EY680236

Overview
NameEY680236
Unique NameEY680236
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length885
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY680236 vs. ExPASy Swiss-Prot
Match: CB2_PHYPA (Chlorophyll a-b binding protein, chloroplastic OS=Physcomitrella patens PE=3 SV=1)

HSP 1 Score: 297.36 bits (760), Expect = 7.392e-80
Identity = 151/223 (67.71%), Postives = 176/223 (78.92%), Query Frame = 1
Query:   94 RISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEMTDPLYPRWQL*SIGVGLDDPEAFC*NSRLKENQEWKVAYVLHVWFSSF----KGFVTRKGTVKKTWADHL 750
            R++MR+T SKS  S + WYG DR K+LGPFSGE PSYL GEF GDYGWDTAGLS+DPETFA+NRELEVIH RWAMLGALGC+ PELLA++GVKFGEAVWFKAGAQIFSEGGLDYLGNPSL+HAQSILAIWACQVVLMGAVEGYR+AGGPLGE+TDP+YP      +G+  DDP+ F    ++KE +  ++A      FS F    +  VT KG ++    DHL
Sbjct:   35 RVTMRRTVSKSAGSDTIWYGADRPKFLGPFSGETPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVTDPIYPGGSFDPLGLA-DDPDTFA-ELKVKEIKNGRLA-----MFSMFGFFVQAIVTGKGPLENL-NDHL 249          
BLAST of EY680236 vs. ExPASy Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1)

HSP 1 Score: 294.278 bits (752), Expect = 6.258e-79
Identity = 158/250 (63.20%), Postives = 185/250 (74.00%), Query Frame = 1
Query:   31 SSFVGKAVNLAPSGNELSNG------GRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEMTDPLYPRWQL*SIGVGLDDPEAFC*NSRLKENQEWKVAYVLHVWFSSF----KGFVTRKGTVKKTWADHL 750
            S+FVG+AV    S NE          GRI+MR+T   +  S   WYG DR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHCRWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWACQVVLMG VEGYR+ GGPLGE  D +YP      +G+  DDPEAF    ++KE +  ++A      FS F    +  VT KG ++   +DH+
Sbjct:    9 SAFVGQAVG--KSQNEFIRKVGNFGEGRITMRRTVKSAPQS--IWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYRVGGGPLGEGLDKIYPGGAFDPLGLA-DDPEAFA-ELKVKEIKNGRLA-----MFSMFGFFVQAIVTGKGPIENL-SDHI 246          
BLAST of EY680236 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1)

HSP 1 Score: 291.197 bits (744), Expect = 5.297e-78
Identity = 159/250 (63.60%), Postives = 182/250 (72.80%), Query Frame = 1
Query:   28 SSSFVGKAVNLAPSGNEL-----SNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEMTDPLYPRWQL*SIGVGLDDPEAFC*NSRLKENQEWKVAYVLHVWFSSF----KGFVTRKGTVKKTWADHL 750
            SSS  G+ + L P  NEL     +   RI+MR+T   +  S   WYGPDR KYLGPFS   PSYLTGEFPGDYGWDTA +SADPETFAKNRELEVIHCRWAMLGALGCVFPELLA+NG+KFGEAVWFKAGAQIFSEGGLDY GNP+LIHAQSILAIWACQVVLMG +EGYR+ GG LGE  DPL P      +G+  DDPEA C   ++KE +  ++A      FS F    +  VT KG ++  + DHL
Sbjct:    9 SSSLAGQTL-LRPQQNELVKKVGTAQARITMRRTVRSAPES--IWYGPDRPKYLGPFSEGTPSYLTGEFPGDYGWDTAAVSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGLKFGEAVWFKAGAQIFSEGGLDYAGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGTLGEGLDPLLPGGAFDPLGLA-DDPEA-CAELKVKEIKNGRLA-----MFSMFGFFVQAIVTGKGPIENLY-DHL 247          
BLAST of EY680236 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1)

HSP 1 Score: 290.041 bits (741), Expect = 1.180e-77
Identity = 155/250 (62.00%), Postives = 183/250 (73.20%), Query Frame = 1
Query:   31 SSFVGKAVNLAPSGNELS------NGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEMTDPLYPRWQL*SIGVGLDDPEAFC*NSRLKENQEWKVAYVLHVWFSSF----KGFVTRKGTVKKTWADHL 750
            S+F G+      S NEL       NGGR +MR+T   +  S   WYG DR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHCRWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+LIHAQSILA+WA QVVLMG +EGYR+ GGPLGE  D +YP      +G+  DDPEAF    ++KE +  ++A      FS F    +  VT KG ++  + DH+
Sbjct:    9 SAFAGQTA--LKSQNELVRKIGSFNGGRATMRRTVKSAPQS--IWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAVWASQVVLMGLIEGYRVGGGPLGEGLDKIYPGGAFDPLGLA-DDPEAFA-ELKVKEIKNGRLA-----MFSMFGFFVQAIVTGKGPIENLF-DHV 246          
BLAST of EY680236 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1)

HSP 1 Score: 288.886 bits (738), Expect = 2.629e-77
Identity = 155/250 (62.00%), Postives = 185/250 (74.00%), Query Frame = 1
Query:   28 SSSFVGKAVNLAPSGNEL-----SNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEMTDPLYPRWQL*SIGVGLDDPEAFC*NSRLKENQEWKVAYVLHVWFSSF----KGFVTRKGTVKKTWADHL 750
            ++SF+G A    P  +EL      +GGRI+MR+T   +  S   WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPE+L++NGVKFGEAVWFKAGAQIFSEGGLDYLGNP+L+HAQSILAIWA QVVLMG VEGYR+ GGPLGE  D +YP      +G+  DDP+ F    ++KE +  ++A      FS F    +  VT KG ++  + DH+
Sbjct:    9 TTSFLGTA----PRRDELVRRVGDSGGRITMRRTVKSAPQS--IWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRVGGGPLGEGLDKVYPGGAFDPLGLA-DDPDTFA-ELKVKELKNGRLA-----MFSMFGFFVQAIVTGKGPIENLF-DHV 244          
BLAST of EY680236 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1)

HSP 1 Score: 288.886 bits (738), Expect = 2.629e-77
Identity = 155/250 (62.00%), Postives = 185/250 (74.00%), Query Frame = 1
Query:   28 SSSFVGKAVNLAPSGNEL-----SNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEMTDPLYPRWQL*SIGVGLDDPEAFC*NSRLKENQEWKVAYVLHVWFSSF----KGFVTRKGTVKKTWADHL 750
            ++SF+G A    P  +EL      +GGRI+MR+T   +  S   WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPE+L++NGVKFGEAVWFKAGAQIFSEGGLDYLGNP+L+HAQSILAIWA QVVLMG VEGYR+ GGPLGE  D +YP      +G+  DDP+ F    ++KE +  ++A      FS F    +  VT KG ++  + DH+
Sbjct:    9 TTSFLGTA----PRRDELVRRVGDSGGRITMRRTVKSAPQS--IWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRVGGGPLGEGLDKVYPGGAFDPLGLA-DDPDTFA-ELKVKELKNGRLA-----MFSMFGFFVQAIVTGKGPIENLF-DHV 244          
BLAST of EY680236 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1)

HSP 1 Score: 287.73 bits (735), Expect = 5.857e-77
Identity = 151/224 (67.41%), Postives = 174/224 (77.68%), Query Frame = 1
Query:   91 GRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEMTDPLYPRWQL*SIGVGLDDPEAFC*NSRLKENQEWKVAYVLHVWFSSF----KGFVTRKGTVKKTWADHL 750
            GR SMR+T  K+V   S WYG DR K+LGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGC+FPELL++NGV+FGEAVWFKAGAQIFSEGGLDYLGNP+L+HAQSILAIWA QVVLMG +EGYR+ GGPLGE  DPLYP      +G+  DDPEAF    ++KE +  ++A      FS F    +  VT KG ++   ADH+
Sbjct:   32 GRFSMRRT-VKAVPQ-SIWYGADRPKFLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCIFPELLSKNGVQFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWATQVVLMGLIEGYRVGGGPLGEGLDPLYPGGAFDPLGLA-DDPEAFA-ELKVKEIKNGRLA-----MFSMFGFFVQAIVTGKGPIENL-ADHI 245          
BLAST of EY680236 vs. ExPASy Swiss-Prot
Match: CB25_SOLLC (Chlorophyll a-b binding protein 5, chloroplastic (Fragment) OS=Solanum lycopersicum GN=CAB5 PE=2 SV=1)

HSP 1 Score: 287.345 bits (734), Expect = 7.649e-77
Identity = 148/225 (65.78%), Postives = 173/225 (76.89%), Query Frame = 1
Query:   88 GGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEMTDPLYPRWQL*SIGVGLDDPEAFC*NSRLKENQEWKVAYVLHVWFSSF----KGFVTRKGTVKKTWADHL 750
            GGR++MR+T   +  S   WYG DR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHCRWAMLGALGCVFPE+L++NGV FGEAVWFKAG+QIFSEGGLDYLGNP+LIHAQSILAIWA QVVLMG VEGYR+ GGPLGE  D +YP      +G+  DDPEAF    ++KE +  ++A      FS F    +  VT KG ++   +DH+
Sbjct:    4 GGRVTMRRTVKSAPQS--IWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVTFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWASQVVLMGFVEGYRVGGGPLGEGLDKIYPGGAFDPLGLA-DDPEAFA-ELKVKEIKNGRLA-----MFSMFGFFVQAIVTGKGPIENL-SDHI 218          
BLAST of EY680236 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1)

HSP 1 Score: 286.574 bits (732), Expect = 1.305e-76
Identity = 155/250 (62.00%), Postives = 181/250 (72.40%), Query Frame = 1
Query:   31 SSFVGKAVNLAPSGNELSN------GGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEMTDPLYPRWQL*SIGVGLDDPEAFC*NSRLKENQEWKVAYVLHVWFSSF----KGFVTRKGTVKKTWADHL 750
            S+F G+      S NEL        GGR +MR+T   +  S   WYG DR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHCRWAMLGALGCVFPE+L++NGV FGEAVWFKAG+QIFSEGGLDYLGNP+LIHAQSILAIWA QVVLMG VEGYR+ GGPLGE  D +YP      +G+  DDPEAF    ++KE +  ++A      FS F    +  VT KG ++  + DH+
Sbjct:    9 SAFAGQTA--LKSQNELVRKIGSFGGGRATMRRTVKSAPQS--IWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVTFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAAQVVLMGFVEGYRVGGGPLGEGLDKIYPGGAFDPLGLA-DDPEAFA-ELKVKEIKNGRLA-----MFSMFGFFVQAIVTGKGPIENLY-DHV 246          
BLAST of EY680236 vs. ExPASy Swiss-Prot
Match: CB22_CUCSA (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 281.952 bits (720), Expect = 3.214e-75
Identity = 145/195 (74.36%), Postives = 160/195 (82.05%), Query Frame = 1
Query:  178 PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEMTDPLYPRWQL*SIGVGLDDPEAFC*NSRLKENQEWKVAYVLHVWFSSF----KGFVTRKGTVKKTWADHL 750
            PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH  WAMLGALGCVFPELL+RNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGE+TDP+YP      +G+  DDPEAF    ++KE +  ++A      FS F    +  VT KG ++   ADHL
Sbjct:    1 PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSTWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLA-DDPEAFA-ELKVKELKNGRLA-----MFSMFGFFVQAIVTGKGPLENL-ADHL 187          
The following BLAST results are available for this feature:
BLAST of EY680236 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
CB2_PHYPA7.392e-8067.71Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB24_SOLLC6.258e-7963.20Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB21_PINTH5.297e-7863.60Chlorophyll a-b binding protein type I, chloroplas... [more]
CB23_TOBAC1.180e-7762.00Chlorophyll a-b binding protein 36, chloroplastic ... [more]
CB23_ORYSJ2.629e-7762.00Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_ORYSI2.629e-7762.00Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_LEMGI5.857e-7767.41Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB25_SOLLC7.649e-7765.78Chlorophyll a-b binding protein 5, chloroplastic (... [more]
CB26_PETSP1.305e-7662.00Chlorophyll a-b binding protein 37, chloroplastic ... [more]
CB22_CUCSA3.214e-7574.36Chlorophyll a-b binding protein of LHCII type 1 (F... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-008-H04-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY680236 ID=EY680236; Name=EY680236; organism=Citrus sinensis; type=EST; length=885bp
CCACGCGTCCGCCTCACAATGGCTCTCTCCTCATCATTCGTCGGCAAGGC
TGTGAACCTTGCCCCTTCAGGCAATGAGCTAAGCAATGGTGGCCGCATCT
CCATGCGTAAAACCGGGAGCAAGTCTGTTTCTTCAGGTAGCCCGTGGTAC
GGCCCGGACAGAGTCAAGTACTTGGGCCCATTCTCTGGCGAGCCCCCAAG
CTACTTGACCGGTGAGTTCCCTGGCGACTACGGTTGGGACACAGCCGGGC
TTTCAGCTGACCCAGAAACCTTTGCCAAGAACCGTGAACTCGAAGTCATC
CACTGCAGATGGGCCATGTTGGGAGCTCTTGGATGCGTCTTCCCGGAGCT
CTTGGCCCGCAACGGAGTCAAGTTCGGTGAGGCCGTGTGGTTCAAGGCGG
GAGCTCAGATCTTCAGCGAGGGCGGGCTTGACTACTTGGGAAACCCAAGC
TTGATCCACGCCCAGAGCATCTTGGCCATCTGGGCTTGCCAGGTGGTCTT
GATGGGAGCCGTTGAGGGTTACAGAATTGCTGGAGGGCCGCTCGGTGAAA
TGACTGACCCATTGTACCCCAGGTGGCAGCTTTGATCCATTGGGGTTGGG
CTGGATGACCCGGAGGCTTTTTGCTGAAACTCAAGGTTAAAGGAAAATCA
AGAATGGAAGGTGGCCTATGTTCTCCATGTTTGGTTTTCTTCGTTTAAGG
GCTTTGTCACCCGCAAAGGGACCGTTAAAAAAACTTGGGCCGACCACTTG
GGCCAAACCTGGGCAAAACCAATGCCGGGGCCTAAGCCCCCCAAATTTTG
TCCCCCGGAAAAGGGACCTTCCGGTTGAAAAAATTTAAATAACGGGGGAA
AATTGGGAATTTGGAAGGGGATTGGGGTTAATTGG
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