EY680188

Overview
NameEY680188
Unique NameEY680188
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length873
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY680188 vs. ExPASy Swiss-Prot
Match: GLGC_SHEB5 (Glucose-1-phosphate adenylyltransferase OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=glgC PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.156e-11
Identity = 52/211 (24.64%), Postives = 91/211 (43.13%), Query Frame = 3
Query:   78 DFGSEVIPGATSIGMRVQAYLY-------DGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDAD------VTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGILSSRAGIVTINPRML*IPSG 671
            DFG ++IP        V AY +         YW D+GT+++F+ AN+ +   P P  + YD   PI+T    LPP+K +  D        DS++  GC+I    +  SV+     +   +++ED++++                     + + ++  IK AI+D+   I + + I  +     A     G   S  G+  +   ML +P G
Sbjct:  233 DFGKDIIPAIIE-KHNVFAYPFKSAFPNEQAYWRDVGTLDSFWQANMELL-SPTPALNLYDAKWPIWTFQEQLPPAKFVFDDDDRRGMALDSIVSGGCIISGATVRRSVLFNEVRVCSYSLVEDSVVL-------------------PDVVVLRHCKIKNAILDRGCIIPEGMVIGYNHDHDRA----KGFRVSEKGVTLVTRDMLGLPVG 418          
BLAST of EY680188 vs. ExPASy Swiss-Prot
Match: GLGC_RHITR (Glucose-1-phosphate adenylyltransferase OS=Rhizobium tropici GN=glgC PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.156e-11
Identity = 53/219 (24.20%), Postives = 94/219 (42.92%), Query Frame = 3
Query:   12 GIYVISKDVMLNLLRDKFPGAN---DFGSEVIPGATSIGMRV----------QAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDAD------VTDSVIGEGCVIKNCKIHHSVV--GLRS---CISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAAR 596
            GIYV     ++  L+      N   DFG ++IP     G  V            +  + YW D+GTI+A++ AN+ +T   +P+   YD+S PI+T     PP+K +  D         SV+   C+I    +++S++  G+R+      EGA++  +                        + +G+ + +K  +ID    I + + +V  D   +A R
Sbjct:  207 GIYVFHTKFLIECLKRDAADPNSSRDFGKDIIPHIVKNGKAVAHRFTQSCVRSDFEREAYWRDVGTIDAYWQANIDLT-AVVPELDIYDKSWPIWTYAEISPPAKFVHDDEDRRGSAVSSVVAGDCIISGASLYNSLLFTGVRANSYSKLEGAVVLPS------------------------VKVGRRAQLKNVVIDHGVTIPEGL-VVGEDPELDAKR 399          
BLAST of EY680188 vs. ExPASy Swiss-Prot
Match: GLGC_FRASN (Glucose-1-phosphate adenylyltransferase OS=Frankia sp. (strain EAN1pec) GN=glgC PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.156e-11
Identity = 57/234 (24.36%), Postives = 102/234 (43.59%), Query Frame = 3
Query:   12 GIYVISKDVMLNLLRDKFP---GANDFGSEVIPGATSIGMRVQAYLYD--------------GYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQ-PRYLPPSKMLD------ADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGILSSRAGIVTI 641
            G YV + DV+++ LR         +D G  ++P     G    A +YD              GYW D+GT++++++A++ +     P F+ Y+R  PIYT  P  +PP+K +          TDS++  G +I    +  SV+     ++  +++E+ ++M                       IG+ + ++ AI+DKN  +      V  D   + AR   G   S AG+  +
Sbjct:  199 GNYVFTTDVLIDALRADAADPESVHDMGGSIVPMLVEQGT---AAVYDFAANQVPGALERDHGYWRDVGTLDSYFDAHMDLCALD-PVFNLYNRDWPIYTNVPPSVPPAKFVHDTPGRVGVATDSIVSNGVIISGGAVRRSVLSPGVRVNSWSVVENAVVMDNSV-------------------IGRRAVVRDAILDKNVVVPPGA-TVGVDKEHDRAR---GYQVSEAGVTVV 405          
BLAST of EY680188 vs. ExPASy Swiss-Prot
Match: GLGC_RHOPS (Glucose-1-phosphate adenylyltransferase OS=Rhodopseudomonas palustris (strain BisB5) GN=glgC PE=3 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 5.429e-11
Identity = 60/220 (27.27%), Postives = 99/220 (45.00%), Query Frame = 3
Query:   12 GIYVI-SKDVMLNLLRDKF--PGANDFGSEVIPGATSIGMRVQAYLYD-----------GYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLD------ADVTDSVIGEGCVIKNCKIHHSVV--GLRS---CISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAAR 596
            GIYV  +K ++  L RD      ++DFG ++IP     G  V A+ +D            YW D+GT++A++ AN+ +T   +P    YDR  PI+T     PP+K +        +   S++  GC+I    + H+++  G+R+      EGA+I    L  AD                    IG++  +   ++D   RI D + +V  D   +A R
Sbjct:  207 GIYVFDTKFLIEELHRDAANPDSSHDFGKDIIPYIVKHGKAV-AHHFDKSCRRSHAEDTSYWRDVGTVDAYWAANIDLT-DIVPQLDLYDREWPIWTYGEITPPAKFVHDKDGRRGEAVSSLVSGGCIISGASLRHTLLFTGVRAHSYTHIEGAVI----LPYAD--------------------IGRSCRLTNVVVDAEVRIPDGL-VVGEDPELDAKR 399          
BLAST of EY680188 vs. ExPASy Swiss-Prot
Match: GLGC_RHIRD (Glucose-1-phosphate adenylyltransferase OS=Rhizobium radiobacter GN=glgC PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.429e-11
Identity = 54/234 (23.08%), Postives = 100/234 (42.74%), Query Frame = 3
Query:   12 GIYVISKDVMLNLLRDKFP---GANDFGSEVIPGATSIGMRV----------QAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDAD------VTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGILSSRAGIVTINPRML 656
            GIYV     ++  +R        + DFG ++IP     G  V            + ++ YW D+GTI+A++ AN+ +T   +PD   YD+S PI+T     PP+K +  D         SV+   C+I    ++ S++      +  + +E+ +++ +                   + IG+++ +   +ID    I + + IV  D   +A R       + +GI  I   M+
Sbjct:  207 GIYVFHTKFLMEAVRRDAADPTSSRDFGKDIIPYIVEHGKAVAHRFADSCVRSDFEHEPYWRDVGTIDAYWQANIDLT-DVVPDLDIYDKSWPIWTYAEITPPAKFVHDDEDRRGSAVSSVVSGDCIISGAALNRSLLFTGVRANSYSRLENAVVLPS-------------------VKIGRHAQLSNVVIDHGVVIPEGL-IVGEDPELDAKR----FRRTESGICLITQSMI 415          
BLAST of EY680188 vs. ExPASy Swiss-Prot
Match: GLGC_BRAJA (Glucose-1-phosphate adenylyltransferase OS=Bradyrhizobium japonicum GN=glgC PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.429e-11
Identity = 49/215 (22.79%), Postives = 96/215 (44.65%), Query Frame = 3
Query:   12 GIYVISKDVMLNLLRD--KFPGAN-DFGSEVIPGATSIGMRVQAYLYD-----------GYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLD------ADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAAR 596
            GIYV     + + L+   + P +N DFG ++IP     G R  A+ +             YW D+GT++A++ AN+ +T   +P+   +DR+ PI++     PP+K +            S++  GC+I    +  S++     I+  A +E+ ++M                     + +G+ + +K  +ID+   I + + ++  D   +A R
Sbjct:  207 GIYVFDAKFLFDQLKRDAEDPSSNHDFGKDIIPYIVKNG-RAIAHQFSTSCVRSGDDPRAYWRDVGTVDAYWAANIDLT-DVVPELDLFDRAWPIWSYSEITPPAKFVHDEESRRGQAVSSLVSGGCIISGASLRRSLLFTGVRINSYANVENAVIMPY-------------------VNVGRGARLKNVVIDRGVEIPEGL-VIGEDPELDAKR 399          
BLAST of EY680188 vs. ExPASy Swiss-Prot
Match: GLGC_THECA (Glucose-1-phosphate adenylyltransferase OS=Thermus caldophilus GN=glgC PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.260e-11
Identity = 52/205 (25.37%), Postives = 91/205 (44.39%), Query Frame = 3
Query:   12 GIYVISKDVMLNLL----RDKFPGANDFGSEVIPGATSIGMRVQAYLYDG-----------YWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLD------ADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKI 563
            G Y+   + +  LL    RD+   A+DFG  VIP A  +G RV AY +             YW D+GT++A+Y A++ + K   P F       P+ T   + PP+K +           +S++  G ++    +  SV+  R  ++  +++E ++L                      + +G+   I+ AIIDKN +I  + +I
Sbjct:  203 GNYIFRTEALFELLEADARDE-TSAHDFGKGVIPRAIRVGYRVYAYDFHRNPIPGQEGPNLYWRDVGTLDAYYEASMDLVKVD-PVFGLCSPVWPLRTANLFSPPAKFVHETGERVGRALNSLLAGGVIVSGGTVRESVLFRRVRVNSYSLVERSVLFD-------------------DVEVGRYCRIRNAIIDKNVKIPPHTEI 386          
The following BLAST results are available for this feature:
BLAST of EY680188 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 287
Match NameE-valueIdentityDescription
GLGC_SHEB54.156e-1124.64Glucose-1-phosphate adenylyltransferase OS=Shewane... [more]
GLGC_RHITR4.156e-1124.20Glucose-1-phosphate adenylyltransferase OS=Rhizobi... [more]
GLGC_FRASN4.156e-1124.36Glucose-1-phosphate adenylyltransferase OS=Frankia... [more]
GLGC_RHOPS5.429e-1127.27Glucose-1-phosphate adenylyltransferase OS=Rhodops... [more]
GLGC_RHIRD5.429e-1123.08Glucose-1-phosphate adenylyltransferase OS=Rhizobi... [more]
GLGC_BRAJA5.429e-1122.79Glucose-1-phosphate adenylyltransferase OS=Bradyrh... [more]
GLGC_THECA9.260e-1125.37Glucose-1-phosphate adenylyltransferase OS=Thermus... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-008-D02-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY680188 ID=EY680188; Name=EY680188; organism=Citrus sinensis; type=EST; length=873bp
CCACGCGTCCGGGTATTTATGTCATCAGCAAAGATGTGATGTTAAATCTG
CTAAGGGATAAATTTCCTGGAGCTAATGATTTTGGAAGTGAAGTTATCCC
TGGTGCAACTTCCATTGGGATGAGAGTGCAAGCATATTTATATGATGGCT
ACTGGGAAGACATTGGAACAATTGAGGCTTTCTACAATGCGAATCTGGGG
ATCACCAAAAAGCCAATTCCGGATTTCAGCTTCTATGACCGTTCTGCTCC
AATCTATACACAGCCTAGATATCTACCTCCTTCTAAGATGCTTGATGCTG
ATGTCACTGATAGTGTAATTGGTGAAGGCTGTGTGATTAAGAATTGCAAA
ATTCACCATTCTGTTGTTGGGCTTCGATCTTGCATATCAGAAGGTGCAAT
TATCGAAGATACTTTACTTATGGGAGCAGATTATTATGAGACGGATGCGG
ACAGGAGGTTTTTGGCTGCAAAGGGTAGTGTTCCAATTGGTATTGGCAAG
AATTCTCACATCAAGAGAGCAATAATCGACAAAAATGCTCGAATTGGGGA
TAATGTGAAGATCGTCAACAGTGACAGTGTGCAAGAAGCAGCAAGGGAAA
CAGATGGAATACTTTCATCAAGAGCGGGGATTGTCACAATTAATCCAAGG
ATGCTTTGAATTCCAAGTGGAACCATAATCTAAACTGTCCTCTTCCCTTC
CCATTTTCATCCCAAGCTACCGGGCCCCTCCCCTCCAACCCCCGAAAAGG
CCCTAAAATCCCAGCCTGCTTCCCCCTTTACCTTTGGCCCTCTTTTTTCC
CAAAACCCGTTAATTTTCCGGGGCGGGGGTAAGGTTATTTTTGAAAAGAG
AAAAAAGGACCCTGGGAAAAAGG
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