EY680312

Overview
NameEY680312
Unique NameEY680312
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length868
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY680312 vs. ExPASy Swiss-Prot
Match: TPIC_SECCE (Triosephosphate isomerase, chloroplastic OS=Secale cereale PE=1 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 4.183e-64
Identity = 127/240 (52.92%), Postives = 160/240 (66.67%), Query Frame = 3
Query:   75 KFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIHGRFCKWNKLQRIGQPNLM*NGFLVGGNFPKARNF 794
            KFFVGGNWKCNGT E + K+VS LN A                      KS L     V+AQN W+ KGGAFTGE+SAE LV++   WVILGHSERR ++ E ++F+G K AYALS+ LKV+AC+GE LE+RE+G T  V  +Q KA A+ I++W NVV+AYEPVWAIGTGKVA+P QAQEVHA +R WLK NVSA+VA++ RII+G          + +   + +GFLVGG   K  +F
Sbjct:   48 KFFVGGNWKCNGTKESISKLVSDLNAATLESDVDVVVAPPFIYIDQV--KSSLTDRIEVSAQNTWIGKGGAFTGEISAEQLVDIGCQWVILGHSERRHVIGEDDEFIGKKAAYALSQNLKVMACIGELLEEREAGKTFDVCFKQMKAFADNITDWTNVVIAYEPVWAIGTGKVASPEQAQEVHAAVRDWLKTNVSADVASTVRIIYGGSVNAANCAELAKKEDI-DGFLVGGASLKGPDF 284          
BLAST of EY680312 vs. ExPASy Swiss-Prot
Match: TPIC_ARATH (Triosephosphate isomerase, chloroplastic OS=Arabidopsis thaliana GN=TIM PE=1 SV=1)

HSP 1 Score: 242.276 bits (617), Expect = 2.712e-63
Identity = 129/264 (48.86%), Postives = 162/264 (61.36%), Query Frame = 3
Query:    3 TRPLVFSSRFHRQTKQNSIVVMARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIHGRFCKWNKLQRIGQPNLM*NGFLVGGNFPKARNF 794
            TR +  SS  HR  +    +  + KFFVGGNWKCNGT + + K++S LN A                      KS L     ++ QN WV KGGAFTGE+S E L +L   WVILGHSERR ++ E ++F+G K AYALS GL VIAC+GE LE+RE+G T  V   Q KA A+ + +WDN+V+AYEPVWAIGTGKVA+P QAQEVH  +R WLK NVS EVA+ TRII+G          + +   + +GFLVGG   K   F
Sbjct:   41 TRLVSSSSSSHRSPRGVVAMAGSGKFFVGGNWKCNGTKDSIAKLISDLNSATLEADVDVVVSPPFVYIDQV--KSSLTDRIDISGQNSWVGKGGAFTGEISVEQLKDLGCKWVILGHSERRHVIGEKDEFIGKKAAYALSEGLGVIACIGEKLEEREAGKTFDVCFAQLKAFADAVPSWDNIVVAYEPVWAIGTGKVASPQQAQEVHVAVRGWLKKNVSEEVASKTRIIYGGSVNGGNSAELAKEEDI-DGFLVGGASLKGPEF 301          
BLAST of EY680312 vs. ExPASy Swiss-Prot
Match: TPIC_FRAAN (Triosephosphate isomerase, chloroplastic OS=Fragaria ananassa GN=TPI PE=2 SV=1)

HSP 1 Score: 239.965 bits (611), Expect = 1.346e-62
Identity = 126/249 (50.60%), Postives = 160/249 (64.26%), Query Frame = 3
Query:   54 SIVVMAR--KFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIHGRFCKWNKLQRIGQPNLM*NGFLVGGNFPKARNF 794
            ++V MA   KFFVGGNWKCNGT + + K+VS LN A+                     KS L     ++ QN WV KGGAFTGE+S E L ++   WVILGHSERR ++ E + F+G K AYAL+ GL VIAC+GE LE+RE+G T  V  EQ KA A+ + +W+N+V+AYEPVWAIGTGKVA+P QAQEVH  +R+WLK NVSAEVA+ TRII+G          + +   + +GFLVGG   K   F
Sbjct:   55 AVVAMAGTGKFFVGGNWKCNGTKDLISKLVSDLNSAKLEPDVDVVVAPPFLYLDQV--KSSLTDRIEISGQNSWVAKGGAFTGEISVEQLKDIGRKWVILGHSERRHVIGEDDQFIGKKAAYALNEGLGVIACIGEKLEEREAGKTFDVCYEQLKAFADAVPSWENIVVAYEPVWAIGTGKVASPQQAQEVHVAVREWLKKNVSAEVASKTRIIYGGSVNGGNSAELAKEEDI-DGFLVGGASLKGPEF 300          
BLAST of EY680312 vs. ExPASy Swiss-Prot
Match: TPIS_XENTR (Triosephosphate isomerase OS=Xenopus tropicalis GN=tpi1 PE=2 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 2.626e-58
Identity = 119/235 (50.64%), Postives = 154/235 (65.53%), Query Frame = 3
Query:   69 ARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIHGRFCKWNKLQRIG-QPNLM*NGFLVGG 770
            +RKFFVGGNWK NG  + + ++++TLN  +                     K  L + F V+AQNC+    GAFTGE+S  M+ +    WVILGHSERR +  ES++ +G KVA+ALS  + VI C+GE L+QRE+G T  VV EQTKAIA+ + +W  VVLAYEPVWAIGTGK ATP QAQEVH +LR+WLK NVS +VA S RII+G        + +G QP++  +GFLVGG
Sbjct:    3 SRKFFVGGNWKMNGDKKSLTELINTLNSGKISADTEVVCGAPTIYLDFARQK--LDAKFAVSAQNCYKVAKGAFTGEISPAMIKDCGATWVILGHSERRHVFGESDELIGQKVAHALSENVGVIGCIGEKLDQREAGITEKVVFEQTKAIADNVKDWSKVVLAYEPVWAIGTGKTATPEQAQEVHKKLREWLKTNVSEDVAKSVRIIYGGSVTGGTCKELGAQPDI--DGFLVGG 233          
BLAST of EY680312 vs. ExPASy Swiss-Prot
Match: TPIS_CULTA (Triosephosphate isomerase OS=Culex tarsalis GN=Tpi PE=1 SV=2)

HSP 1 Score: 224.942 bits (572), Expect = 4.480e-58
Identity = 121/236 (51.27%), Postives = 153/236 (64.83%), Query Frame = 3
Query:   66 MARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIH-GRFCKWNKLQRIGQPNLM*NGFLVGG 770
            M RKF VGGNWK NG    +  +   L                         +S L     VAAQNC+    GAFTGE+S  ML +L+I WVILGHSERRA+  ES++ + DKVA+AL+ GLKVIAC+GETL++RE+G T AV   QTKAIA+K+ +W NVV+AYEPVWAIGTGK A+P QAQEVHA LRKW  +NVSA+V+A+ RI + G     N  +   +P++  +GFLVGG
Sbjct:    1 MGRKFCVGGNWKMNGDKASIADLCKVLTTGPLNADTEVVVGCPAPYLTLA--RSQLPDSVCVAAQNCYKVPKGAFTGEISPAMLKDLNIGWVILGHSERRAIFGESDELIADKVAHALAEGLKVIACIGETLQEREAGQTEAVCFRQTKAIADKVKDWSNVVIAYEPVWAIGTGKTASPEQAQEVHAALRKWFTENVSADVSAAIRIQYGGSVTAANCRELAAKPDI--DGFLVGG 232          
BLAST of EY680312 vs. ExPASy Swiss-Prot
Match: TPIS_RABIT (Triosephosphate isomerase OS=Oryctolagus cuniculus GN=TPI1 PE=1 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 1.702e-57
Identity = 122/239 (51.05%), Postives = 153/239 (64.02%), Query Frame = 3
Query:   69 ARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIH-----GRFCKWNKLQRIGQPNLM*NGFLVGG 770
            +RKFFVGGNWK NG  + + ++++TLN A+                     K  L     VAAQNC+    GAFTGE+S  M+ +    WV+LGHSERR +  ES++ +G KVA+ALS GL VIAC+GE L++RE+G T  VV EQTK IA+ + +W  VVLAYEPVWAIGTGK ATP QAQEVH +LR WLK NVS  VA STRII+     G  CK    +   QP++  +GFLVGG
Sbjct:    3 SRKFFVGGNWKMNGRKKNLGELITTLNAAKVPADTEVVCAPPTAYIDFARQK--LDPKIAVAAQNCYKVTNGAFTGEISPGMIKDCGATWVVLGHSERRHVFGESDELIGQKVAHALSEGLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKSNVSDAVAQSTRIIYGGSVTGATCK----ELASQPDV--DGFLVGG 233          
BLAST of EY680312 vs. ExPASy Swiss-Prot
Match: TPIS_CANFA (Triosephosphate isomerase OS=Canis familiaris GN=TPI1 PE=1 SV=3)

HSP 1 Score: 222.631 bits (566), Expect = 2.223e-57
Identity = 121/239 (50.63%), Postives = 154/239 (64.44%), Query Frame = 3
Query:   69 ARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIH-----GRFCKWNKLQRIGQPNLM*NGFLVGG 770
            +RKFFVGGNWK NG  + + ++++TLN A+                     K  L +   VAAQNC+    GAFTGE+S  M+ +    WV+LGHSERR +  ES++ +G KVA+AL+ GL VIAC+GE L++RE+G T  VV EQTK IA+ + +W  VVLAYEPVWAIGTGK ATP QAQEVH +LR WLK NVS  VA STRII+     G  CK    +   QP++  +GFLVGG
Sbjct:    4 SRKFFVGGNWKMNGRKKNLGELITTLNAAKVPADTEVVCAPPTAYIDFARQK--LDAKIAVAAQNCYKVTNGAFTGEISPGMIKDCGATWVVLGHSERRHVFGESDELIGQKVAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKSNVSDAVAQSTRIIYGGSVTGATCK----ELASQPDV--DGFLVGG 234          
BLAST of EY680312 vs. ExPASy Swiss-Prot
Match: TPIS_MACMU (Triosephosphate isomerase OS=Macaca mulatta GN=TPI1 PE=3 SV=2)

HSP 1 Score: 222.246 bits (565), Expect = 2.904e-57
Identity = 121/239 (50.63%), Postives = 152/239 (63.60%), Query Frame = 3
Query:   69 ARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIH-----GRFCKWNKLQRIGQPNLM*NGFLVGG 770
            +RKFFVGGNWK NG  + + +++ TLN A+                     K  L     VAAQNC+    GAFTGE+S  M+ +    WV+LGHSERR +  ES++ +G KVA+AL+ GL VIAC+GE L++RE+G T  VV EQTK IA+ + +W  VVLAYEPVWAIGTGK ATP QAQEVH +LR WLK NVS  VA STRII+     G  CK    +   QP++  +GFLVGG
Sbjct:    4 SRKFFVGGNWKMNGRKQNLGELIGTLNAAKVPADTEVVCAPPTAYIDFARQK--LDPKIAVAAQNCYKVTNGAFTGEISPGMIKDCGATWVVLGHSERRHVFGESDELIGQKVAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKSNVSEAVAQSTRIIYGGSVTGATCK----ELASQPDV--DGFLVGG 234          
BLAST of EY680312 vs. ExPASy Swiss-Prot
Match: TPIS_MACFA (Triosephosphate isomerase OS=Macaca fascicularis GN=TPI1 PE=2 SV=3)

HSP 1 Score: 222.246 bits (565), Expect = 2.904e-57
Identity = 121/239 (50.63%), Postives = 152/239 (63.60%), Query Frame = 3
Query:   69 ARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIH-----GRFCKWNKLQRIGQPNLM*NGFLVGG 770
            +RKFFVGGNWK NG  + + +++ TLN A+                     K  L     VAAQNC+    GAFTGE+S  M+ +    WV+LGHSERR +  ES++ +G KVA+AL+ GL VIAC+GE L++RE+G T  VV EQTK IA+ + +W  VVLAYEPVWAIGTGK ATP QAQEVH +LR WLK NVS  VA STRII+     G  CK    +   QP++  +GFLVGG
Sbjct:    4 SRKFFVGGNWKMNGRKQNLGELIGTLNAAKVPADTEVVCAPPTAYIDFARQK--LDPKIAVAAQNCYKVTNGAFTGEISPGMIKDCGATWVVLGHSERRHVFGESDELIGQKVAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKSNVSEAVAQSTRIIYGGSVTGATCK----ELASQPDV--DGFLVGG 234          
BLAST of EY680312 vs. ExPASy Swiss-Prot
Match: TPIS_PONAB (Triosephosphate isomerase OS=Pongo abelii GN=TPI1 PE=2 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 3.792e-57
Identity = 121/239 (50.63%), Postives = 152/239 (63.60%), Query Frame = 3
Query:   69 ARKFFVGGNWKCNGTSEEVKKIVSTLNEAEXXXXXXXXXXXXXXXXXXXXXKSLLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSRGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIH-----GRFCKWNKLQRIGQPNLM*NGFLVGG 770
            +RKFFVGGNWK NG  + + +++ TLN A+                     K  L     VAAQNC+    GAFTGE+S  M+ +    WV+LGHSERR +  ES++ +G KVA+AL+ GL VIAC+GE L++RE+G T  VV EQTK IA+ + +W  VVLAYEPVWAIGTGK ATP QAQEVH +LR WLK NVS  VA STRII+     G  CK    +   QP++  +GFLVGG
Sbjct:    4 SRKFFVGGNWKMNGRKQSLGELIGTLNAAKVPADTEVVCAPPTAYIDFARQK--LDPKIAVAAQNCYKVTNGAFTGEISPGMIKDYGATWVVLGHSERRHVFGESDELIGQKVAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKSNVSDAVAQSTRIIYGGSVTGATCK----ELASQPDV--DGFLVGG 234          
The following BLAST results are available for this feature:
BLAST of EY680312 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIC_SECCE4.183e-6452.92Triosephosphate isomerase, chloroplastic OS=Secale... [more]
TPIC_ARATH2.712e-6348.86Triosephosphate isomerase, chloroplastic OS=Arabid... [more]
TPIC_FRAAN1.346e-6250.60Triosephosphate isomerase, chloroplastic OS=Fragar... [more]
TPIS_XENTR2.626e-5850.64Triosephosphate isomerase OS=Xenopus tropicalis GN... [more]
TPIS_CULTA4.480e-5851.27Triosephosphate isomerase OS=Culex tarsalis GN=Tpi... [more]
TPIS_RABIT1.702e-5751.05Triosephosphate isomerase OS=Oryctolagus cuniculus... [more]
TPIS_CANFA2.223e-5750.63Triosephosphate isomerase OS=Canis familiaris GN=T... [more]
TPIS_MACMU2.904e-5750.63Triosephosphate isomerase OS=Macaca mulatta GN=TPI... [more]
TPIS_MACFA2.904e-5750.63Triosephosphate isomerase OS=Macaca fascicularis G... [more]
TPIS_PONAB3.792e-5750.63Triosephosphate isomerase OS=Pongo abelii GN=TPI1 ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-009-G02-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY680312 ID=EY680312; Name=EY680312; organism=Citrus sinensis; type=EST; length=868bp
CCACGCGTCCGCTCGTATTTTCGTCTCGCTTTCATCGCCAAACCAAACAA
AATTCAATCGTCGTCATGGCCCGCAAATTCTTCGTCGGCGGCAACTGGAA
ATGCAATGGGACATCTGAGGAAGTGAAGAAGATTGTTTCTACATTGAATG
AAGCTGAAGTTCCTTCTGAGGATGTTGTGGAGGTTGTTGTAAGCCCTCCG
TTTGTGTTTCTTCCTTTGGTCAAGAGTCTGTTGCGGTCTGATTTCCATGT
TGCCGCTCAAAATTGCTGGGTTCGCAAAGGTGGTGCTTTTACCGGGGAAG
TTAGTGCTGAGATGCTTGTCAACTTGAGCATTCCTTGGGTCATTCTTGGT
CATTCTGAAAGAAGAGCTCTTTTGAATGAGTCAAATGATTTTGTTGGAGA
TAAAGTTGCTTATGCACTTTCTCGAGGCTTGAAAGTCATTGCTTGTGTTG
GAGAGACTCTGGAACAGCGAGAATCAGGATCTACAGTGGCTGTTGTGGCT
GAACAAACAAAAGCAATCGCAGAAAAAATATCCAACTGGGACAATGTTGT
GTTGGCTTATGAGCCAGTTTGGGCCATTGGTACCGGGAAGGTTGCAACCC
CTGCTCAGGCTCAGGAAGTCCATGCTGAACTGAGGAAATGGCTTAAAGAC
AATGTCAGTGCTGAAGTTGCAGCATCAACTAGAATCATCCACGGGAGGTT
CTGTAAATGGAACAAATTGCAAAGAATTGGGCAGCCCAACCTGATGTAAA
ATGGTTTTTTGGTTGGGGGGAACTTCCCTAAAGCCCGGAATTTCTTCCAT
ATTTTTCAAGTCGGCCCCCAATGGAAAAAAAAATTTAAATTAAAAACCAA
ACCACCCCGGGTTTGGCT
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