXXXSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLSELGKQNPQLVRLIQEHQADFLRLINEPVPG 669
            AAS LV G+  E  + +I+ MG   ++R+ VV ALRA+YNNP RAVEYL +GIP   E       P +G    S                             + +  S  AG   L+FLR+ PQFQ +R ++Q NP LL  +L +LG++NPQL++ I  HQ  F++++NEP PG
Sbjct:  153 AASTLVTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIPGSPE-------PEHGSVQESQ----------------------------VSEQPSTEAGENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEP-PG 288          
BLAST of EY684018 vs. ExPASy Swiss-Prot
Match: RHP23_SCHPO (UV excision repair protein rhp23 OS=Schizosaccharomyces pombe GN=rhp23 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.079e-18
Identity = 61/180 (33.89%), Postives = 90/180 (50.00%), Query Frame = 1
Query:  148 ASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSXXXXXXXXXXXXXXSSGPNANPLDLFPQGL------PDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLSELGKQNPQLVRLIQEHQADFLRLINEPVPG 669
            A+ L  G     A++ +++MG   ++R  V RA+RAA+NNP+RAVEYL +GIPE            N Q   S              +      P +LF Q         +  S   G   L FLR+ PQFQ LR +VQ NPQ+L+ +L ++G+ +P L + I ++   FL+L+ E   G
Sbjct:  138 ANTLAVGAQRNVAVENMVEMG---YERSEVERAMRAAFNNPDRAVEYLLTGIPEDIL---------NRQREESAAALAAQQQQSEALAPTSTGQPANLFEQAALSENENQEQPSNTVGDDPLGFLRSIPQFQQLRQIVQQNPQMLETILQQIGQGDPALAQAITQNPEAFLQLLAEGAEG 305          
BLAST of EY684018 vs. ExPASy Swiss-Prot
Match: RAD23_DICDI (UV excision repair protein RAD23 homolog OS=Dictyostelium discoideum GN=rcbA PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.234e-14
Identity = 56/168 (33.33%), Postives = 78/168 (46.43%), Query Frame = 1
Query:  148 ASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVQPVARAPGNGQAANSXXXXXXXXXXXXXXSSGPNANPLDLFPQGLPDV-GSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLSELGKQNPQLVRLIQEHQADFLRL 648
            +S+   G  LE  I+ I DMG   + RD V+RALR  +NN ERA+EYL SG               N  AAN                           P+   ++ G G +G    + LRN P F +LR  +  NP ++  +L +L + NP LVR IQE+  +F+RL
Sbjct:  154 SSDFATGTELEATIKNITDMG---FARDQVLRALRLTFNNAERAIEYLVSG---------------NIPAAND--------------------------PEDEEEMEGGGGSGDNPFEALRNHPHFNLLREAISKNPSIIPGILQQLAQTNPALVRQIQENPNEFIRL 277          
BLAST of EY684018 vs. ExPASy Swiss-Prot
Match: RAD23_YEAST (UV excision repair protein RAD23 OS=Saccharomyces cerevisiae GN=RAD23 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.852e-11
Identity = 58/186 (31.18%), Postives = 82/186 (44.09%), Query Frame = 1
Query:  160 VAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPE-----QAEVQPVARAPGNGQAANSXXXXXXXXXXXXXXSSGPNANPLDLFPQGLP--DVGSGAAG--AGSLDFLRNSPQFQV---------LRAMVQANPQLLQPMLSELGKQNPQLVRLIQEHQADFLRLINEPV 663
            V G      I++I++MG   + R+ V RALRAA+NNP+RAVEYL  GIPE     + + Q  A A     AA +                       DLF Q     +  SGA G   G+ D  +  P   +         LR +V  NP+ L P+L  +  + PQL   I  +   F+ ++ E V
Sbjct:  143 VVGTERNETIERIMEMG---YQREEVERALRAAFNNPDRAVEYLLMGIPENLRQPEPQQQTAAAAEQPSTAATTAEQPAED----------------DLFAQAAQGGNASSGALGTTGGATDAAQGGPPGSIGLTVEDLLSLRQVVSGNPEALAPLLENISARYPQLREHIMANPEVFVSMLLEAV 309          
The following BLAST results are available for this feature:
BLAST of EY684018 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
RD23A_HUMAN1.454e-2338.86UV excision repair protein RAD23 homolog A OS=Homo... [more]
RD23A_BOVIN3.240e-2338.29UV excision repair protein RAD23 homolog A OS=Bos ... [more]
RHP23_SCHPO1.079e-1833.89UV excision repair protein rhp23 OS=Schizosaccharo... [more]
RAD23_DICDI1.234e-1433.33UV excision repair protein RAD23 homolog OS=Dictyo... [more]
RAD23_YEAST4.852e-1131.18UV excision repair protein RAD23 OS=Saccharomyces ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-001-B08-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684018 ID=EY684018; Name=EY684018; organism=Citrus sinensis; type=EST; length=965bp
CCAACCCCTGCAGTGACCCCATCAACAGCTCCTCAGACTGCCGTGCCAAT
CTCTACAGAGCCTACACCTGCTCCTACTCCTGCTCCTGCTTCTGCTTCTG
TGTCATCAGTTTCTGCTACGTCAGAGTCTGGTGTGTATGGGCATGCTGCA
TCTAATCTGGTTGCTGGGAACAACTTGGAGGGAGCAATCCAGCAGATTCT
TGATATGGGTGGAGGGACTTGGGATAGAGATACTGTTGTTCGTGCTCTTC
GAGCTGCTTATAATAATCCTGAGAGGGCTGTTGAATATTTATATTCTGGT
ATACCTGAGCAAGCTGAAGTTCAACCTGTGGCCCGCGCCCCTGGTAATGG
ACAAGCTGCTAACTCTCCAACTCAGATGCCACAGCCAACCCAACCGGCAC
CCGTTACTTCTAGTGGGCCAAATGCAAATCCTTTGGACCTCTTTCCTCAG
GGCCTTCCTGACGTGGGTTCAGGTGCAGCTGGCGCTGGCAGTCTTGACTT
TTTACGTAATAGTCCACAGTTTCAAGTTTTGCGAGCTATGGTGCAGGCAA
ATCCTCAATTATTGCAGCCCATGCTTTCAGAGTTGGGGAAACAAAATCCT
CAGCTAGTGAGGCTTATTCAGGAACATCAGGCTGACTTCCTTCGGCTTAT
CAATGAACCTGTTCCAGGGTGGTGAGGGGAAATTTTGGGGGAACCCCCTT
GCTGGGTTTAATTGCCCACGCCCAAACCAACTCACCCCCCAAAAAAAGCG
CAACCCATACAACAGCCTTTAATGGGCAAGGCGCTTTTCATCCACCCAAC
TTACTTTGGTACGTGTCCCTTTATTCTGACAAAATAACAATAACGTAATT
TCATGACACAATAAATTTAATGAAAAAAATTTGCTAGAGAATATGAGGGA
ATGGTACCGCACACGGGGCAAAAACACAACACAAACACAAGCATGGACAC
TGACCACAACGCCAT
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