EY680230

Overview
NameEY680230
Unique NameEY680230
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length864
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY680230 vs. ExPASy Swiss-Prot
Match: RK14_CICAR (50S ribosomal protein L14, chloroplastic OS=Cicer arietinum GN=rpl14 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.153e-11
Identity = 41/115 (35.65%), Postives = 67/115 (58.26%), Query Frame = 1
Query:  109 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADL-WPRIASAA 441
            +N ADN+GA+ L  I + G   R      A +GD+++A +KK  P+    R +V+ AVIVR  K  +R +G+ + ++DNA V+++ +G  KG+ I   I +E   L + +I S A
Sbjct:    8 LNVADNSGARELMCIRIIGASNRRY----AYIGDIIVAVIKKAVPNTPFERSEVIRAVIVRTCKELKRSNGIIIKYDDNAAVVIDKEGNPKGTRIFCAIARELRQLNFTKIVSLA 118          
BLAST of EY680230 vs. ExPASy Swiss-Prot
Match: RK14_CARPA (50S ribosomal protein L14, chloroplastic OS=Carica papaya GN=rpl14 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.153e-11
Identity = 41/115 (35.65%), Postives = 68/115 (59.13%), Query Frame = 1
Query:  109 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADL-WPRIASAA 441
            +N ADN+GA+ L  I + G   R      A +GD+++A +K+  P+    R +V+ AVIVR  K  +R +G+ + ++DNA V+++ +G  KG+ I G I +E   L + +I S A
Sbjct:    8 LNVADNSGARELMCIRIIGASNRRY----AHIGDVIVAVIKEAVPNTPLERSEVIRAVIVRTCKELKRNNGMIIRYDDNAAVVIDQEGNPKGTRIFGAIPRELRQLNFTKIVSLA 118          
BLAST of EY680230 vs. ExPASy Swiss-Prot
Match: RK14_ANEMR (50S ribosomal protein L14, plastid OS=Aneura mirabilis GN=rpl14 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.153e-11
Identity = 38/101 (37.62%), Postives = 59/101 (58.42%), Query Frame = 1
Query:  112 NCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 405
            N ADN+GA+ L  I V G   R      A +GD+++A VK+  P++   + +++ AVI R RK   R DG  + F+DNA V +N +   +G+ + GPI +E
Sbjct:    9 NVADNSGAQKLMCIRVTGTNDR----EYAGIGDVIVAVVKEAVPNMPTKKSEIVRAVIARTRKEIGRTDGSVIKFDDNAAVTINRENNPRGTRVFGPIARE 105          
The following BLAST results are available for this feature:
BLAST of EY680230 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 363
Match NameE-valueIdentityDescription
RK14_CICAR9.153e-1135.6550S ribosomal protein L14, chloroplastic OS=Cicer ... [more]
RK14_CARPA9.153e-1135.6550S ribosomal protein L14, chloroplastic OS=Carica... [more]
RK14_ANEMR9.153e-1137.6250S ribosomal protein L14, plastid OS=Aneura mirab... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-008-G10-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY680230 ID=EY680230; Name=EY680230; organism=Citrus sinensis; type=EST; length=864bp
CCACGCGTCCGCAGACGAGAGGAGTGAGCAACAATGTCGAAGCGAGGAAG
GGGAGGATCGGCGGGGAACAAGTTCAGGATGTCGCTGGGTTTGCCGGTGG
CGGCGACGGTGAACTGCGCCGACAACACGGGGGCGAAGAATCTCTACATA
ATATCGGTGAAAGGAATCAAAGGGAGACTCAACCGACTTCCGTCGGCCTG
CGTGGGTGACATGGTCATGGCCACTGTCAAGAAAGGAAAGCCCGATCTGA
GGAAAAAGGTCATGCCAGCTGTCATCGTCCGCCAGCGCAAGCCTTGGCGC
CGAAAGGACGGCGTCTTCATGTACTTTGAAGATAATGCTGGTGTCATCGT
CAACCCTAAGGGCGAAATGAAAGGATCTGCCATAACTGGACCAATTGGTA
AGGAGTGTGCTGATCTGTGGCCAAGAATTGCAAGTGCTGCCAATGCTATT
GTCTGAGTGGGGGTTTAAGGGATCTTTTTGGCCTTAGTTTTTTAGGTGAT
CGTAGGGTCTGTTAATATCATTGGGATCATTTCCTACTGATGAGTGTTGT
GGTTGTTTCCTCTATTGCTAGACAGGGATACAAGGAGATTTCAGATTTTC
TACCTATTCTAATTGGAGAAAAATTTTAATTTTGGGGTTTAATTTCCAAA
AAATTTTGTTCTTTTTAAAAGAATATTGATTTTTTTCCAAAAAAAAAAAA
AAAGGGGCGGCCGCTCCTAAAAGAATCCAGCTTTAGTAACCCTGGGTTGC
CAAATTCCTAACCTTTTTATAGAGGCCCCTTAAATTCAATTTCCTTGGCC
CCCTTTTTTACCAATCTCTGGGCATTGGAAAAACCCTGTGGGTTTTCCCC
AATTTAATTGGCCT
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