EY683939

Overview
NameEY683939
Unique NameEY683939
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length959
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY683939 vs. ExPASy Swiss-Prot
Match: RL15_ACISJ (50S ribosomal protein L15 OS=Acidovorax sp. (strain JS42) GN=rplO PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 8.196e-11
Identity = 48/118 (40.68%), Postives = 67/118 (56.78%), Query Frame = 1 
Query:  238 HKGQKAR--GTMKFGFEGGQTPMRRRLPKRGFKNPFSLTFQPVGLGKIAYLINAGKIDSHELITMKTLKDAGAIGKQIEDGVRLMGRGAEKIKWPIHLEASRVTVRAKAAVEAAGGSV 585
            HKGQK+R  G  K GFEGGQ P++RRLPKRGFK+        + L     L N G  +    + +  LK+AG +G ++   V+++  G  +I   + L     T  AKAA+EAAGGS+
Sbjct:   35 HKGQKSRSGGYHKVGFEGGQMPLQRRLPKRGFKSHLLKFNAEISL---TALENLGLAE----VDVLALKNAGLVG-ELAKVVKVIKSG--EISKAVKLSGITATAGAKAAIEAAGGSL 142
The following BLAST results are available for this feature:
BLAST of EY683939 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 341
Match NameE-valueIdentityDescription
RL15_ACISJ8.196e-1140.6850S ribosomal protein L15 OS=Acidovorax sp. (strai... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-048-C12-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY683939 ID=EY683939; Name=EY683939; organism=Citrus sinensis; type=EST; length=959bp
CCACGCGTCCGCTCAATACCCACTTTAAACCATAGAGCAGTTCCATTCCA
ATCCCTTCAATTTGCACAATGCCCTAATTCAACCCCGAACGAGCAAATTT
CGAGTCAATTTGTTATGGGCATTAGGTCTTTTAGCCTATTAAGCTTGAAT
GATTTGAGAGACAAAGTGCCTAGAAAGCAAAAGACAAGAAAAGGAAGAGG
TATTGGGTCAGGTAAAGGGAAGACTGCAGGGAGAGGCCACAAGGGACAGA
AGGCAAGAGGAACTATGAAGTTTGGATTTGAAGGTGGTCAAACGCCAATG
CGTCGTCGTTTGCCCAAACGTGGGTTTAAGAACCCTTTTAGCCTCACCTT
TCAGCCAGTAGGTTTGGGAAAGATTGCATATCTAATAAATGCAGGGAAGA
TAGATTCTCATGAATTAATTACAATGAAAACTCTCAAGGATGCTGGAGCA
ATAGGGAAGCAGATAGAAGATGGAGTAAGATTGATGGGTCGTGGAGCTGA
AAAGATCAAGTGGCCAATTCATCTTGAGGCGTCAAGAGTAACCGTTAGGG
CAAAAGCAGCAGTTGAAGCTGCCGGTGGTTCTGTCAAAAGAGTGCATTAC
AACAAGCTGGGTTTGCGGGCATTGCATAAGCCGGAGTGGTTTGAGAAGAA
GGGGAGGTTGCTGCCAAGACCAGCTAGGCGCCCTCCTAAATGGCAGATAA
AGTTGATAGCATTGGGTCTCTTCCCGGCCCCCCCAACCCCTTTCATTTTT
CCCCCGAAAAGGGAAGCAACAGCCTCCCCCATCGGCCCAGGGCTAACAAA
AATAAACAATTCAGTTTGGTTTTCCTCCTTCAAATTTTTGTATTTTTCCA
ACCTTAAATTAATCCACACGGGGGGAGAGGATTTTGAGAGAAATTTTGGA
ATTAAGGGGGGAGAAGGGTTTTTTTTCCCCGGGCCGGGGGCCAGGGGAAA
GAAGCGGGG
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