EY680265

Overview
NameEY680265
Unique NameEY680265
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length931
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY680265 vs. ExPASy Swiss-Prot
Match: GLYC_CAEEL (Serine hydroxymethyltransferase OS=Caenorhabditis elegans GN=mel-32 PE=1 SV=2)

HSP 1 Score: 162.155 bits (409), Expect = 3.964e-39
Identity = 83/135 (61.48%), Postives = 96/135 (71.11%), Query Frame = 3
Query:   12 LDSDNWGVNVQPYSCTSANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAQIPGLVWGG 416
            LD   WGVNVQP S + ANFAVYT ++    RIMGLD P GGHL+HG+ TP  +KVSA S FF+S PYKV+P TG IDY+KLE+ AM +RPK +I G S Y R  DY RFR+IA K GA LM DMA I GLV  G
Sbjct:  132 LDPAKWGVNVQPLSGSPANFAVYTAIVGSNGRIMGLDLPDGGHLTHGFFTPA-RKVSATSEFFQSLPYKVDPTTGLIDYDKLEQNAMLFRPKAIIAGVSCYARHLDYERFRKIATKAGAYLMSDMAHISGLVAAG 265          
BLAST of EY680265 vs. ExPASy Swiss-Prot
Match: GLYC_CAEBR (Serine hydroxymethyltransferase OS=Caenorhabditis briggsae GN=mel-32 PE=3 SV=3)

HSP 1 Score: 160.999 bits (406), Expect = 8.831e-39
Identity = 84/135 (62.22%), Postives = 96/135 (71.11%), Query Frame = 3
Query:   12 LDSDNWGVNVQPYSCTSANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAQIPGLVWGG 416
            LD   WGVNVQ  S + ANFAVYT L+    RIMGLD P GGHL+HG+ TP  +KVSA S FF+S PYKV+ Q+G IDY+KLEE AM +RPK+LI G S Y R  DY RFR+IA K GA LM DMA I GLV  G
Sbjct:  136 LDPAKWGVNVQSLSGSPANFAVYTALVGANGRIMGLDLPDGGHLTHGFFTPA-RKVSATSEFFQSMPYKVDAQSGLIDYDKLEENAMLFRPKVLIAGVSCYARHLDYERFRKIATKAGAYLMSDMAHISGLVAAG 269          
BLAST of EY680265 vs. ExPASy Swiss-Prot
Match: GLYM_FLAPR (Serine hydroxymethyltransferase 1, mitochondrial OS=Flaveria pringlei PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 1.153e-38
Identity = 79/138 (57.25%), Postives = 98/138 (71.01%), Query Frame = 3
Query:    9 RLDSDNWGVNVQPYSCTSANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAQIPGLVWGGGI 422
            RLD   WGVNVQP S + ANF VYT LL   DRIM LD P GGHLSHGY T   KK+SA SIFFE+ PY++N  TGYIDY++LE+ A  +RPK+++ G S+Y R +DY R R++ DK  A+++ DMA I GLV  G I
Sbjct:  135 RLDPAKWGVNVQPLSGSPANFHVYTALLKAHDRIMALDLPHGGHLSHGYQTDT-KKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYARIRKVCDKQKAIMLADMAHISGLVAAGVI 271          
BLAST of EY680265 vs. ExPASy Swiss-Prot
Match: GLYC_CANGA (Serine hydroxymethyltransferase, cytosolic OS=Candida glabrata GN=SHM2 PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.506e-38
Identity = 81/134 (60.45%), Postives = 96/134 (71.64%), Query Frame = 3
Query:   21 DNWGVNVQPYSCTSANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAQIPGLVWGGGI 422
            D WGVNVQ  S + AN  VY  L+ P +R+MGL  P GGHLSHGY T   +K+SA S +FESFPY+VNP+TG IDY+ LE+ A+ YRPKIL+ G S+Y R  DY R R+IADKCGA LM DMA I GLV  G I
Sbjct:  100 DRWGVNVQTLSGSPANLQVYQALMKPHERLMGLYLPDGGHLSHGYATEN-RKISAVSTYFESFPYRVNPETGIIDYDTLEKNAILYRPKILVAGTSAYCRLIDYKRMREIADKCGAYLMVDMAHISGLVAAGVI 232          
BLAST of EY680265 vs. ExPASy Swiss-Prot
Match: GLYM_SOLTU (Serine hydroxymethyltransferase, mitochondrial OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 3.356e-38
Identity = 78/138 (56.52%), Postives = 99/138 (71.74%), Query Frame = 3
Query:    9 RLDSDNWGVNVQPYSCTSANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAQIPGLVWGGGI 422
            RLD   WGVNVQP S + ANF VYT LL P +RIM LD P GGHLSHGY T   KK+SA SIFFE+ PY+++  TGYIDY++LE+ A  +RPK+++ G S+Y R +DY R R++ +K  A+L+ DMA I GLV  G I
Sbjct:  135 RLDPAKWGVNVQPLSGSPANFQVYTALLKPHERIMALDLPHGGHLSHGYQTDT-KKISAVSIFFETMPYRLDESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYDRIRKVCNKQKAILLADMAHISGLVAAGVI 271          
BLAST of EY680265 vs. ExPASy Swiss-Prot
Match: GLYC_YEAST (Serine hydroxymethyltransferase, cytosolic OS=Saccharomyces cerevisiae GN=SHM2 PE=1 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 4.383e-38
Identity = 78/134 (58.21%), Postives = 96/134 (71.64%), Query Frame = 3
Query:   21 DNWGVNVQPYSCTSANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAQIPGLVWGGGI 422
            D WGVNVQ  S + AN  VY  ++ P +R+MGL  P GGHLSHGY T   +K+SA S +FESFPY+VNP+TG IDY+ LE+ A+ YRPK+L+ G S+Y R  DY R R+IADKCGA LM DMA I GL+  G I
Sbjct:  100 DKWGVNVQTLSGSPANLQVYQAIMKPHERLMGLYLPDGGHLSHGYATEN-RKISAVSTYFESFPYRVNPETGIIDYDTLEKNAILYRPKVLVAGTSAYCRLIDYKRMREIADKCGAYLMVDMAHISGLIAAGVI 232          
BLAST of EY680265 vs. ExPASy Swiss-Prot
Match: GLYM_ARATH (Serine hydroxymethyltransferase, mitochondrial OS=Arabidopsis thaliana GN=SHM1 PE=1 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 7.476e-38
Identity = 75/133 (56.39%), Postives = 98/133 (73.68%), Query Frame = 3
Query:    9 RLDSDNWGVNVQPYSCTSANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAQIPGLV 407
            RLD + WGVNVQP S + ANF VYT LL P +RIM LD P GGHLSHGY T   KK+SA SIFFE+ PY+++  TGYIDY+++E+ A  +RPK+++ G S+Y R +DY R R++ +K  AV++ DMA I GLV
Sbjct:  134 RLDPEKWGVNVQPLSGSPANFHVYTALLKPHERIMALDLPHGGHLSHGYQTDT-KKISAVSIFFETMPYRLDESTGYIDYDQMEKSATLFRPKLIVAGASAYARLYDYARIRKVCNKQKAVMLADMAHISGLV 265          
BLAST of EY680265 vs. ExPASy Swiss-Prot
Match: GLYM_RABIT (Serine hydroxymethyltransferase, mitochondrial OS=Oryctolagus cuniculus GN=SHMT2 PE=1 SV=2)

HSP 1 Score: 155.606 bits (392), Expect = 3.710e-37
Identity = 79/132 (59.85%), Postives = 94/132 (71.21%), Query Frame = 3
Query:   12 LDSDNWGVNVQPYSCTSANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAQIPGLV 407
            LD   WGVNVQPYS + AN A YT LL P DRIMGLD P GGHL+HGY +   K+VSA SIFFES PYK+NPQTG IDYE+L   A  +RP+++I G S+Y R  DY R R++ D+  A L+ DMA I GLV
Sbjct:  129 LDPAQWGVNVQPYSGSPANLAAYTALLQPHDRIMGLDLPDGGHLTHGYMSDV-KRVSATSIFFESMPYKLNPQTGLIDYEQLALTARLFRPRLIIAGTSAYARLIDYARMREVCDEVKAHLLADMAHISGLV 259          
BLAST of EY680265 vs. ExPASy Swiss-Prot
Match: GLYC_ASHGO (Serine hydroxymethyltransferase, cytosolic OS=Ashbya gossypii GN=SHM2 PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 4.846e-37
Identity = 79/134 (58.96%), Postives = 95/134 (70.90%), Query Frame = 3
Query:   21 DNWGVNVQPYSCTSANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAQIPGLVWGGGI 422
            D WGVNVQ  S + AN  VY  L+ P +R+MGL  P GGHLSHGY T   +K+SA S +FESFPY+V+P+TG IDY+ LE+ A+ YRPKIL+ G S+Y R  DY R R+IADK GA LM DMA I GLV  G I
Sbjct:  100 DRWGVNVQSLSGSPANLQVYQALMKPHERLMGLHLPDGGHLSHGYQTET-RKISAVSTYFESFPYRVDPETGIIDYDTLEKNAVLYRPKILVAGTSAYCRLIDYKRMREIADKVGAYLMVDMAHISGLVAAGVI 232          
BLAST of EY680265 vs. ExPASy Swiss-Prot
Match: GLYC_SCHPO (Probable serine hydroxymethyltransferase, cytosolic OS=Schizosaccharomyces pombe GN=shm2 PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 8.265e-37
Identity = 72/137 (52.55%), Postives = 94/137 (68.61%), Query Frame = 3
Query:   12 LDSDNWGVNVQPYSCTSANFAVYTGLLLPGDRIMGLDSPSGGHLSHGYHTPGGKKVSAASIFFESFPYKVNPQTGYIDYEKLEEKAMDYRPKILICGGSSYPREWDYGRFRQIADKCGAVLMCDMAQIPGLVWGGGI 422
            LD + WGVNVQP+S + AN   Y  ++ P DR+MGLD P GGHLSHG+ TP  K +SA S +F + PY VN +TG IDY+ LE+ A+ +RPK+++ G S+Y R  DY R R+I + C A L+CDMA I GLV  G I
Sbjct:   98 LDGEKWGVNVQPHSGSPANLQAYQAVMKPHDRLMGLDLPHGGHLSHGFSTPQ-KAISAVSTYFSTMPYNVNKETGIIDYDSLEKAAIQFRPKVIVAGASAYARLVDYKRMRKITEMCNAYLLCDMAHISGLVAAGVI 233          
The following BLAST results are available for this feature:
BLAST of EY680265 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYC_CAEEL3.964e-3961.48Serine hydroxymethyltransferase OS=Caenorhabditis ... [more]
GLYC_CAEBR8.831e-3962.22Serine hydroxymethyltransferase OS=Caenorhabditis ... [more]
GLYM_FLAPR1.153e-3857.25Serine hydroxymethyltransferase 1, mitochondrial O... [more]
GLYC_CANGA1.506e-3860.45Serine hydroxymethyltransferase, cytosolic OS=Cand... [more]
GLYM_SOLTU3.356e-3856.52Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYC_YEAST4.383e-3858.21Serine hydroxymethyltransferase, cytosolic OS=Sacc... [more]
GLYM_ARATH7.476e-3856.39Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYM_RABIT3.710e-3759.85Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYC_ASHGO4.846e-3758.96Serine hydroxymethyltransferase, cytosolic OS=Ashb... [more]
GLYC_SCHPO8.265e-3752.55Probable serine hydroxymethyltransferase, cytosoli... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-009-C01-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY680265 ID=EY680265; Name=EY680265; organism=Citrus sinensis; type=EST; length=931bp
CCCGCGTCCGTCTTGATAGCGATAATTGGGGAGTCAACGTTCAGCCATAT
TCATGTACCTCTGCAAATTTCGCCGTCTATACGGGTCTTTTGTTGCCTGG
GGATAGAATTATGGGGTTAGATTCTCCTTCTGGAGGGCATTTGAGTCACG
GCTACCATACACCAGGAGGGAAGAAGGTTTCAGCTGCTTCAATATTCTTT
GAGAGTTTTCCTTATAAAGTGAATCCGCAAACTGGCTATATTGATTACGA
AAAGCTGGAGGAGAAGGCCATGGATTATAGACCCAAGATTTTGATTTGTG
GTGGGAGTTCATATCCCAGAGAGTGGGATTATGGGAGGTTTAGGCAGATT
GCAGATAAGTGTGGTGCAGTTTTGATGTGTGATATGGCTCAAATTCCTGG
GCTCGTGTGGGGGGGGGGAATTGCACAGTCCATTTGACTAATGGAGATAT
CGGGACTTCCCCACACTCCAAAACACTCTGTCAAGGTCCTAGCCGAAGAG
CACCTTTTCGTGAAGAACAGGAAAAAACAACAGCGAAACAGCAGAGTAAC
GGCGGGGCAGAGACAACGGAGGAGGGCGCTGAGAATGCAAAACGGAGACG
AGCGGCTGCGGGGCGCGGACGAGGAGAGAAGACGAGGGGCGCCGGCGTCG
CCACCGCCGGCCGCCCCTACGCCTCCCGAGCGGGGGTGCCCCCGCGCCTC
CACTGACAGGAGCCACGACAGACGCAAAGCGGACCAGAACGAGACCACAA
CGAAAGAGTAAACCGGGATCACCAACACACAGAGACGCAATGCAAGCGAG
GACAAAGGAAGGCGGCCTACACGCACAGTAAGCGCAGCGGTGGAACCAGC
AGCAGAGAGGGAAGGAAGTACAGGGACCACGGATGAGAGCCCCCCCGGAC
AAGGGAGACGAGCGCGCGGCGCCGACGGAAC
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