EY683904

Overview
NameEY683904
Unique NameEY683904
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length969
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY683904 vs. ExPASy Swiss-Prot
Match: RS4_SPOFR (40S ribosomal protein S4 OS=Spodoptera frugiperda GN=RpS4 PE=2 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 2.917e-51
Identity = 91/126 (72.22%), Postives = 106/126 (84.13%), Query Frame = 3 
Query:   48 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNKNFRLLYDTEGRFRLHSLRDEEAEFKLYKV 425
            MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPL++ LRNRLKYALT  EV+ I+ QR + VDGKVRTD TYPAGFMDVVSI KTN+ FRL+YD +GRF +H +  EEA++KL KV
Sbjct:    1 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTVHRITPEEAKYKLCKV 126

HSP 2 Score: 32.7278 bits (73), Expect = 2.917e-51
Identity = 13/23 (56.52%), Postives = 18/23 (78.26%), Query Frame = 2 
Query:  443 PEGFP*INTYNGRTIRYPDPINK 511
            P+  P + T++GRTIRYPDP+ K
Sbjct:  133 PKNVPFLVTHDGRTIRYPDPLIK 155
[Close]
BLAST of EY683904 vs. ExPASy Swiss-Prot
Match: RS4_CRIGR (40S ribosomal protein S4 OS=Cricetulus griseus GN=RPS4 PE=2 SV=2)

HSP 1 Score: 189.889 bits (481), Expect = 1.865e-50
Identity = 91/126 (72.22%), Postives = 105/126 (83.33%), Query Frame = 3 
Query:   48 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNKNFRLLYDTEGRFRLHSLRDEEAEFKLYKV 425
            MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQR + +DGKVRTD TYPAGFMDV+SI KT +NFRL+YDT+GRF +H +  EEA++KL KV
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITSEEAKYKLCKV 126

HSP 2 Score: 30.4166 bits (67), Expect = 1.865e-50
Identity = 12/22 (54.55%), Postives = 17/22 (77.27%), Query Frame = 2 
Query:  446 EGFP*INTYNGRTIRYPDPINK 511
            +G P + T++ RTIRYPDP+ K
Sbjct:  134 KGIPHLVTHDARTIRYPDPLIK 155
[Close]
BLAST of EY683904 vs. ExPASy Swiss-Prot
Match: RS4_BOVIN (40S ribosomal protein S4 OS=Bos taurus GN=RPS4 PE=2 SV=3)

HSP 1 Score: 189.504 bits (480), Expect = 2.431e-50
Identity = 91/126 (72.22%), Postives = 105/126 (83.33%), Query Frame = 3 
Query:   48 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNKNFRLLYDTEGRFRLHSLRDEEAEFKLYKV 425
            MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQR + +DGKVRTD TYPAGFMDV+SI KT +NFRL+YDT+GRF +H +  EEA++KL KV
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKV 126

HSP 2 Score: 30.4166 bits (67), Expect = 2.431e-50
Identity = 12/22 (54.55%), Postives = 17/22 (77.27%), Query Frame = 2 
Query:  446 EGFP*INTYNGRTIRYPDPINK 511
            +G P + T++ RTIRYPDP+ K
Sbjct:  134 KGIPHLVTHDARTIRYPDPLIK 155
[Close]
BLAST of EY683904 vs. ExPASy Swiss-Prot
Match: RS4X_RAT (40S ribosomal protein S4, X isoform OS=Rattus norvegicus GN=Rps4x PE=2 SV=2)

HSP 1 Score: 189.504 bits (480), Expect = 2.431e-50
Identity = 91/126 (72.22%), Postives = 105/126 (83.33%), Query Frame = 3 
Query:   48 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNKNFRLLYDTEGRFRLHSLRDEEAEFKLYKV 425
            MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQR + +DGKVRTD TYPAGFMDV+SI KT +NFRL+YDT+GRF +H +  EEA++KL KV
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKV 126

HSP 2 Score: 30.4166 bits (67), Expect = 2.431e-50
Identity = 12/22 (54.55%), Postives = 17/22 (77.27%), Query Frame = 2 
Query:  446 EGFP*INTYNGRTIRYPDPINK 511
            +G P + T++ RTIRYPDP+ K
Sbjct:  134 KGIPHLVTHDARTIRYPDPLIK 155
[Close]
BLAST of EY683904 vs. ExPASy Swiss-Prot
Match: RS4X_MOUSE (40S ribosomal protein S4, X isoform OS=Mus musculus GN=Rps4x PE=2 SV=2)

HSP 1 Score: 189.504 bits (480), Expect = 2.431e-50
Identity = 91/126 (72.22%), Postives = 105/126 (83.33%), Query Frame = 3 
Query:   48 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNKNFRLLYDTEGRFRLHSLRDEEAEFKLYKV 425
            MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQR + +DGKVRTD TYPAGFMDV+SI KT +NFRL+YDT+GRF +H +  EEA++KL KV
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKV 126

HSP 2 Score: 30.4166 bits (67), Expect = 2.431e-50
Identity = 12/22 (54.55%), Postives = 17/22 (77.27%), Query Frame = 2 
Query:  446 EGFP*INTYNGRTIRYPDPINK 511
            +G P + T++ RTIRYPDP+ K
Sbjct:  134 KGIPHLVTHDARTIRYPDPLIK 155
[Close]
BLAST of EY683904 vs. ExPASy Swiss-Prot
Match: RS4X_MESAU (40S ribosomal protein S4, X isoform OS=Mesocricetus auratus GN=RPS4X PE=2 SV=2)

HSP 1 Score: 189.504 bits (480), Expect = 2.431e-50
Identity = 91/126 (72.22%), Postives = 105/126 (83.33%), Query Frame = 3 
Query:   48 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNKNFRLLYDTEGRFRLHSLRDEEAEFKLYKV 425
            MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQR + +DGKVRTD TYPAGFMDV+SI KT +NFRL+YDT+GRF +H +  EEA++KL KV
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKV 126

HSP 2 Score: 30.4166 bits (67), Expect = 2.431e-50
Identity = 12/22 (54.55%), Postives = 17/22 (77.27%), Query Frame = 2 
Query:  446 EGFP*INTYNGRTIRYPDPINK 511
            +G P + T++ RTIRYPDP+ K
Sbjct:  134 KGIPHLVTHDARTIRYPDPLIK 155
[Close]
BLAST of EY683904 vs. ExPASy Swiss-Prot
Match: RS4X_MACFU (40S ribosomal protein S4, X isoform OS=Macaca fuscata fuscata GN=RPS4X PE=2 SV=3)

HSP 1 Score: 189.504 bits (480), Expect = 2.431e-50
Identity = 91/126 (72.22%), Postives = 105/126 (83.33%), Query Frame = 3 
Query:   48 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNKNFRLLYDTEGRFRLHSLRDEEAEFKLYKV 425
            MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQR + +DGKVRTD TYPAGFMDV+SI KT +NFRL+YDT+GRF +H +  EEA++KL KV
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKV 126

HSP 2 Score: 30.4166 bits (67), Expect = 2.431e-50
Identity = 12/22 (54.55%), Postives = 17/22 (77.27%), Query Frame = 2 
Query:  446 EGFP*INTYNGRTIRYPDPINK 511
            +G P + T++ RTIRYPDP+ K
Sbjct:  134 KGIPHLVTHDARTIRYPDPLIK 155
[Close]
BLAST of EY683904 vs. ExPASy Swiss-Prot
Match: RS4X_HUMAN (40S ribosomal protein S4, X isoform OS=Homo sapiens GN=RPS4X PE=1 SV=2)

HSP 1 Score: 189.504 bits (480), Expect = 2.431e-50
Identity = 91/126 (72.22%), Postives = 105/126 (83.33%), Query Frame = 3 
Query:   48 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNKNFRLLYDTEGRFRLHSLRDEEAEFKLYKV 425
            MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQR + +DGKVRTD TYPAGFMDV+SI KT +NFRL+YDT+GRF +H +  EEA++KL KV
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKV 126

HSP 2 Score: 30.4166 bits (67), Expect = 2.431e-50
Identity = 12/22 (54.55%), Postives = 17/22 (77.27%), Query Frame = 2 
Query:  446 EGFP*INTYNGRTIRYPDPINK 511
            +G P + T++ RTIRYPDP+ K
Sbjct:  134 KGIPHLVTHDARTIRYPDPLIK 155
[Close]
BLAST of EY683904 vs. ExPASy Swiss-Prot
Match: RS4X_FELCA (40S ribosomal protein S4, X isoform OS=Felis catus GN=RPS4X PE=2 SV=2)

HSP 1 Score: 189.504 bits (480), Expect = 2.431e-50
Identity = 91/126 (72.22%), Postives = 105/126 (83.33%), Query Frame = 3 
Query:   48 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNKNFRLLYDTEGRFRLHSLRDEEAEFKLYKV 425
            MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQR + +DGKVRTD TYPAGFMDV+SI KT +NFRL+YDT+GRF +H +  EEA++KL KV
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKV 126

HSP 2 Score: 30.4166 bits (67), Expect = 2.431e-50
Identity = 12/22 (54.55%), Postives = 17/22 (77.27%), Query Frame = 2 
Query:  446 EGFP*INTYNGRTIRYPDPINK 511
            +G P + T++ RTIRYPDP+ K
Sbjct:  134 KGIPHLVTHDARTIRYPDPLIK 155
[Close]
BLAST of EY683904 vs. ExPASy Swiss-Prot
Match: RS4X_CERAE (40S ribosomal protein S4, X isoform OS=Cercopithecus aethiops GN=RPS4X PE=2 SV=3)

HSP 1 Score: 189.504 bits (480), Expect = 2.431e-50
Identity = 91/126 (72.22%), Postives = 105/126 (83.33%), Query Frame = 3 
Query:   48 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNKNFRLLYDTEGRFRLHSLRDEEAEFKLYKV 425
            MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQR + +DGKVRTD TYPAGFMDV+SI KT +NFRL+YDT+GRF +H +  EEA++KL KV
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKV 126

HSP 2 Score: 30.4166 bits (67), Expect = 2.431e-50
Identity = 12/22 (54.55%), Postives = 17/22 (77.27%), Query Frame = 2 
Query:  446 EGFP*INTYNGRTIRYPDPINK 511
            +G P + T++ RTIRYPDP+ K
Sbjct:  134 KGIPHLVTHDARTIRYPDPLIK 155
The following BLAST results are available for this feature:
BLAST of EY683904 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 98
Match NameE-valueIdentityDescription
RS4_SPOFR2.917e-5172.2240S ribosomal protein S4 OS=Spodoptera frugiperda ... [more]
RS4_CRIGR1.865e-5072.2240S ribosomal protein S4 OS=Cricetulus griseus GN=... [more]
RS4_BOVIN2.431e-5072.2240S ribosomal protein S4 OS=Bos taurus GN=RPS4 PE=... [more]
RS4X_RAT2.431e-5072.2240S ribosomal protein S4, X isoform OS=Rattus norv... [more]
RS4X_MOUSE2.431e-5072.2240S ribosomal protein S4, X isoform OS=Mus musculu... [more]
RS4X_MESAU2.431e-5072.2240S ribosomal protein S4, X isoform OS=Mesocricetu... [more]
RS4X_MACFU2.431e-5072.2240S ribosomal protein S4, X isoform OS=Macaca fusc... [more]
RS4X_HUMAN2.431e-5072.2240S ribosomal protein S4, X isoform OS=Homo sapien... [more]
RS4X_FELCA2.431e-5072.2240S ribosomal protein S4, X isoform OS=Felis catus... [more]
RS4X_CERAE2.431e-5072.2240S ribosomal protein S4, X isoform OS=Cercopithec... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-048-A01-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY683904 ID=EY683904; Name=EY683904; organism=Citrus sinensis; type=EST; length=969bp
GAACAGACAAGCAGCCGCAGCGAGGCAGCAGCTTCAAACTCACAAAAATG
GCTAGAGGATTGAAGAAGCACTTGAAGAGGCTCAATGCCCCTAAGCACTG
GATGCTTGACAAGCTTGGTGGTGCATTTGCACCTAAGCCATCATCTGGTC
CCCACAAGTCAAGGGAATGCTTGCCATTGATCCTTGTATTGCGAAACCGT
TTGAAATATGCTCTCACATATCGTGAAGTTATTGCTATTCTGATGCAACG
ACATGTTCTTGTTGATGGGAAGGTTAGGACAGATAAAACCTACCCTGCTG
GTTTCATGGATGTTGTGTCAATTCCCAAGACCAACAAGAACTTCCGTCTC
CTTTATGACACCGAGGGTCGCTTCCGTCTCCATTCCCTCAGAGATGAGGA
GGCAGAATTCAAGCTTTACAAAGTATAATAAAACCAATTTGACCAGAAGG
GTTCCCATAAATCAACACCTATAATGGGCGTACCATACGCTACCCTGACC
CAATCAACAAGCCCATGAAACCATCAAGCATGACATAAAAAAGAACAGAT
ACCTAACTTCAACGGGAAAGAAATTGGCAATAAAATAAAGGACAATAGGA
GCTAGAACAAAAGACAGAATAAAAAACAAAAGAAAAAAAGAAAAAAAAGC
AAGGAAGAGAAGAAAAACAAAAACACAAACAAAGACGATGGGGAGGGAGT
GACTGAAAGCGTTGAAAAGACAGAAGAAAAAAAAAAAGAAAGGAGGAGAG
ACAGAAGCAAGCACAAACAGAAAAACTAACAACAACGAAGTTACAAAGAA
AGAACAGAAGAAAAAACAAGACAAACAAAGAGACGGACAAAGAGAATAAA
ACGAACAATAAAAAAGGGAGAAACAAGAACGACACGTAGCTGATCAAAAT
AGGAAGTAGAAGGAGGAATCAGAAGGAAAGGAGAAGAAAAAGAGGGAGCT
AACAAAGGAGAATAGATGA
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