EY680262

Overview
NameEY680262
Unique NameEY680262
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length499
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY680262 vs. ExPASy Swiss-Prot
Match: CB22_PINSY (Chlorophyll a-b binding protein type 2 member 2 (Fragment) OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 1.523e-29
Identity = 62/66 (93.94%), Postives = 63/66 (95.45%), Query Frame = 2
Query:   11 ADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 208
            ADDPEA AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENL DHLADPV NNAWAYATNFVPGK
Sbjct:   85 ADDPEAKAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPVANNAWAYATNFVPGK 150          
BLAST of EY680262 vs. ExPASy Swiss-Prot
Match: CB22_PETSP (Chlorophyll a-b binding protein 22L, chloroplastic OS=Petunia sp. GN=CAB22L PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 1.523e-29
Identity = 60/66 (90.91%), Postives = 63/66 (95.45%), Query Frame = 2
Query:   11 ADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 208
            A+DPEAFAELKVKE KNGRLAMFSMFGFF+QAIVTGKGPLENLADHL DPVNNNAW+YATNFVP K
Sbjct:  202 AEDPEAFAELKVKETKNGRLAMFSMFGFFIQAIVTGKGPLENLADHLVDPVNNNAWSYATNFVPRK 267          
BLAST of EY680262 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 3.394e-29
Identity = 59/66 (89.39%), Postives = 63/66 (95.45%), Query Frame = 2
Query:   11 ADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 208
            ADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct:  198 ADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANNAWAYATNFVPGK 263          
BLAST of EY680262 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 3.394e-29
Identity = 59/66 (89.39%), Postives = 63/66 (95.45%), Query Frame = 2
Query:   11 ADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 208
            ADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct:  198 ADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANNAWAYATNFVPGK 263          
BLAST of EY680262 vs. ExPASy Swiss-Prot
Match: CB21_WHEAT (Chlorophyll a-b binding protein, chloroplastic OS=Triticum aestivum GN=WHAB1.6 PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 2.200e-28
Identity = 59/66 (89.39%), Postives = 63/66 (95.45%), Query Frame = 2
Query:   11 ADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 208
            A+ P+AFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE+LADH+ADPVNNNAW  ATNFVPGK
Sbjct:  201 AERPQAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEDLADHIADPVNNNAWLIATNFVPGK 266          
BLAST of EY680262 vs. ExPASy Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 4.901e-28
Identity = 56/66 (84.85%), Postives = 64/66 (96.97%), Query Frame = 2
Query:   11 ADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 208
            ADDP++FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP++NL DH+ADPV NNAWA+ATNFVPG+
Sbjct:  200 ADDPDSFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIQNLYDHVADPVANNAWAFATNFVPGQ 265          
BLAST of EY680262 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 9.242e-27
Identity = 57/65 (87.69%), Postives = 58/65 (89.23%), Query Frame = 2
Query:   11 ADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 205
            ADDP  FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL DHL +PV NNAW YAT FVPG
Sbjct:  200 ADDPTTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANNAWVYATKFVPG 264          
BLAST of EY680262 vs. ExPASy Swiss-Prot
Match: CB2_PHYPA (Chlorophyll a-b binding protein, chloroplastic OS=Physcomitrella patens PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 2.059e-26
Identity = 57/65 (87.69%), Postives = 58/65 (89.23%), Query Frame = 2
Query:   11 ADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 205
            ADDP+ FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL DHLADPV NNAWAYA    PG
Sbjct:  203 ADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLNDHLADPVANNAWAYAPTSPPG 267          
BLAST of EY680262 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 3.512e-26
Identity = 56/65 (86.15%), Postives = 57/65 (87.69%), Query Frame = 2
Query:   11 ADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 205
            ADDP  FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL DHL DPV NNAW +AT F PG
Sbjct:  203 ADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLFDHLDDPVANNAWVFATKFAPG 267          
BLAST of EY680262 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 3.287e-24
Identity = 53/64 (82.81%), Postives = 57/64 (89.06%), Query Frame = 2
Query:   11 ADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVP 202
            ADDP+ FAELKVKEIKNGRLAMFS FGFFVQAIVTGKGP++NLADHLADP  NNA+A AT F P
Sbjct:  191 ADDPDTFAELKVKEIKNGRLAMFSCFGFFVQAIVTGKGPIQNLADHLADPGTNNAFAAATKFTP 254          
The following BLAST results are available for this feature:
BLAST of EY680262 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
CB22_PINSY1.523e-2993.94Chlorophyll a-b binding protein type 2 member 2 (F... [more]
CB22_PETSP1.523e-2990.91Chlorophyll a-b binding protein 22L, chloroplastic... [more]
CB23_ORYSJ3.394e-2989.39Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_ORYSI3.394e-2989.39Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_WHEAT2.200e-2889.39Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB215_PEA4.901e-2884.85Chlorophyll a-b binding protein 215, chloroplastic... [more]
CB23_SOLLC9.242e-2787.69Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB2_PHYPA2.059e-2687.69Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_HORVU3.512e-2686.15Chlorophyll a-b binding protein of LHCII type III,... [more]
CB2_CHLMO3.287e-2482.81Chlorophyll a-b binding protein of LHCII type I, c... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-009-B10-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY680262 ID=EY680262; Name=EY680262; organism=Citrus sinensis; type=EST; length=499bp
CCACGCGTCCGCTGATGACCCGGAGGCTTTTGCTGAGCTCAAGGTTAAGG
AAATCAAGAATGGAAGGTTGGCTATGTTCTCCATGTTTGGTTTCTTCGTT
CAGGCCATTGTCACCGGCAAGGGACCGTTAGAGAACTTGGCCGACCACTT
GGCCGACCCTGTCAACAACAATGCCTGGGCCTACGCCACCAACTTTGTCC
CCGGAAAGTGAGCTTCGGTTGATAACATTAGTAGCGTGGAAATTGGAATT
GAGAGTGATTGGTTATTGATGTGACTCTATTTCAACTTGCAAAACATGTG
AATTATGTAATGTACTGCTACTACCAGTTTGAGGGGATTGTATTTTCATT
CAATCTCTTGTCGCACGGTTCTAGTTCTAGTTCCTCCTCCTTACAGGTTG
TGCCAGAATCTAGTTACAAGTTTACATCACAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAG
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