EY680193

Overview
NameEY680193
Unique NameEY680193
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length885
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY680193 vs. ExPASy Swiss-Prot
Match: RCA_MAIZE (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Zea mays GN=RCA1 PE=2 SV=3)

HSP 1 Score: 367.081 bits (941), Expect = 7.596e-101
Identity = 192/262 (73.28%), Postives = 208/262 (79.39%), Query Frame = 1
Query:   34 SKVPSASFKITA--EVDENKQTKKDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDARAGRMGGTTQYTVNNQMVNAPLMNIAEYPHLCPTPWEVPKGRRTPGVPSKAPGNGLPHLVSLPPSREGVREKFH 813
            S   ++ FK  A  EVDE KQT +DRWKGLAYD SDDQQDITRGKG VD+LFQAPMG GTH AV+SSYDYISQG ++YN DN MDG YIA  FMDKLVVH++KNFM+LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGI PIMMSAGELESGNAGEPAKLIRQRYREA+D+IKKGKM CL INDLDA AGRMGGTTQYTVNNQMVNA LMNIA+ P     P    K    P VP    GN    L + P  R+G  EKF+
Sbjct:   41 SSSSNSRFKAMAAKEVDETKQTDEDRWKGLAYDISDDQQDITRGKGLVDNLFQAPMGDGTHVAVLSSYDYISQGQKSYNFDNMMDGFYIAKGFMDKLVVHLSKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGITPIMMSAGELESGNAGEPAKLIRQRYREASDLIKKGKMSCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNK-EDNPRVPIIVTGNDFSTLYA-PLIRDGRMEKFY 300          
BLAST of EY680193 vs. ExPASy Swiss-Prot
Match: RCAA_HORVU (Ribulose bisphosphate carboxylase/oxygenase activase A, chloroplastic OS=Hordeum vulgare GN=RCAA PE=2 SV=1)

HSP 1 Score: 366.696 bits (940), Expect = 9.921e-101
Identity = 192/271 (70.85%), Postives = 212/271 (78.23%), Query Frame = 1
Query:    7 KKVSSRIPPSKVPSASFKITAEVDENKQTKK--DRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDARAGRMGGTTQYTVNNQMVNAPLMNIAEYPHLCPTPWEVPKGRRTPGVPSKAPGNGLPHLVSLPPSREGVREKFH 813
            K+V+S +      S + + T    EN   K+  D+WKGLAYD SDDQQDITRGKG VDSLFQAP G GTH AV+SSY+Y+SQGLR Y+ DNTM G YIAPAFMDKLVVH++KNFM+LPNIK+PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAD+IKKGKMCCL INDLDA AGRMGGTTQYTVNNQMVNA LMNIA+ P     P    K R  P VP    GN    L + P  R+G  EKF+
Sbjct:   26 KQVTSAVNYHGKSSKANRFTVMAAENIDEKRNTDKWKGLAYDISDDQQDITRGKGIVDSLFQAPTGHGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIAPAFMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADAPTNVQLPGMYNK-RENPRVPIVVTGNDFSTLYA-PLIRDGRMEKFY 294          
BLAST of EY680193 vs. ExPASy Swiss-Prot
Match: RCA2_TOBAC (Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic OS=Nicotiana tabacum GN=RCA PE=2 SV=1)

HSP 1 Score: 366.311 bits (939), Expect = 1.296e-100
Identity = 191/275 (69.45%), Postives = 213/275 (77.45%), Query Frame = 1
Query:    1 SLKKVSSR-IPPSKVPSASFKITAE---VDENKQTKKDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDARAGRMGGTTQYTVNNQMVNAPLMNIAEYPHLCPTPWEVPKGRRTPGVPSKAPGNGLPHLVSLPPSREGVREKFH 813
            +LKKV  + +   KV + S +I AE    D  KQT  DRWKGL  D SDDQQDI RGKG VDSLFQAP GTGTH+AV+ SY+Y+SQGLR YN+DNT+DG YIAP+FMDKLVVHITKNF+ LPNIKVPLILG+WGGKGQGKSFQCELVF KMGINPIMMSAGELESGNAGEPAKLIRQRYREAA+II+KG +CCL INDLDA AGRMGGTTQYTVNNQMVNA LMNIA+ P     P    K +    VP    GN    L + P  R+G  EKF+
Sbjct:   36 TLKKVYGKGVSSPKVTNRSLRIAAEEKDADPKKQTYSDRWKGLVQDFSDDQQDIARGKGMVDSLFQAPTGTGTHHAVLQSYEYVSQGLRQYNMDNTLDGFYIAPSFMDKLVVHITKNFLKLPNIKVPLILGVWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNICCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNK-QENARVPIIVTGNDFSTLYA-PLIRDGRMEKFY 308          
BLAST of EY680193 vs. ExPASy Swiss-Prot
Match: RCA_SOLPN (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Solanum pennellii PE=2 SV=1)

HSP 1 Score: 361.303 bits (926), Expect = 4.168e-99
Identity = 190/273 (69.60%), Postives = 216/273 (79.12%), Query Frame = 1
Query:    1 SLKKVSSR-IPPSKVPSASFKITA-EVDENKQTKKDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDARAGRMGGTTQYTVNNQMVNAPLMNIAEYPHLCPTPWEVPKGRRTPGVPSKAPGNGLPHLVSLPPSREGVREKFH 813
            SLKKV ++ +   KV + + ++ A EVDE   TK+DRWKGL  + SDDQQDI RGKG VDSLFQAP GTGTH+A+M+SY+Y+SQ L+TY LDN +DG YIAPAFMDKLVVHITKNF++LPNIKVPLILG+WGGKGQGKSFQCELVF KMGINPIMMSAGELESGNAGEPAKLIRQRYREAA+II+KG MCCL INDLDA AGRMGGTTQYTVNNQMVNA LMNIA+ P     P    K +    VP    GN    L + P  R+G  EKF+
Sbjct:   36 SLKKVYAKGVSSPKVSNRNLRVVAQEVDE---TKEDRWKGLYDNTSDDQQDIARGKGLVDSLFQAPTGTGTHHAIMNSYEYVSQALKTYQLDNKLDGFYIAPAFMDKLVVHITKNFLTLPNIKVPLILGVWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNK-QENARVPIIVTGNDFSTLYA-PLIRDGRMEKFY 303          
BLAST of EY680193 vs. ExPASy Swiss-Prot
Match: RCA_SPIOL (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 329.331 bits (843), Expect = 1.755e-89
Identity = 176/272 (64.71%), Postives = 202/272 (74.26%), Query Frame = 1
Query:    1 SLKKVSS-RIPPSKVPSASFKITAEVDENKQTKKDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDARAGRMGGTTQYTVNNQMVNAPLMNIAEYPHLCPTPWEVPKGRRTPGVPSKAPGNGLPHLVSLPPSREGVREKFH 813
            SLKK ++ R P S   S +  +T +  EN++   D+W  LA D SDDQ DI RGKG VDSLFQAP   GTH  + SS++Y SQGLR Y++DN +   YIAPAFMDKLVVHITKNF++LPNIK+PLILG+WGGKGQGKSFQCELVFAK+GINPIMMSAGELESGNAGEPAKLIRQRYREAAD+I KGKMC L INDL+  AGRMGGTTQYTVNNQMVNA LMNIA+ P     P    K +    VP    GN    L + P  R+G  EKF+
Sbjct:   36 SLKKHTNVRFPSS---SRTTSMTVKAAENEEKNTDKWAHLAKDFSDDQLDIRRGKGMVDSLFQAPADAGTHVPIQSSFEYESQGLRKYDIDNMLGDFYIAPAFMDKLVVHITKNFLNLPNIKIPLILGVWGGKGQGKSFQCELVFAKLGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIAKGKMCALFINDLEPGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNK-QDNARVPIIVTGNDFSTLYA-PLIRDGRMEKFY 302          
BLAST of EY680193 vs. ExPASy Swiss-Prot
Match: RCA_CHLRE (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Chlamydomonas reinhardtii PE=2 SV=1)

HSP 1 Score: 283.878 bits (725), Expect = 8.457e-76
Identity = 155/268 (57.84%), Postives = 184/268 (68.66%), Query Frame = 1
Query:   19 SRIPPSKVPSASFKITAEVDENKQTKKDRWKGL--AYDESDDQQDITRGKGAVDSLFQAPMGTG-THYAVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDARAGRMGGTTQYTVNNQMVNAPLMNIAEYPHLCPTPWEVPKGRRTPGVPSKAPGNGLPHLVSLPPSREGVREKFH 813
            +R+    V  A  ++ A      + +  RW+ +    D SDDQQDITRG+  VD LFQ   G G TH AV+SS +Y+SQ   ++N  N  DG YI+PAF+DK+ +HI KNFM LP IKVPLILGIWGGKGQGK+FQC L + K+GI PI+MSAGELESGNAGEPAKLIR RYREA+DIIKKG+MC L INDLDA AGRMG TTQYTVNNQMVNA LMNIA+ P     P  V K    P VP    GN    L + P  R+G  EK++
Sbjct:   18 ARVATRSVRRAQLQVVAP----SRKQMGRWRSIDAGVDASDDQQDITRGREMVDDLFQGGFGAGGTHNAVLSSQEYLSQSRASFN--NIEDGFYISPAFLDKMTIHIAKNFMDLPKIKVPLILGIWGGKGQGKTFQCALAYKKLGIAPIVMSAGELESGNAGEPAKLIRTRYREASDIIKKGRMCSLFINDLDAGAGRMGDTTQYTVNNQMVNATLMNIADNPTNVQLP-GVYKNEEIPRVPIVCTGNDFSTLYA-PLIRDGRMEKYY 277          
BLAST of EY680193 vs. ExPASy Swiss-Prot
Match: RCA_ANASC (Ribulose bisphosphate carboxylase/oxygenase activase OS=Anabaena sp. (strain CA / ATCC 33047) GN=rca PE=3 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 2.400e-46
Identity = 103/178 (57.87%), Postives = 126/178 (70.79%), Query Frame = 1
Query:  289 YIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDARAGRMGGTTQYTVNNQMVNAPLMNIAEYPH--LCPTPWEVPKGRRTPGVPSKAPGNGLPHLVSLPPSREGVREKFH 813
            YIAP F+DKL VHITKNF++LP ++VPLILGI G KG+GK+FQCEL F KMG+   ++S GELES +AG+PA+LIR RYRE A++IK +GKMC LMINDLDA AGR    TQYTVN Q+VNA LMNIA+ P     P  ++    RR   VP    GN    L + P  R+G  EKF+
Sbjct:    4 YIAPRFLDKLAVHITKNFLNLPGVRVPLILGIHGRKGEGKTFQCELAFEKMGVEVTLISGGELESPDAGDPARLIRLRYRETAELIKVRGKMCVLMINDLDAGAGRFDEGTQYTVNTQLVNATLMNIADNPTDVQLPGSYDSTPLRR---VPIIVTGNDFSTLYA-PLIRDGRMEKFY 177          
BLAST of EY680193 vs. ExPASy Swiss-Prot
Match: RCA_ANASP (Ribulose bisphosphate carboxylase/oxygenase activase OS=Anabaena sp. (strain PCC 7120) GN=rca PE=3 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 4.094e-46
Identity = 103/178 (57.87%), Postives = 126/178 (70.79%), Query Frame = 1
Query:  289 YIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLMINDLDARAGRMGGTTQYTVNNQMVNAPLMNIAEYPH--LCPTPWEVPKGRRTPGVPSKAPGNGLPHLVSLPPSREGVREKFH 813
            YIAP F+DKL VHITKNF+++P ++VPLILGI G KG+GK+FQCEL F KMGI   ++S GELES +AG+PA+LIR RYRE A++IK +GKMC LMINDLDA AGR    TQYTVN Q+VNA LMNIA+ P     P  ++    RR   VP    GN    L + P  R+G  EKF+
Sbjct:    4 YIAPRFLDKLAVHITKNFLNIPGVRVPLILGIHGRKGEGKTFQCELAFEKMGIEVTLISGGELESPDAGDPARLIRLRYRETAELIKVRGKMCVLMINDLDAGAGRFDEGTQYTVNTQLVNATLMNIADNPTDVQLPGSYDSNPIRR---VPIIVTGNDFSTLYA-PLIRDGRMEKFY 177          
BLAST of EY680193 vs. ExPASy Swiss-Prot
Match: RCA_ARAHY (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic (Fragments) OS=Arachis hypogaea GN=RCA PE=1 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 7.495e-32
Identity = 88/165 (53.33%), Postives = 90/165 (54.55%), Query Frame = 1
Query:  112 GLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDARAGRM 606
            GLAYD SDDQQDITRG   VDSLFQAPM  GTHYAVMSSY+YISQGLR                                    VPLILGIWGGK              MGINPIMMSAGELESGNAGEPA                 KMCCL INDLDA AGR+
Sbjct:    1 GLAYDISDDQQDITRGM--VDSLFQAPMNDGTHYAVMSSYEYISQGLR------------------------------------VPLILGIWGGK--------------MGINPIMMSAGELESGNAGEPA-----------------KMCCLFINDLDAGAGRV 96          
BLAST of EY680193 vs. ExPASy Swiss-Prot
Match: RCA_VITSX (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic (Fragments) OS=Vitis sp. PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.507e-11
Identity = 38/61 (62.30%), Postives = 40/61 (65.57%), Query Frame = 1
Query:  436 KMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLMINDLDARAGRMGGTT 618
            +MGINPIMMSAGELESGNAGEPA                 KMCCL INDLDA AGR+G  T
Sbjct:   15 RMGINPIMMSAGELESGNAGEPA-----------------KMCCLFINDLDAGAGRIGVCT 58          
The following BLAST results are available for this feature:
BLAST of EY680193 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
RCA_MAIZE7.596e-10173.28Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCAA_HORVU9.921e-10170.85Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA2_TOBAC1.296e-10069.45Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_SOLPN4.168e-9969.60Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_SPIOL1.755e-8964.71Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_CHLRE8.457e-7657.84Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ANASC2.400e-4657.87Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ANASP4.094e-4657.87Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ARAHY7.495e-3253.33Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_VITSX2.507e-1162.30Ribulose bisphosphate carboxylase/oxygenase activa... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-008-D08-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY680193 ID=EY680193; Name=EY680193; organism=Citrus sinensis; type=EST; length=885bp
AGCTTGAAGAAGGTAAGCTCAAGGATCCCCCCATCCAAGGTCCCTTCTGC
GAGCTTCAAGATTACTGCTGAAGTCGATGAGAACAAGCAGACCAAGAAGG
ACAGATGGAAGGGCCTTGCCTACGACGAATCTGATGACCAGCAAGACATC
ACCAGAGGAAAAGGTGCTGTGGACTCTCTGTTCCAAGCCCCCATGGGAAC
CGGAACTCACTATGCTGTCATGAGTTCTTATGACTACATCAGCCAAGGTC
TCCGCACATACAACTTGGACAACACGATGGACGGTCTCTACATTGCCCCT
GCTTTCATGGACAAGCTTGTTGTTCACATCACCAAGAACTTCATGTCCCT
GCCCAACATCAAGGTTCCTCTCATCTTGGGTATATGGGGAGGCAAAGGGC
AAGGAAAATCATTCCAATGTGAGCTTGTTTTCGCCAAGATGGGCATCAAC
CCAATTATGATGAGTGCCGGAGAATTGGAAAGTGGCAATGCTGGAGAACC
CGCTAAGTTGATCAGGCAGAGGTACCGTGAGGCAGCTGACATTATCAAGA
AGGGAAAAATGTGCTGCCTCATGATCAATGATCTTGATGCAAGAGCTGGT
CGTATGGGTGGCACCACCCAGTACACAGTTAACAACCAAATGGTTAACGC
CCCACTCATGAACATTGCTGAATACCCCCACTTGTGTCCAACTCCCTGGG
AAGTACCAAAAGGGAGGAGAACCCCCGGGGTCCCATCCAAAGCCCCCGGT
AATGGACTTCCCCACCTTGTAAGCCTCCCCCCCTCCCGGGAGGGCGTAAG
GGAAAAATTCCACCGGGGCCCCCAAAAAGGGAGGACCGGTTAGGGGGGGG
GGGCGGGGGGTATCTTTCCGGGGAGGAAACAGGGG
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