EY684010

Overview
NameEY684010
Unique NameEY684010
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length887
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684010 vs. ExPASy Swiss-Prot
Match: VPS29_SCHPO (Vacuolar protein sorting-associated protein 29 OS=Schizosaccharomyces pombe GN=vps29 PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 3.365e-32
Identity = 66/156 (42.31%), Postives = 99/156 (63.46%), Query Frame = 1
Query:  169 IGDLHIPHRASDLPQKFKSMLVPGKIQHIICTGNLSIKEVHDYLKSLCPDLHVTRGEYDEDSRYPETKTLTIGQFKLGICHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFTAYQLEGGGVINPASCSGAYRTFSFD----VTPALYLGDFAG 624
            IGD HIP RA  L +KF+ +L+PGKI  IIC GNL+   V++YLK +C DL + +G +D  S+ P    +T+G FK+G  +GH V+P    ++L++L R++D DIL+ G TH+F AY+L+G   +NP S +GA    + +    + P+  L D  G
Sbjct:    6 IGDFHIPDRAPKLSEKFRQLLIPGKISQIICLGNLTSTSVYEYLKHVCSDLKLVKGAFDISSKAPIAGKITLGSFKIGYTNGHLVVPQDSPEALSILAREMDADILLFGGTHKFAAYELDGCFFVNPGSATGAPNVSAVEDDEKIVPSFVLMDVQG 161          
BLAST of EY684010 vs. ExPASy Swiss-Prot
Match: PEP11_YEAST (Vacuolar protein sorting-associated protein 29 OS=Saccharomyces cerevisiae GN=VPS29 PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.199e-21
Identity = 64/158 (40.51%), Postives = 87/158 (55.06%), Query Frame = 1
Query:  166 AIGDLHIPHRASDLPQKFKSML-VPGKIQHIICTGNLSIKEVHDYLK---SLCPDLHVTRGEYD-------------EDSR----YPETKTLTIGQFKLGICHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFTAYQLEGGGVINPASCSGAYRT 576
            A+ D HIP RA+DLP KFK +L VP KI  +   GN +  + +D+LK    +  ++ + RGE+D             ++SR     P    +  G  K+G C G+ V+P  D  SL  L RQLDVDIL+ G TH   AY LEG   +NP SC+GA+ T
Sbjct:    5 ALSDAHIPDRATDLPVKFKKLLSVPDKISQVALLGNST--KSYDFLKFVNQISNNITIVRGEFDNGHLPSTKKDKASDNSRPMEEIPMNSIIRQGALKIGCCSGYTVVPKNDPLSLLALARQLDVDILLWGGTHNVEAYTLEGKFFVNPGSCTGAFNT 160          
The following BLAST results are available for this feature:
BLAST of EY684010 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
VPS29_SCHPO3.365e-3242.31Vacuolar protein sorting-associated protein 29 OS=... [more]
PEP11_YEAST1.199e-2140.51Vacuolar protein sorting-associated protein 29 OS=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-650-001-A11-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684010 ID=EY684010; Name=EY684010; organism=Citrus sinensis; type=EST; length=887bp
CTATGATCTACGAACTTAACTAAGAAGCCTTGCATCCTTACTTCGGCCGG
TTGCTAATTACCAATTGCTCTTGTTCCTTAAACTAATCAGACAAGAACAG
ATTATGGTGATGGGTCAATATTAAGAGAGAGATTGCTTATTTTGTTGAAG
ATGGTGTTAGTATTAGCAATCGGAGACCTTCACATTCCTCACCGTGCATC
TGACCTGCCCCAAAAGTTCAAATCTATGCTCGTTCCTGGCAAAATTCAGC
ACATCATTTGCACTGGCAATCTCTCTATCAAAGAAGTCCATGATTATTTG
AAGAGTCTTTGTCCTGATTTGCATGTCACTCGAGGTGAATATGATGAAGA
TTCACGTTATCCCGAAACTAAGACACTCACCATTGGGCAATTCAAGCTTG
GAATCTGCCATGGTCATCAGGTTATTCCGTGGGGGGACTTGGATTCGCTG
GCAATGCTGCAAAGGCAGTTGGATGTGGACATCCTTGTGACTGGTCATAC
CCATCAGTTCACAGCCTACCAACTTGAAGGTGGTGGTGTTATAAATCCTG
CCTCCTGCAGTGGCGCCTACAGGACCTTTTCATTCGATGTAACCCCGGCT
TTGTACCTCGGGGACTTTGCTGGCCCGCGAGTCGCGTTTATGTTTACTAA
TTATATGTGGGTGGAACTTCTCGTTGCCGCGTCGTCCATCGTTCGATCGC
TCCCTCTGCCCCCTCCCTTAGTCTATAGGCGCTACACCTCTTGTCTGCCC
TCTGCCCTTCTGCTAAAGCTTGTCTTTGTAATCGCTGAAACTCGGGGACA
TGCGGAATTCCACTTTTCATACGCTTGCGCACCACCACTGGCACCTTGTT
GCATACGCATGCACGCCGCCGAACCCGCCCTCCGTCC
back to top