EY680407

Overview
NameEY680407
Unique NameEY680407
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length859
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY680407 vs. ExPASy Swiss-Prot
Match: SODC_PANGI (Superoxide dismutase [Cu-Zn] OS=Panax ginseng GN=SODCC PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.482e-13
Identity = 45/118 (38.14%), Postives = 62/118 (52.54%), Query Frame = 3
Query:  414 ISFTQEGNGTTTVEGNISGVTPGDHALVIHTYGNVNNVWITTGAPFKPAGTK-----------GVIDNITVDVDGTATFKIYGK-VALSGPDSVIGRGLVLHSNPQSNPGPGSNLGWS 731
            I FTQE +G TTV G +SG+ PG H   +H  G+  N  ++TG  + PA  +           G + N+TV  DGTA F I  K + L G  S+IGR +V+H++P      G  L  S
Sbjct:   18 IHFTQEEDGPTTVTGKLSGLAPGLHGFHVHALGDTTNGCLSTGPHYNPANKEHGAPEDETRHAGDLGNVTVGEDGTAEFTIVDKQIPLIGSGSIIGRAVVVHADPDDLGKGGHELSKS 135          
BLAST of EY680407 vs. ExPASy Swiss-Prot
Match: SODC5_MAIZE (Superoxide dismutase [Cu-Zn] 4AP OS=Zea mays GN=SODCC.2 PE=2 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.936e-13
Identity = 41/118 (34.75%), Postives = 63/118 (53.39%), Query Frame = 3
Query:  414 ISFTQEGNGTTTVEGNISGVTPGDHALVIHTYGNVNNVWITTGAPFKPAGTK-----------GVIDNITVDVDGTATFKIY-GKVALSGPDSVIGRGLVLHSNPQSNPGPGSNLGWS 731
            I FTQEG+G T V G++SG+ PG H   +H  G+  N  ++TG  + PA  +           G + N+T   DG A   +   ++ L+GP+S+IGR +V+H++P      G  L  S
Sbjct:   18 IFFTQEGDGPTAVTGSVSGLKPGLHGFHVHALGDTTNGCMSTGPHYNPASKEHGAPEDENRHAGDLGNVTAGADGVANINVTDSQIPLTGPNSIIGRAVVVHADPDDLGKGGHELSKS 135          
BLAST of EY680407 vs. ExPASy Swiss-Prot
Match: SODC2_MAIZE (Superoxide dismutase [Cu-Zn] 2 OS=Zea mays GN=SODCC.1 PE=2 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 2.529e-13
Identity = 43/118 (36.44%), Postives = 62/118 (52.54%), Query Frame = 3
Query:  414 ISFTQEGNGTTTVEGNISGVTPGDHALVIHTYGNVNNVWITTGAPFKPAGTK-----------GVIDNITVDVDGTATFKIY-GKVALSGPDSVIGRGLVLHSNPQSNPGPGSNLGWS 731
            I F+QEG+G TTV G+ISG+ PG H   +H  G+  N  ++TG  F P G +           G + N+T   DG     I   ++ L+GP S+IGR +V+H++P      G  L  S
Sbjct:   17 IFFSQEGDGPTTVTGSISGLKPGLHGFHVHALGDTTNGCMSTGPHFNPVGKEHGAPEDEDRHAGDLGNVTAGEDGVVNVNITDSQIPLAGPHSIIGRAVVVHADPDDLGKGGHELSKS 134          
BLAST of EY680407 vs. ExPASy Swiss-Prot
Match: SODC_ZANAE (Superoxide dismutase [Cu-Zn] OS=Zantedeschia aethiopica GN=SODCC PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.357e-13
Identity = 38/104 (36.54%), Postives = 60/104 (57.69%), Query Frame = 3
Query:  414 ISFTQEGNGTTTVEGNISGVTPGDHALVIHTYGNVNNVWITTGAPFKPAGTK-----------GVIDNITVDVDGTATFKIY-GKVALSGPDSVIGRGLVLHSN 689
            + F QEG G TT+ G++SG+ PG H   +H  G+  N  ++TG  F PAG +           G + N+TV  DGT  F +   ++ L+G +SV+GR +V+H++
Sbjct:   18 VFFAQEGEGPTTITGSLSGLKPGLHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDGNRHAGDLGNVTVGEDGTVNFTVTDSQIPLTGLNSVVGRAVVVHAD 121          
BLAST of EY680407 vs. ExPASy Swiss-Prot
Match: SODC2_ORYSJ (Superoxide dismutase [Cu-Zn] 2 OS=Oryza sativa subsp. japonica GN=SODCC2 PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 2.141e-12
Identity = 38/105 (36.19%), Postives = 59/105 (56.19%), Query Frame = 3
Query:  414 ISFTQEGNGTTTVEGNISGVTPGDHALVIHTYGNVNNVWITTGAPFKPAGTK-----------GVIDNITVDVDGTATFKIY-GKVALSGPDSVIGRGLVLHSNP 692
            I F+QEG+G T+V G++SG+ PG H   +H  G+  N  ++TG  F P G +           G + NIT   DG A   +   ++ L+G  S+IGR +V+H++P
Sbjct:   18 IFFSQEGDGPTSVTGSVSGLKPGLHGFHVHALGDTTNGCMSTGPHFNPTGKEHGAPQDENRHAGDLGNITAGADGVANVNVSDSQIPLTGAHSIIGRAVVVHADP 122          
BLAST of EY680407 vs. ExPASy Swiss-Prot
Match: SODC_SOLCS (Superoxide dismutase [Cu-Zn] OS=Solidago canadensis var. scabra GN=SODCC PE=2 SV=3)

HSP 1 Score: 71.2478 bits (173), Expect = 8.134e-12
Identity = 41/106 (38.68%), Postives = 58/106 (54.72%), Query Frame = 3
Query:  414 ISFTQEGNGT-TTVEGNISGVTPGDHALVIHTYGNVNNVWITTGAPFKPAGT-----------KGVIDNITVDVDGTATFKIYGK-VALSGPDSVIGRGLVLHSNP 692
            I F+QE  G  TTV G++SG+ PG H   +H  G+  N  ++TG  + P G             G + N+TV  DGTA F I  K + L G  S+IGR +V+H++P
Sbjct:   18 IFFSQEAEGAPTTVTGDLSGLKPGPHGFHVHALGDTTNGCMSTGPHYNPHGKDHGAPDDEHRHAGDLGNVTVGEDGTAKFTIVDKQIPLIGAQSIIGRAVVVHADP 123          
BLAST of EY680407 vs. ExPASy Swiss-Prot
Match: SODC_XIPGL (Superoxide dismutase [Cu-Zn] OS=Xiphias gladius GN=sod1 PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 1.062e-11
Identity = 41/114 (35.96%), Postives = 59/114 (51.75%), Query Frame = 3
Query:  414 ISFTQEGNGTTTVEGNI-SGVTPGDHALVIHTYGNVNNVWITTGAPFKPAGTK-----------GVIDNITVDVDGTATFKIYGKVALSGPDSVIGRGLVLHSNPQSNPGPGSN 719
            + F QEGN     +G I  G+TPG+H   +H +G+  N  I+ G  F PA  K           G + N+T D +G A   I  K++L+GP S+IGR +V+H     + G G N
Sbjct:   19 VYFEQEGNANAVGKGIILKGLTPGEHGFHVHGFGDNTNGCISAGPHFNPASKKHAGPKDEDRHVGDLGNVTADANGVAKIDITDKISLTGPYSIIGRTMVIHEK-ADDLGRGGN 131          
BLAST of EY680407 vs. ExPASy Swiss-Prot
Match: SODCP_PINSY (Superoxide dismutase [Cu-Zn], chloroplastic (Fragment) OS=Pinus sylvestris GN=SODCP PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.388e-11
Identity = 39/102 (38.24%), Postives = 56/102 (54.90%), Query Frame = 3
Query:  414 ISFTQEGNGTTTVEGNISGVTPGDHALVIHTYGNVNNVWITTGAPFKP-----------AGTKGVIDNITVDVDGTATFKIY-GKVALSGPDSVIGRGLVLH 683
            ++ +QE NG TTV+  ++G+TPG H   +H +G+  N  ++TG+ F P               G + NI    DG A   I   ++ LSGPDSVIGR LV+H
Sbjct:    6 VTLSQEDNGPTTVKVRLTGLTPGKHGFHLHEFGDTTNGCMSTGSHFNPKKLTHGAPEDDVRHAGDLGNIVAGSDGVAEATIVDNQIPLSGPDSVIGRALVVH 107          
BLAST of EY680407 vs. ExPASy Swiss-Prot
Match: SODCP_VITVI (Superoxide dismutase [Cu-Zn], chloroplastic OS=Vitis vinifera GN=SODCP PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.367e-11
Identity = 38/102 (37.25%), Postives = 58/102 (56.86%), Query Frame = 3
Query:  414 ISFTQEGNGTTTVEGNISGVTPGDHALVIHTYGNVNNVWITTGAPFKPAGT-----------KGVIDNITVDVDGTATFKIYG-KVALSGPDSVIGRGLVLH 683
            ++ +QE +G TTV   I+G+TPG+H   +H +G+  N  ++TGA F P G             G + NI  + +G A   I   ++ LSGP++VIGR LV+H
Sbjct:   77 VTLSQEDDGPTTVSVRITGLTPGNHGFHLHEFGDTTNGCMSTGAHFNPNGMTHGAPEDDVRHAGDLGNIIANAEGVAEATIVDTQIPLSGPNAVIGRALVVH 178          
BLAST of EY680407 vs. ExPASy Swiss-Prot
Match: SODC_BRUPA (Superoxide dismutase [Cu-Zn] OS=Brugia pahangi GN=SODC PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.037e-11
Identity = 45/113 (39.82%), Postives = 58/113 (51.33%), Query Frame = 3
Query:  414 ISFTQEGNGT-TTVEGNISGVTPGDHALVIHTYGNVNNVWITTGAPFKPAGTK-----------GVIDNITVDVDGTATFKIYGK-VALSGPDSVIGRGLVLHSNPQSNPGPG 713
            I F QE  G+ TT+ G I G+TPG H   +H YG+  N  I+ G  F P               G + NI    DGTA   I  K V L GP+S+IGR LV+H++ Q + G G
Sbjct:   18 IRFKQEKEGSPTTISGEIKGLTPGLHGFHVHQYGDTTNGCISAGPHFNPYNKTHGGPTDEMRHVGDLGNIVAGADGTAHIDISDKHVQLLGPNSIIGRSLVVHAD-QDDLGKG 129          
The following BLAST results are available for this feature:
BLAST of EY680407 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
SODC_PANGI1.482e-1338.14Superoxide dismutase [Cu-Zn] OS=Panax ginseng GN=S... [more]
SODC5_MAIZE1.936e-1334.75Superoxide dismutase [Cu-Zn] 4AP OS=Zea mays GN=SO... [more]
SODC2_MAIZE2.529e-1336.44Superoxide dismutase [Cu-Zn] 2 OS=Zea mays GN=SODC... [more]
SODC_ZANAE7.357e-1336.54Superoxide dismutase [Cu-Zn] OS=Zantedeschia aethi... [more]
SODC2_ORYSJ2.141e-1236.19Superoxide dismutase [Cu-Zn] 2 OS=Oryza sativa sub... [more]
SODC_SOLCS8.134e-1238.68Superoxide dismutase [Cu-Zn] OS=Solidago canadensi... [more]
SODC_XIPGL1.062e-1135.96Superoxide dismutase [Cu-Zn] OS=Xiphias gladius GN... [more]
SODCP_PINSY1.388e-1138.24Superoxide dismutase [Cu-Zn], chloroplastic (Fragm... [more]
SODCP_VITVI2.367e-1137.25Superoxide dismutase [Cu-Zn], chloroplastic OS=Vit... [more]
SODC_BRUPA4.037e-1139.82Superoxide dismutase [Cu-Zn] OS=Brugia pahangi GN=... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-010-G04-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY680407 ID=EY680407; Name=EY680407; organism=Citrus sinensis; type=EST; length=859bp
CCACGCGTCCGAAAATTTTTTCTTTTTTATTTTAAAAATTATGTCTGCAC
CATCCTAATTTTATCATATGTACATTTAATCATAAAAAAATTTTGATATA
TTTTCTACAAACATTATATTAGTCATTAGACAACTAATTTACCACTAACA
CTATTAGAATTTGTAAGAGAATCTAAGTAAAAAAGACTATTTAACCCTTT
AATGCATTAAAAGACTATTTTATCCTTTGAAACTTTGAATATATATATAT
ATATATTCCTTCTGATGGTGTTGTTTCTATGTTTTTTGGGAGTTTACGAT
TTTTATACTCTTGACCATTCACTTAAATGTAATATTTTATATTGCTCAGA
TCACGTAGCACAATGGTGAATGCAACTGTAGTTCTTACTGGAGTTGTGGG
TCGTGTTGGAACTATTTCCTTTACCCAGGAAGGAAATGGTACAACAACCG
TGGAAGGAAACATCTCTGGTGTCACTCCTGGTGATCATGCACTGGTTATT
CACACTTACGGAAACGTAAATAATGTTTGGATAACAACTGGAGCCCCTTT
TAAACCTGCTGGAACTAAAGGTGTTATAGACAACATCACTGTTGATGTTG
ACGGTACTGCTACTTTTAAAATTTACGGGAAGGTTGCTCTTTCTGGACCA
GATTCTGTTATTGGAAGGGGTCTTGTACTCCACTCAAATCCCCAGTCAAA
TCCCGGGCCCGGGAGTAACTTGGGGTGGTCATGGGTCTCCATGGATGGAA
ATGGGCTCCCCTCCCAAACATAAAAAAAAACTTTGGAACTGAGGGTTCCT
GGGGGTTAAAATATTTTAAAAAAAAAAAAAAAAATGGTGGGCAGAAAAGC
TGGGGCTTA
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