EY680188

Overview
NameEY680188
Unique NameEY680188
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length873
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY680188 vs. ExPASy Swiss-Prot
Match: GLGC_DESHD (Glucose-1-phosphate adenylyltransferase OS=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) GN=glgC PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.286e-16
Identity = 65/228 (28.51%), Postives = 112/228 (49.12%), Query Frame = 3
Query:   12 GIYVISKDVMLN-LLRDKFP--GANDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLD-ADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLM-GADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGILSSRAGIVTINPRML*IPSGTII 680
            G+Y+ + DV+   LL D+      +DFG  V+P     G R+ +YL+ GYW D+GTIE++YNAN+ + ++   D  F++    +++    L P  + + A + +S+IG GC I   ++  SV+     + EG++IE ++L+  ++ YE               + + K    + AI+  + RIGD          +E     +GI        T+    L IP GT+I
Sbjct:  193 GVYIFNWDVLKEALLEDERDPQSDHDFGKNVLPRLLQQGRRLYSYLFHGYWRDVGTIESYYNANMEVLQEERVD-KFFELKQRVFSNEEILAPQHLGERAKIHNSLIGNGCTILG-EVRDSVIASGVYVGEGSLIEQSILLPNSEIYE--------------DVRLHKTILGENAIVRAHCRIGDK---------REGNPPQEGI--------TVIGDHLHIPEGTVI 387          
BLAST of EY680188 vs. ExPASy Swiss-Prot
Match: GLGC_DESHY (Glucose-1-phosphate adenylyltransferase OS=Desulfitobacterium hafniense (strain Y51) GN=glgC PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.291e-16
Identity = 65/228 (28.51%), Postives = 111/228 (48.68%), Query Frame = 3
Query:   12 GIYVISKDVMLN-LLRDKFP--GANDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLD-ADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLM-GADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGILSSRAGIVTINPRML*IPSGTII 680
            G+Y+   DV+   LL D+      +DFG  V+P     G R+ +YL+ GYW D+GTIE++YNAN+ + ++   D  F++    +++    L P  + + A + +S+IG GC I   ++  SV+     + EG++IE ++L+  ++ YE               + + K    + AI+  + RIGD          +E     +GI        T+    L IP GT+I
Sbjct:  193 GVYIFKWDVLKEALLEDEQDPQSDHDFGKNVLPRLLQQGRRLYSYLFHGYWRDVGTIESYYNANMEVLQEERVD-KFFELKQRVFSNEEILAPQHLGERAKIHNSLIGNGCTILG-EVRDSVIASGVYVGEGSLIEQSILLPNSEIYE--------------DVRLHKTILGENAIVRAHCRIGDK---------REGNPPQEGI--------TVIGDHLHIPEGTVI 387          
BLAST of EY680188 vs. ExPASy Swiss-Prot
Match: GLGC_THEYD (Glucose-1-phosphate adenylyltransferase OS=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) GN=glgC PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.605e-16
Identity = 59/201 (29.35%), Postives = 101/201 (50.25%), Query Frame = 3
Query:   12 GIYVISKDVMLN-LLRDKFPGANDFGSEVIPGATSIGMRVQAYLYD---------------GYWEDIGTIEAFYNANLGIT-KKPIPDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKI 563
            G Y+ + D++++ L+R +    +DFG+ VIP    +G + + Y YD               GYW D+GTI A+++A++ +  +KPI  F  Y++  PI+      PP K+LD ++ +S+I EG +I   KI +S +   S I +   I+D+L+M                     + I +NS + R I+DK   + +  KI
Sbjct:  197 GNYIFNADILIDALVRAEKKKQHDFGAHVIPDL--VGRKCKVYAYDFAKNEIPGIKSYEERGYWRDVGTISAYFDAHMDMLGEKPI--FEIYNKMWPIHPARYEGPPVKILDGEIKNSIIAEGALIYGGKIENSFIRSGSIIEKDVEIKDSLIMD-------------------DVIIKRNSKLYRVIVDKKNVVYEGEKI 374          
BLAST of EY680188 vs. ExPASy Swiss-Prot
Match: GLGC_METFK (Glucose-1-phosphate adenylyltransferase OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=glgC PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 9.560e-16
Identity = 64/235 (27.23%), Postives = 113/235 (48.09%), Query Frame = 3
Query:   12 GIYVISKDVMLNLL---RDKFPGANDFGSEVIPGATSIGMRVQAYLY--------DG--YWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKML------DADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKI-VNSDSVQEAARETDGILSSRAGIVTINPRML 656
            GIYV +   +   L    D    ++DFG ++IP       RV A+ +        DG  YW D+GT++A++ AN+ +T K +P+ + YDR  PI+T    LPP+K +          TDS+I  GC++    + +SV+     ++  + IE ++++                     + IG++  ++R ++D  ARI D ++I VN +  ++    T+       G+V + P ML
Sbjct:  212 GIYVFNAAFLYEQLIRDADDPKSSHDFGHDIIPYLIK-KYRVFAHRFTDSCVGAADGNYYWRDVGTVDAYWEANMELT-KVVPELNLYDRQWPIWTYQEQLPPAKFVFDNEERRGQATDSLISGGCIVSGANVRNSVLFSDVRVNSYSSIEQSVIL-------------------PKVDIGRHVTLRRVVVDSGARIPDGMEIGVNLELDRKRFHITE------QGVVLVTPDML 419          
BLAST of EY680188 vs. ExPASy Swiss-Prot
Match: GLGC_LACCB (Glucose-1-phosphate adenylyltransferase OS=Lactobacillus casei (strain BL23) GN=glgC PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 9.560e-16
Identity = 57/189 (30.16%), Postives = 92/189 (48.68%), Query Frame = 3
Query:   12 GIYVISKDVMLNLLRDKFP---GANDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKML-DADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIV 566
            GIY+ +   +   L + +       DFG +VIP   +      AY + GYW+D+GTI++ + AN+     P    +  +R+  I++Q   LPP  +   A V  S+I +GC +    I HS++     I EG++I+D+++M                       IGKN  +  AI+ +NA IGDN K+V
Sbjct:  192 GIYIFNWPTLKQYLTESYATDGAMEDFGHDVIPAYLTHNEASYAYAFRGYWKDVGTIQSLWEANMEFL-NPNNPLNIGNRNWRIFSQNEALPPMFLTKTAKVAGSMIVDGCYVAG-SIQHSILSQNVKIGEGSVIKDSMIMPNAV-------------------IGKNVTVDHAIVGENAIIGDNGKVV 359          
BLAST of EY680188 vs. ExPASy Swiss-Prot
Match: GLGC_LACC3 (Glucose-1-phosphate adenylyltransferase OS=Lactobacillus casei (strain ATCC 334) GN=glgC PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 9.560e-16
Identity = 57/189 (30.16%), Postives = 92/189 (48.68%), Query Frame = 3
Query:   12 GIYVISKDVMLNLLRDKFP---GANDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKML-DADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIV 566
            GIY+ +   +   L + +       DFG +VIP   +      AY + GYW+D+GTI++ + AN+     P    +  +R+  I++Q   LPP  +   A V  S+I +GC +    I HS++     I EG++I+D+++M                       IGKN  +  AI+ +NA IGDN K+V
Sbjct:  192 GIYIFNWPTLKQYLTESYATDGAMEDFGHDVIPAYLTHNEASYAYAFRGYWKDVGTIQSLWEANMEFL-NPNNPLNIGNRNWRIFSQNEALPPMFLTKTAKVAGSMIVDGCYVAG-SIQHSILSQNVKIGEGSVIKDSMIMPNAV-------------------IGKNVTVDHAIVGENAIIGDNGKVV 359          
BLAST of EY680188 vs. ExPASy Swiss-Prot
Match: GLGC_BIFA0 (Glucose-1-phosphate adenylyltransferase OS=Bifidobacterium animalis subsp. lactis (strain AD011) GN=glgC PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.249e-15
Identity = 59/210 (28.10%), Postives = 93/210 (44.29%), Query Frame = 3
Query:   69 GANDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDA------DVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGILSSRAGIVTINPRML*IPSGTII 680
            G  DF    IPGAT+            YW D+GTI  FY+A++ +    IP+F+ Y+   PIYT    LPP+K + A        TDS++  G ++   +IHHSV+     +   + + D++L                      + I + + + RAI+DKN  + +N   V  D   + AR   G   +  GI         +P GT++
Sbjct:  243 GVYDFSRNEIPGATTTD--------HAYWRDVGTIRQFYDAHMDLISY-IPEFNLYNMEWPIYTSSGNLPPAKFVHAAGDRIGHATDSIVSPGVIVSGGEIHHSVISPNVRVHSWSQVNDSILFD-------------------NVEINRRARVNRAILDKNVVLTEN-STVGLDVEHDLAR---GFTVTSDGITV-------VPKGTVV 413          
BLAST of EY680188 vs. ExPASy Swiss-Prot
Match: GLGC_RHOBA (Glucose-1-phosphate adenylyltransferase OS=Rhodopirellula baltica GN=glgC PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.631e-15
Identity = 66/229 (28.82%), Postives = 104/229 (45.41%), Query Frame = 3
Query:   12 GIYVISKDVMLNLLRDKFP---GANDFGSEVIPGATSIGMRVQAYLY-------DGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKML---------DADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGILSSRAGIVTI 641
            GIYV +   +   L D        +DFG  +IPGA     +V A+ +       D YW D+GT+EA+Y AN+ +     P  + YDR  PI +    LPP K +           +  DS++ +G +I    +  SV+G    I+  A +ED++L                      + +G++S I+RAIIDK  +I    +I   D   + AR   G+  + +G+V I
Sbjct:  219 GIYVFNTRFLFERLCDDATQPDSDHDFGKNIIPGAIE-DSQVFAFPFTDENRKRDAYWRDVGTLEAYYEANMDLVGVD-PQLNLYDRQWPIRSFQPQLPPPKFVFGSEGRSSRRGEALDSIVCQGAIISGGCVRRSVIGTGCRINSYAQVEDSILFD-------------------DVNVGRHSRIRRAIIDKGVQIPPETEI-GYDLALDRAR---GLTVTDSGLVVI 422          
BLAST of EY680188 vs. ExPASy Swiss-Prot
Match: GLGC_NOCFA (Glucose-1-phosphate adenylyltransferase OS=Nocardia farcinica GN=glgC PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.631e-15
Identity = 58/228 (25.44%), Postives = 107/228 (46.93%), Query Frame = 3
Query:   12 GIYVISKDVMLNLLR---DKFPGANDFGSEVIPGATSIGMRVQAYLYD--------------GYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDADVT-DSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGILSSRAGIVTI 641
            G YV +  V+++ +R   +     +D G ++IP     G   +A +YD              GYW D+GTI+AFY+A++ +     P F+ Y++  PI      LPP+K     +  + ++G G ++    + +SV+     + +GA +E ++LM                     + IG+ + ++RAI+DKN  +G+  +I+  D      R+ +    S  G+VT+
Sbjct:  199 GNYVFTTKVLVDSIRADAENSDSDHDMGGDIIPALVEAG---EAGVYDFADNQVPGATDRDHGYWRDVGTIDAFYDAHMDLVSVH-PVFNLYNKHWPIRGAAENLPPAKFAQGGLAQECIVGSGSILSAATVRNSVLSSNVVVDDGATVEGSVLMPG-------------------VRIGRGAVVRRAILDKNVVVGEG-EIIGVD----LDRDRERFAVSNGGVVTV 398          
BLAST of EY680188 vs. ExPASy Swiss-Prot
Match: GLGC_NITMU (Glucose-1-phosphate adenylyltransferase OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=glgC PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.130e-15
Identity = 59/234 (25.21%), Postives = 108/234 (46.15%), Query Frame = 3
Query:   12 GIYVISKDVMLNLL---RDKFPGANDFGSEVIPGATSIGMRVQAYLYDG----------YWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSK-MLDAD-----VTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGILSSRAGIVTINPRML 656
            GIYV + D + + L    D    ++DFG ++IP       RV  + +            YW D+GT+EA++ ANL +  +  PD + YD+  PI+T    LPP+K + D D       DS++  GC+I    +  S++     +   +++ED++++                     + +G+N+ ++R ++DKN  I   ++ V  D V++          +  G+  + P ML
Sbjct:  210 GIYVFNADFLFDQLIRDHDDPNSSHDFGKDLIPHLVPRS-RVFTHRFSDSCVNMVSGVPYWRDVGTVEAYWEANLDLV-QVTPDLNLYDQDWPIWTHQEQLPPAKFVFDNDDRRGQALDSMVSGGCIISGATVRRSLLFSNVQVRSYSVLEDSVIL-------------------PNVDVGRNARLRRVVVDKNCIIPPGLE-VGFDPVEDRKH----FYVTETGVTLVTPEML 417          
The following BLAST results are available for this feature:
BLAST of EY680188 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 287
Match NameE-valueIdentityDescription
GLGC_DESHD3.286e-1628.51Glucose-1-phosphate adenylyltransferase OS=Desulfi... [more]
GLGC_DESHY4.291e-1628.51Glucose-1-phosphate adenylyltransferase OS=Desulfi... [more]
GLGC_THEYD5.605e-1629.35Glucose-1-phosphate adenylyltransferase OS=Thermod... [more]
GLGC_METFK9.560e-1627.23Glucose-1-phosphate adenylyltransferase OS=Methylo... [more]
GLGC_LACCB9.560e-1630.16Glucose-1-phosphate adenylyltransferase OS=Lactoba... [more]
GLGC_LACC39.560e-1630.16Glucose-1-phosphate adenylyltransferase OS=Lactoba... [more]
GLGC_BIFA01.249e-1528.10Glucose-1-phosphate adenylyltransferase OS=Bifidob... [more]
GLGC_RHOBA1.631e-1528.82Glucose-1-phosphate adenylyltransferase OS=Rhodopi... [more]
GLGC_NOCFA1.631e-1525.44Glucose-1-phosphate adenylyltransferase OS=Nocardi... [more]
GLGC_NITMU2.130e-1525.21Glucose-1-phosphate adenylyltransferase OS=Nitroso... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-008-D02-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY680188 ID=EY680188; Name=EY680188; organism=Citrus sinensis; type=EST; length=873bp
CCACGCGTCCGGGTATTTATGTCATCAGCAAAGATGTGATGTTAAATCTG
CTAAGGGATAAATTTCCTGGAGCTAATGATTTTGGAAGTGAAGTTATCCC
TGGTGCAACTTCCATTGGGATGAGAGTGCAAGCATATTTATATGATGGCT
ACTGGGAAGACATTGGAACAATTGAGGCTTTCTACAATGCGAATCTGGGG
ATCACCAAAAAGCCAATTCCGGATTTCAGCTTCTATGACCGTTCTGCTCC
AATCTATACACAGCCTAGATATCTACCTCCTTCTAAGATGCTTGATGCTG
ATGTCACTGATAGTGTAATTGGTGAAGGCTGTGTGATTAAGAATTGCAAA
ATTCACCATTCTGTTGTTGGGCTTCGATCTTGCATATCAGAAGGTGCAAT
TATCGAAGATACTTTACTTATGGGAGCAGATTATTATGAGACGGATGCGG
ACAGGAGGTTTTTGGCTGCAAAGGGTAGTGTTCCAATTGGTATTGGCAAG
AATTCTCACATCAAGAGAGCAATAATCGACAAAAATGCTCGAATTGGGGA
TAATGTGAAGATCGTCAACAGTGACAGTGTGCAAGAAGCAGCAAGGGAAA
CAGATGGAATACTTTCATCAAGAGCGGGGATTGTCACAATTAATCCAAGG
ATGCTTTGAATTCCAAGTGGAACCATAATCTAAACTGTCCTCTTCCCTTC
CCATTTTCATCCCAAGCTACCGGGCCCCTCCCCTCCAACCCCCGAAAAGG
CCCTAAAATCCCAGCCTGCTTCCCCCTTTACCTTTGGCCCTCTTTTTTCC
CAAAACCCGTTAATTTTCCGGGGCGGGGGTAAGGTTATTTTTGAAAAGAG
AAAAAAGGACCCTGGGAAAAAGG
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