EY683902

Overview
NameEY683902
Unique NameEY683902
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length586
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY683902 vs. ExPASy Swiss-Prot
Match: MIF_PIG (Macrophage migration inhibitory factor OS=Sus scrofa GN=MIF PE=1 SV=3)

HSP 1 Score: 74.3294 bits (181), Expect = 4.819e-13
Identity = 38/110 (34.55%), Postives = 58/110 (52.73%), Query Frame = 3 
Query:   12 ISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKGSNFGWNGSTF 341
            ++TNV    V     LSE T  +   +GKP  Y+ + +     M+FGG+ +P A   L SIG +    N+  S  +  +L ++L +   R +I +YD   +N GWNGSTF
Sbjct:    6 VNTNVPRASVP-DGFLSELTQQLVQAMGKPAQYIAVHVVPDQLMAFGGSSEPCALCSLHSIGKIGGAQNRSYSKLLCGLLAERLRISPDRIYINYYDMNAANVGWNGSTF 114
[Close]
BLAST of EY683902 vs. ExPASy Swiss-Prot
Match: MIF_SHEEP (Macrophage migration inhibitory factor OS=Ovis aries GN=MIF PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 8.220e-13
Identity = 39/110 (35.45%), Postives = 58/110 (52.73%), Query Frame = 3 
Query:   12 ISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKGSNFGWNGSTF 341
            ++TNV    V    +LSE T  +A   GKP  Y+ + +     M+FGG+ +P A   L SIG +    N+  S  +  +L ++L +   R +I F D   +N GWNGSTF
Sbjct:    6 VNTNVPRASVP-DGLLSELTQQLAQATGKPAQYIAVHVVPDQLMTFGGSSEPCALCSLHSIGKIGGAQNRSYSKLLCGLLTERLRISPDRIYINFCDMNAANVGWNGSTF 114
[Close]
BLAST of EY683902 vs. ExPASy Swiss-Prot
Match: MIF_BOVIN (Macrophage migration inhibitory factor OS=Bos taurus GN=MIF PE=1 SV=6)

HSP 1 Score: 73.559 bits (179), Expect = 8.220e-13
Identity = 39/110 (35.45%), Postives = 58/110 (52.73%), Query Frame = 3 
Query:   12 ISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKGSNFGWNGSTF 341
            ++TNV    V    +LSE T  +A   GKP  Y+ + +     M+FGG+ +P A   L SIG +    N+  S  +  +L ++L +   R +I F D   +N GWNGSTF
Sbjct:    6 VNTNVPRASVP-DGLLSELTQQLAQATGKPAQYIAVHVVPDQLMTFGGSSEPCALCSLHSIGKIGGAQNRSYSKLLCGLLTERLRISPDRIYINFCDMNAANVGWNGSTF 114
[Close]
BLAST of EY683902 vs. ExPASy Swiss-Prot
Match: MIF_MACMU (Macrophage migration inhibitory factor OS=Macaca mulatta GN=MIF PE=3 SV=4)

HSP 1 Score: 72.4034 bits (176), Expect = 1.831e-12
Identity = 38/110 (34.55%), Postives = 57/110 (51.82%), Query Frame = 3 
Query:   12 ISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKGSNFGWNGSTF 341
            ++TNV    V     LSE T  +A   GKP  Y+ + +     M+FGG+ +P A   L SIG +    N+  S  +  +L ++L +   R +I +YD   +N GWN STF
Sbjct:    6 VNTNVPRASVP-DGFLSELTQQLAQATGKPPQYIAVHVVPDQLMAFGGSSEPCALCSLHSIGKIGGAQNRSYSKLLCGLLAERLRISPDRVYINYYDMNAANVGWNNSTF 114
[Close]
BLAST of EY683902 vs. ExPASy Swiss-Prot
Match: MIF_MACFA (Macrophage migration inhibitory factor OS=Macaca fascicularis GN=MIF PE=3 SV=3)

HSP 1 Score: 72.4034 bits (176), Expect = 1.831e-12
Identity = 38/110 (34.55%), Postives = 57/110 (51.82%), Query Frame = 3 
Query:   12 ISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKGSNFGWNGSTF 341
            ++TNV    V     LSE T  +A   GKP  Y+ + +     M+FGG+ +P A   L SIG +    N+  S  +  +L ++L +   R +I +YD   +N GWN STF
Sbjct:    6 VNTNVPRASVP-DGFLSELTQQLAQATGKPPQYIAVHVVPDQLMAFGGSSEPCALCSLHSIGKIGGAQNRSYSKLLCGLLAERLRISPDRVYINYYDMNAANVGWNNSTF 114
[Close]
BLAST of EY683902 vs. ExPASy Swiss-Prot
Match: MIF_HUMAN (Macrophage migration inhibitory factor OS=Homo sapiens GN=MIF PE=1 SV=4)

HSP 1 Score: 72.4034 bits (176), Expect = 1.831e-12
Identity = 38/110 (34.55%), Postives = 57/110 (51.82%), Query Frame = 3 
Query:   12 ISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKGSNFGWNGSTF 341
            ++TNV    V     LSE T  +A   GKP  Y+ + +     M+FGG+ +P A   L SIG +    N+  S  +  +L ++L +   R +I +YD   +N GWN STF
Sbjct:    6 VNTNVPRASVP-DGFLSELTQQLAQATGKPPQYIAVHVVPDQLMAFGGSSEPCALCSLHSIGKIGGAQNRSYSKLLCGLLAERLRISPDRVYINYYDMNAANVGWNNSTF 114
The following BLAST results are available for this feature:
BLAST of EY683902 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
MIF_PIG4.819e-1334.55Macrophage migration inhibitory factor OS=Sus scro... [more]
MIF_SHEEP8.220e-1335.45Macrophage migration inhibitory factor OS=Ovis ari... [more]
MIF_BOVIN8.220e-1335.45Macrophage migration inhibitory factor OS=Bos taur... [more]
MIF_MACMU1.831e-1234.55Macrophage migration inhibitory factor OS=Macaca m... [more]
MIF_MACFA1.831e-1234.55Macrophage migration inhibitory factor OS=Macaca f... [more]
MIF_HUMAN1.831e-1234.55Macrophage migration inhibitory factor OS=Homo sap... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-650-041-H11-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY683902 ID=EY683902; Name=EY683902; organism=Citrus sinensis; type=EST; length=586bp
CTTGCTTGAACATTTCAACTAACGTCAAACTCGATGGCGTTGACACGTCA
TCCATCCTCTCCGAGGCCACCTCCACTGTCGCCAACATCATCGGCAAACC
CGAGGCCTACGTGATGATTGTGTTGAAGGGATCGGTACCTATGTCGTTTG
GTGGAACTGAGGATCCGGCAGCTTATGGTGAGTTGGTGTCCATTGGTGGC
CTTAACCCTGATGTGAACAAGAAGCTGAGTGCTGCAATTTCTGCAATTCT
TGAAAAGAAGCTGTCGGTACCCAAGTCACGATTCTTCATCAAGTTTTATG
ACACAAAGGGTTCAAACTTTGGATGGAATGGATCCACCTTCTAGATATTA
TTCTCAAAGCATGGCGCCATGAACTCTGACAATTGTCTTATCTATATGGT
GATTACAATCTTTAGAACTATGTTAATAATTGGCTGAATATTGTGTAATT
TCTCCTATGATGTGTTTTCTTCTCGTTGGTGCTAGCCAACAATAATTGTG
GAATAGGAACTGTTTGGTTTATGGAGTAATATTGCATTTGTTAATCTACT
GTTTGATCAAAAAAAAAAAAAAAAAAAAAAAAAAAA
back to top