EY683934

Overview
NameEY683934
Unique NameEY683934
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1021
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY683934 vs. ExPASy Swiss-Prot
Match: E4PD_PHOPR (D-erythrose-4-phosphate dehydrogenase OS=Photobacterium profundum GN=epd PE=3 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 6.867e-11
Identity = 35/125 (28.00%), Postives = 60/125 (48.00%), Query Frame = 2
Query:   41 NIVPTSTGAAKAVSLVMPQLKGKLNGIALRXXXXXXXXXXXXXXXEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLA 415
            +I+P  T     +  + P+   K   I++R                K  +   DVN A  + +   L+GI+   + PLVS+DF     S+ +D + T V    ++K++ W DNEWG++ R++D A
Sbjct:  212 SIIPVDTKLHLGIGRIFPKFVDKFEAISVRVPTINVTAMDLSVTV-KTNVKVNDVNQALSEVSRCTLEGIVDYTEAPLVSIDFNHDPHSAIVDGTQTRVSNKHLIKLLVWCDNEWGFANRMLDTA 335          
BLAST of EY683934 vs. ExPASy Swiss-Prot
Match: G3P_BOLED (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Boletus edulis GN=GPD PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 8.969e-11
Identity = 42/110 (38.18%), Postives = 62/110 (56.36%), Query Frame = 2
Query:   41 NIVPTSTGAAKAVSLVMPQLKGKLNGIALRXXXXXXXXXXXXXXXEKKGITAEDVNAAFRKAAE-GPLKGILAVCDVPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVA 367
            NI+P+STGAAKAV  V+P L GKL G+A R                K   + E++  AF++A+E   LKGI+A  +  +VS DF     SS  D++  +++ D  VK++A
Sbjct:  183 NIIPSSTGAAKAVGKVIPVLNGKLTGLAFRVPTLDVSVVDLVVRLAKP-TSYEEIKTAFKEASESSELKGIVAYTEDAVVSTDFLGHHASSIFDATGGIMLNDSFVKLIA 291          
BLAST of EY683934 vs. ExPASy Swiss-Prot
Match: E4PD_VIBPA (D-erythrose-4-phosphate dehydrogenase OS=Vibrio parahaemolyticus GN=epd PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 8.969e-11
Identity = 35/125 (28.00%), Postives = 59/125 (47.20%), Query Frame = 2
Query:   41 NIVPTSTGAAKAVSLVMPQLKGKLNGIALRXXXXXXXXXXXXXXXEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLA 415
            +I+P  T   K +  + P+   K   I++R                   +   DVN     A++  L+ I+   + PLVS+DF     S+ +D + T V    +VK++ W DNEWG++ R++D A
Sbjct:  211 SIIPVDTKLHKGIERIFPKFSNKFEAISVRVPTVNVTAMDLSVTINTN-VKVNDVNQTIVNASQCTLRNIVDYTESPLVSIDFNHDPHSAIVDGTQTRVSNGQLVKMLVWCDNEWGFANRMLDTA 334          
BLAST of EY683934 vs. ExPASy Swiss-Prot
Match: E4PD_ALISL (D-erythrose-4-phosphate dehydrogenase OS=Aliivibrio salmonicida (strain LFI1238) GN=epd PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 8.969e-11
Identity = 35/125 (28.00%), Postives = 58/125 (46.40%), Query Frame = 2
Query:   41 NIVPTSTGAAKAVSLVMPQLKGKLNGIALRXXXXXXXXXXXXXXXEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLA 415
            +I+P  T   K +  + P+   K   I++R                   +   D+N     A++  L  I+   + PLVS+DF     S+ +D S T V    +VK++ W DNEWG++ R++D A
Sbjct:  211 SIIPVDTKLHKGIERIFPKFSNKFEAISVRVPTVNVTAMDLSVTINTN-VKVNDINQTIVNASQCTLHNIVDYTEAPLVSIDFNHDPHSAIVDGSQTRVSNGHLVKMLVWCDNEWGFANRMLDTA 334          
The following BLAST results are available for this feature:
BLAST of EY683934 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 344
Match NameE-valueIdentityDescription
E4PD_PHOPR6.867e-1128.00D-erythrose-4-phosphate dehydrogenase OS=Photobact... [more]
G3P_BOLED8.969e-1138.18Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]
E4PD_VIBPA8.969e-1128.00D-erythrose-4-phosphate dehydrogenase OS=Vibrio pa... [more]
E4PD_ALISL8.969e-1128.00D-erythrose-4-phosphate dehydrogenase OS=Aliivibri... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-048-C07-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY683934 ID=EY683934; Name=EY683934; organism=Citrus sinensis; type=EST; length=1021bp
TTCACACAGGGACTTGAGGAGAGCGAGAGCTGCAGCGTTGAACATTGTCC
CAACGAGCACAGGTGCCGCCAAGGCTGTTTCTCTTGTGATGCCACAGCTC
AAAGGCAAGCTCAACGGCATTGCGCTCCGTGTGCCAACACCAAATGTTTC
AGTCGTTGACCTTGTTGTGAACGTTGAGAAAAAGGGTATTACAGCAGAAG
ATGTTAATGCAGCCTTCAGAAAGGCTGCTGAGGGGCCACTGAAGGGCATA
TTGGCCGTCTGCGATGTTCCACTGGTGTCGGTGGACTTCCGATGCTCTGA
TGTTTCCTCCACCATTGACTCTTCATTGACCATGGTCATGGGTGATGATA
TGGTCAAGGTTGTTGCCTGGTACGACAATGAATGGGGATACAGCCAAAGG
GTTGTCGATTTGGCGCATTTGGTTGCAACCAAGTGGCCAGGCGTGGCTGC
AGGCGGAAGCGGAGACCCATTGGAGGATTTCTGCCAGACAAACCCTGCTG
ATGAGGAGTGCAAAGTTTATGAAGCTTAAATTCTTTCTTAATTGGTTGGC
TAATTAATTACATAGGTTTTTCGCAACCTTTGTCACAAAATGCTTTTATA
TTAATGACAACTGAATGAATTGAACAGACAATTTATCAAATTATATGTCA
AGCCGAATGATCTTGCAAAATCATTGGTCTTTGTTAAAGACACGTAAACA
TGAAAATGGAAAAAACAAAAACAACTGTAAAAACTCTTCTATTCTTAACA
AATTCACACCAAAAGGGTCGTGGTAAGAACCAGCCCACCCCTGGTTCCGC
CGAAAAAACTTTGGGAACCCACTATCTTTTTTAAAAATAAAAATAATAAA
GTAATTTTGGATAAACCAACACATTTTATTTTAAAATTAATTTTTAGGGT
TTAATAAAAAAAAAAATAACCCCCAAGGTCCCCCCCGGGAGAAAAAAAAA
AATTTTTTTGGTAAACATTTTTACAAAAAAAATTAATTTTGTGTCTTAAA
AAAAAAAAAAAAAAAATTTTC
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