EY680239

Overview
NameEY680239
Unique NameEY680239
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length859
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY680239 vs. ExPASy Swiss-Prot
Match: RBS2_SPIOL (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Spinacia oleracea GN=RBCS2 PE=1 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.990e-34
Identity = 61/83 (73.49%), Postives = 73/83 (87.95%), Query Frame = 3
Query:   12 PCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 260
            PCLEFE + G+VYREHH+SPGYYDGRYWTMWKLPM+GCTD  QVL E+ E +KEYP++F+RIIGFD+ RQVQC+SF+A KP G
Sbjct:   97 PCLEFETDHGFVYREHHNSPGYYDGRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYKPAG 179          
BLAST of EY680239 vs. ExPASy Swiss-Prot
Match: RBS1_SOLTU (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Solanum tuberosum GN=RBCS-1 PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.990e-34
Identity = 64/83 (77.11%), Postives = 72/83 (86.75%), Query Frame = 3
Query:   12 PCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 260
            PCLEFE E G+VYRE+H SPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K YP +++RIIGFDN RQVQCISF+A KP G
Sbjct:   98 PCLEFETEHGFVYRENHKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVQECKKSYPQAWIRIIGFDNVRQVQCISFIAYKPEG 180          
BLAST of EY680239 vs. ExPASy Swiss-Prot
Match: RBS_FLATR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Flaveria trinervia GN=RBCS PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.599e-34
Identity = 62/83 (74.70%), Postives = 75/83 (90.36%), Query Frame = 3
Query:   12 PCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 260
            PCLEFELE G+VYRE+ SSPGYYDGRYWTMWKLPM+GCTD+ QV+KE+ E +KEYP +++RIIGFDN RQVQC+SF+A+KP G
Sbjct:   90 PCLEFELEHGFVYRENASSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCVSFIASKPTG 172          
BLAST of EY680239 vs. ExPASy Swiss-Prot
Match: RBS3_AMAHP (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Amaranthus hypochondriacus GN=RBCS3 PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.599e-34
Identity = 63/83 (75.90%), Postives = 71/83 (85.54%), Query Frame = 3
Query:   12 PCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 260
            PC+EFELE  +VYRE+H SPGY DGRYWTMWKLPMYGCTD  QVL EV E +K YP +F+RIIGFDNKRQVQC+SF+A KPPG
Sbjct:   97 PCIEFELEHPFVYRENHRSPGYQDGRYWTMWKLPMYGCTDPAQVLNEVEEAKKAYPSAFIRIIGFDNKRQVQCVSFIAFKPPG 179          
BLAST of EY680239 vs. ExPASy Swiss-Prot
Match: RBS2_PETHY (Ribulose bisphosphate carboxylase small chain SSU11A, chloroplastic OS=Petunia hybrida GN=RBCS PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.599e-34
Identity = 63/83 (75.90%), Postives = 74/83 (89.16%), Query Frame = 3
Query:   12 PCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 260
            PCLEFE E G+VYRE+H+SP YYDGRYWTMWKLPM+GCTDATQVL E+ E +K YP++++RIIGFDN RQVQCISF+A KPPG
Sbjct:   97 PCLEFETEHGFVYREYHASPRYYDGRYWTMWKLPMFGCTDATQVLGELQEAKKAYPNAWIRIIGFDNVRQVQCISFIAYKPPG 179          
BLAST of EY680239 vs. ExPASy Swiss-Prot
Match: RBS1_PETHY (Ribulose bisphosphate carboxylase small chain SSU8, chloroplastic OS=Petunia hybrida GN=RBCS PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.599e-34
Identity = 63/83 (75.90%), Postives = 74/83 (89.16%), Query Frame = 3
Query:   12 PCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 260
            PCLEFE E G+VYRE+H+SP YYDGRYWTMWKLPM+GCTDATQVL E+ E +K YP++++RIIGFDN RQVQCISF+A KPPG
Sbjct:   97 PCLEFETEHGFVYREYHASPRYYDGRYWTMWKLPMFGCTDATQVLGELQEAKKAYPNAWIRIIGFDNVRQVQCISFIAYKPPG 179          
BLAST of EY680239 vs. ExPASy Swiss-Prot
Match: RBS_HORVU (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 5.789e-34
Identity = 63/83 (75.90%), Postives = 75/83 (90.36%), Query Frame = 3
Query:   12 PCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 260
            PCLEF  + G+++REH++SPGYYDGRYWTMWKLPM+GCTDATQVL EV EV+KEYP ++VRIIGFDN RQVQC+SF+A KPPG
Sbjct:   86 PCLEFS-KVGFIFREHNASPGYYDGRYWTMWKLPMFGCTDATQVLNEVEEVKKEYPDAYVRIIGFDNMRQVQCVSFIAFKPPG 167          
BLAST of EY680239 vs. ExPASy Swiss-Prot
Match: RBS2_WHEAT (Ribulose bisphosphate carboxylase small chain PW9, chloroplastic OS=Triticum aestivum PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 5.789e-34
Identity = 63/83 (75.90%), Postives = 75/83 (90.36%), Query Frame = 3
Query:   12 PCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 260
            PCLEF  + G+V+REH+SSPGYYDGRYWTMWKLPM+GCTDATQVL EV EV+KEYP ++VR+IGFDN RQVQC+SF+A +PPG
Sbjct:   87 PCLEFS-KVGFVFREHNSSPGYYDGRYWTMWKLPMFGCTDATQVLNEVEEVKKEYPDAYVRVIGFDNMRQVQCVSFIAFRPPG 168          
BLAST of EY680239 vs. ExPASy Swiss-Prot
Match: RBS7_FLAPR (Ribulose bisphosphate carboxylase small chain 7, chloroplastic OS=Flaveria pringlei GN=RBCS7 PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 7.561e-34
Identity = 62/83 (74.70%), Postives = 74/83 (89.16%), Query Frame = 3
Query:   12 PCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 260
            PCLEFELE G+VYRE+  SPGYYDGRYWTMWKLPM+GCTD+ QV+KE+ E +KEYP +++RIIGFDN RQVQCISF+A+KP G
Sbjct:   90 PCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCISFIASKPDG 172          
BLAST of EY680239 vs. ExPASy Swiss-Prot
Match: RBS5_FLAPR (Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Flaveria pringlei GN=RBCS5 PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 7.561e-34
Identity = 62/83 (74.70%), Postives = 74/83 (89.16%), Query Frame = 3
Query:   12 PCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 260
            PCLEFELE G+VYRE+  SPGYYDGRYWTMWKLPM+GCTD+ QV+KE+ E +KEYP +++RIIGFDN RQVQCISF+A+KP G
Sbjct:   90 PCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCISFIASKPDG 172          
The following BLAST results are available for this feature:
BLAST of EY680239 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
RBS2_SPIOL1.990e-3473.49Ribulose bisphosphate carboxylase small chain 2, c... [more]
RBS1_SOLTU1.990e-3477.11Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS_FLATR2.599e-3474.70Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS3_AMAHP2.599e-3475.90Ribulose bisphosphate carboxylase small chain 3, c... [more]
RBS2_PETHY2.599e-3475.90Ribulose bisphosphate carboxylase small chain SSU1... [more]
RBS1_PETHY2.599e-3475.90Ribulose bisphosphate carboxylase small chain SSU8... [more]
RBS_HORVU5.789e-3475.90Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS2_WHEAT5.789e-3475.90Ribulose bisphosphate carboxylase small chain PW9,... [more]
RBS7_FLAPR7.561e-3474.70Ribulose bisphosphate carboxylase small chain 7, c... [more]
RBS5_FLAPR7.561e-3474.70Ribulose bisphosphate carboxylase small chain 5, c... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-008-H08-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY680239 ID=EY680239; Name=EY680239; organism=Citrus sinensis; type=EST; length=859bp
CCACGCGTCCGCCCTGCTTGGAATTCGAGTTGGAGAAAGGATGGGTGTAC
CGTGAGCACCACAGCTCACCAGGATACTACGATGGACGCTACTGGACAAT
GTGGAAGCTGCCCATGTATGGGTGCACAGATGCAACCCAGGTTTTGAAGG
AGGTTGGGGAGGTCCAGAAGGAATACCCACATTCATTCGTCCGAATTATC
GGATTTGACAACAAGCGTCAAGTGCAGTGCATCAGTTTCCTTGCTGCCAA
GCCACCAGGCGTCTAGGTTCCCAATTAAATTTGTGTAACCACCCATGCAA
TATTGTTGATTATTATTATGTGTAACCCCCATAATGATCATTCGATCAAT
GGGGGTTCGGTTTGCGTTTAATTTGTACTTAGGCTGCTGTTGCTGCTGCT
CAAACTTTTTTGGTTTTCTCCCCGACTTTGGCTTTTTTTTTTTATATATA
TTTTAATAATTGANAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAACAAACAAAAAAAACCAACAAAACAATAAANAACAA
CAAACAAAAAAAAAAAACAAGGGGGCGCCCCCTTAAAAGAAACAAACTTA
AAAATACCGGGGGAGGGAACGACAAAACTCTTTTATAAGGGCACACCCAA
ATATAATTCCGGGGGCGCCTTTTTTAAACCGCCGGAGGGGGGGAAAACCC
CGGGGGTTCCCCCAATTTAATCGCCCTTGGCCACAACCCCCCCCTTTTCC
CCCGGGGGGGAAAATACAAAAAAAGCCCCCCCCCCATCTCCCCTCCCCCA
AAATTTGCCCCCCCCCGATGGGGACAAAGGGAACCCCCCCCTTTTTCGCC
CCCTATAAC
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