EY680385

Overview
NameEY680385
Unique NameEY680385
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length861
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY680385 vs. ExPASy Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1)

HSP 1 Score: 378.637 bits (971), Expect = 2.396e-104
Identity = 186/243 (76.54%), Postives = 205/243 (84.36%), Query Frame = 3
Query:   51 FVGKAVNLAPSGNELSNG------GRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVPGIVTGRGPLKNLADQFAQP 761
            FVG+AV    S NE          GRI+MR+T   +  S   WYG DR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHCRWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWACQVVLMG VEGYR+ GGPLGE  D +YPGG+FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV  IVTG+GP++NL+D    P
Sbjct:   11 FVGQAVG--KSQNEFIRKVGNFGEGRITMRRTVKSAPQS--IWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHINDP 249          
BLAST of EY680385 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1)

HSP 1 Score: 377.096 bits (967), Expect = 6.971e-104
Identity = 178/221 (80.54%), Postives = 196/221 (88.69%), Query Frame = 3
Query:   99 NGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVPGIVTGRGPLKNLADQFAQP 761
            NGGR +MR+T   +  S   WYG DR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHCRWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+LIHAQSILA+WA QVVLMG +EGYR+ GGPLGE  D +YPGG+FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV  IVTG+GP++NL D  A P
Sbjct:   31 NGGRATMRRTVKSAPQS--IWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAVWASQVVLMGLIEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADP 249          
BLAST of EY680385 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1)

HSP 1 Score: 376.326 bits (965), Expect = 1.189e-103
Identity = 181/219 (82.65%), Postives = 197/219 (89.95%), Query Frame = 3
Query:  105 GRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVPGIVTGRGPLKNLADQFAQP 761
            GR SMR+T  K+V   S WYG DR K+LGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGC+FPELL++NGV+FGEAVWFKAGAQIFSEGGLDYLGNP+L+HAQSILAIWA QVVLMG +EGYR+ GGPLGE  DPLYPGG+FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV  IVTG+GP++NLAD  A P
Sbjct:   32 GRFSMRRT-VKAVPQ-SIWYGADRPKFLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCIFPELLSKNGVQFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWATQVVLMGLIEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHIADP 248          
BLAST of EY680385 vs. ExPASy Swiss-Prot
Match: CB25_SOLLC (Chlorophyll a-b binding protein 5, chloroplastic (Fragment) OS=Solanum lycopersicum GN=CAB5 PE=2 SV=1)

HSP 1 Score: 375.941 bits (964), Expect = 1.553e-103
Identity = 178/220 (80.91%), Postives = 196/220 (89.09%), Query Frame = 3
Query:  102 GGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVPGIVTGRGPLKNLADQFAQP 761
            GGR++MR+T   +  S   WYG DR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHCRWAMLGALGCVFPE+L++NGV FGEAVWFKAG+QIFSEGGLDYLGNP+LIHAQSILAIWA QVVLMG VEGYR+ GGPLGE  D +YPGG+FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV  IVTG+GP++NL+D  A P
Sbjct:    4 GGRVTMRRTVKSAPQS--IWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVTFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWASQVVLMGFVEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHIADP 221          
BLAST of EY680385 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1)

HSP 1 Score: 374.4 bits (960), Expect = 4.519e-103
Identity = 181/234 (77.35%), Postives = 201/234 (85.90%), Query Frame = 3
Query:   75 APSGNEL-----SNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVPGIVTGRGPLKNLADQFAQP 761
            AP  +EL      +GGRI+MR+T   +  S   WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPE+L++NGVKFGEAVWFKAGAQIFSEGGLDYLGNP+L+HAQSILAIWA QVVLMG VEGYR+ GGPLGE  D +YPGG+FDPLGLADDP+ FAELKVKE+KNGRLAMFSMFGFFV  IVTG+GP++NL D  A P
Sbjct:   16 APRRDELVRRVGDSGGRITMRRTVKSAPQS--IWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRVGGGPLGEGLDKVYPGGAFDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADP 247          
BLAST of EY680385 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1)

HSP 1 Score: 374.4 bits (960), Expect = 4.519e-103
Identity = 181/234 (77.35%), Postives = 201/234 (85.90%), Query Frame = 3
Query:   75 APSGNEL-----SNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVPGIVTGRGPLKNLADQFAQP 761
            AP  +EL      +GGRI+MR+T   +  S   WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPE+L++NGVKFGEAVWFKAGAQIFSEGGLDYLGNP+L+HAQSILAIWA QVVLMG VEGYR+ GGPLGE  D +YPGG+FDPLGLADDP+ FAELKVKE+KNGRLAMFSMFGFFV  IVTG+GP++NL D  A P
Sbjct:   16 APRRDELVRRVGDSGGRITMRRTVKSAPQS--IWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRVGGGPLGEGLDKVYPGGAFDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADP 247          
BLAST of EY680385 vs. ExPASy Swiss-Prot
Match: CB22_CUCSA (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 372.474 bits (955), Expect = 5.127e-103
Identity = 176/190 (92.63%), Postives = 183/190 (96.32%), Query Frame = 3
Query:  192 PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVPGIVTGRGPLKNLADQFAQP 761
            PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH  WAMLGALGCVFPELL+RNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDP+YPGGSFDPLGLADDPEAFAELKVKE+KNGRLAMFSMFGFFV  IVTG+GPL+NLAD  A P
Sbjct:    1 PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSTWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 190          

HSP 2 Score: 23.8682 bits (50), Expect = 5.127e-103
Identity = 10/21 (47.62%), Postives = 12/21 (57.14%), Query Frame = 1
Query:  748 NLPNPVNKKAWA*PPQFCPRK 810
            +L +PVN  AWA    F P K
Sbjct:  186 HLADPVNNNAWAYATNFVPGK 206          
BLAST of EY680385 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1)

HSP 1 Score: 373.244 bits (957), Expect = 1.007e-102
Identity = 178/220 (80.91%), Postives = 194/220 (88.18%), Query Frame = 3
Query:  102 GGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVPGIVTGRGPLKNLADQFAQP 761
            GGR +MR+T   +  S   WYG DR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHCRWAMLGALGCVFPE+L++NGV FGEAVWFKAG+QIFSEGGLDYLGNP+LIHAQSILAIWA QVVLMG VEGYR+ GGPLGE  D +YPGG+FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV  IVTG+GP++NL D  A P
Sbjct:   32 GGRATMRRTVKSAPQS--IWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVTFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAAQVVLMGFVEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHVADP 249          
BLAST of EY680385 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1)

HSP 1 Score: 371.703 bits (953), Expect = 2.929e-102
Identity = 183/235 (77.87%), Postives = 197/235 (83.83%), Query Frame = 3
Query:   72 LAPSGNEL-----SNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVPGIVTGRGPLKNLADQFAQP 761
            L P  NEL     +   RI+MR+T   +  S   WYGPDR KYLGPFS   PSYLTGEFPGDYGWDTA +SADPETFAKNRELEVIHCRWAMLGALGCVFPELLA+NG+KFGEAVWFKAGAQIFSEGGLDY GNP+LIHAQSILAIWACQVVLMG +EGYR+ GG LGE  DPL PGG+FDPLGLADDPEA AELKVKEIKNGRLAMFSMFGFFV  IVTG+GP++NL D  A P
Sbjct:   18 LRPQQNELVKKVGTAQARITMRRTVRSAPES--IWYGPDRPKYLGPFSEGTPSYLTGEFPGDYGWDTAAVSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGLKFGEAVWFKAGAQIFSEGGLDYAGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGTLGEGLDPLLPGGAFDPLGLADDPEACAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADP 250          
BLAST of EY680385 vs. ExPASy Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1)

HSP 1 Score: 367.466 bits (942), Expect = 5.524e-101
Identity = 175/218 (80.28%), Postives = 192/218 (88.07%), Query Frame = 3
Query:  108 RISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVPGIVTGRGPLKNLADQFAQP 761
            R +MR+T   +  S   WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGC FPELL +NGVKFGEAVWFKAG+QIF+EGGLDYLGNP+LIHAQSILAIWA QVVLMG VEGYR+ GGPLGE  DPLYPGG+FDPLGLADDP++FAELKVKE+KNGRLAMFSMFGFFV  IVTG+GP++NL D  A P
Sbjct:   34 RFTMRRTVKSAPES--IWYGPDRPKYLGPFSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPELLEKNGVKFGEAVWFKAGSQIFAEGGLDYLGNPNLIHAQSILAIWATQVVLMGFVEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPDSFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIQNLYDHVADP 249          
The following BLAST results are available for this feature:
BLAST of EY680385 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
CB24_SOLLC2.396e-10476.54Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB23_TOBAC6.971e-10480.54Chlorophyll a-b binding protein 36, chloroplastic ... [more]
CB21_LEMGI1.189e-10382.65Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB25_SOLLC1.553e-10380.91Chlorophyll a-b binding protein 5, chloroplastic (... [more]
CB23_ORYSJ4.519e-10377.35Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_ORYSI4.519e-10377.35Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB22_CUCSA5.127e-10392.63Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB26_PETSP1.007e-10280.91Chlorophyll a-b binding protein 37, chloroplastic ... [more]
CB21_PINTH2.929e-10277.87Chlorophyll a-b binding protein type I, chloroplas... [more]
CB215_PEA5.524e-10180.28Chlorophyll a-b binding protein 215, chloroplastic... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-010-E06-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY680385 ID=EY680385; Name=EY680385; organism=Citrus sinensis; type=EST; length=861bp
CTCCATTAAATTCCGCAATGGCAACCTCAACAATGGCTCTCTCCTCATCA
TTCGTCGGCAAGGCTGTGAACCTTGCCCCTTCAGGCAATGAGCTAAGCAA
TGGTGGCCGCATCTCCATGCGTAAAACCGGGAGCAAGTCTGTTTCTTCAG
GTAGCCCGTGGTACGGCCCGGACAGAGTCAAGTACTTGGGCCCATTCTCT
GGCGAGCCCCCAAGCTACTTGACCGGTGAGTTCCCTGGCGACTACGGTTG
GGACACAGCCGGGCTTTCAGCTGACCCAGAAACCTTTGCCAAGAACCGTG
AACTCGAAGTCATCCACTGCAGATGGGCCATGTTGGGAGCTCTTGGATGC
GTCTTCCCGGAGCTCTTGGCCCGCAACGGAGTCAAGTTCGGTGAGGCCGT
GTGGTTCAAGGCGGGAGCTCAGATCTTCAGCGAGGGCGGGCTTGACTACT
TGGGAAACCCAAGCTTGATCCACGCCCAGAGCATCTTGGCCATCTGGGCT
TGCCAGGTGGTCTTGATGGGAGCCGTTGAGGGTTACAGAATTGCTGGAGG
GCCGCTCGGTGAAGTGACTGACCCATTGTACCCAGGTGGCAGCTTTGATC
CATTGGGTTTGGCTGATGACCCGGAGGCTTTTGCTGAGCTCAAGGTTAAG
GAAATCAAGAATGGAAGGTTGGCTATGTTCTCCATGTTTGGGTTCTTCGT
TCCAGGCATTGTCACCGGGAGGGGACCGTTAAAAAATTTGGCCGACCAAT
TTGCCCAACCCTGTCAACAAAAAGGCCTGGGCCTAACCCCCCCAATTTTG
TCCCCGGAAAAGGAACTTTCGGTTGAAAAATTTAAAAAACGGGAAAATTG
GAAATTAAAAA
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