EY680188

Overview
NameEY680188
Unique NameEY680188
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length873
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY680188 vs. ExPASy Swiss-Prot
Match: GLGC_GEOMG (Glucose-1-phosphate adenylyltransferase OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=glgC PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.130e-15
Identity = 66/232 (28.45%), Postives = 109/232 (46.98%), Query Frame = 3
Query:   12 GIYVISKDVMLNLLRD--KFPGANDFGSEVIPGATSIGMRVQAYLYD------------GYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSK-MLDAD-----VTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGILSSRAGIVTINP 647
            G Y+ S   ++ +L++  K     DFG  VIP   +   RV AY ++            GYW+D+GTI+++Y AN+ +     P  + Y+   PI T     PP+K + D D       DS +  GC+     +  S+VG  + ++  +++ED++L     +E               + +G+N  I+RAIIDKN  I D   I   D  ++  R   G   + +GIV ++P
Sbjct:  203 GNYIFSTRRLIEVLQEGKKLHADLDFGKHVIPMMLAKKDRVFAYNFNDNLIPGMKPEERGYWKDVGTIDSYYEANMELIHVS-PQLNLYNYKWPILTNQGNYPPAKTVFDEDGRRGMNIDSYVCAGCITSGSVVRRSIVGPLTKVNSYSLVEDSIL-----FEN--------------VNVGRNVKIRRAIIDKNITIPDGTTI-GYDHGEDRRR---GYTVTESGIVVVSP 410          
BLAST of EY680188 vs. ExPASy Swiss-Prot
Match: GLGC_BURP8 (Glucose-1-phosphate adenylyltransferase OS=Burkholderia phymatum (strain DSM 17167 / STM815) GN=glgC PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.130e-15
Identity = 56/214 (26.17%), Postives = 94/214 (43.93%), Query Frame = 3
Query:   12 GIYVISKDVMLNLLRDKFPGA---NDFGSEVIPGATSIGMRVQAYL----------YDGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKM------LDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAAR 596
            GIYV + D + +LL D        +DFG ++IP   + G  +               + YW D+GTI+A++ ANL +    IP    YDR+ PI+T    LPP+K       L    T+ ++  GCVI   +I  SV+     ++    I + +L+                     + IG +  +++ +ID+   I D   ++  D V++  R
Sbjct:  208 GIYVFNADYLYSLLEDNITSVATDHDFGKDIIPRVVTSGNAIAHPFSMSCVSSDPSVEPYWRDVGTIDAYWAANLDLAST-IPSLDLYDRNWPIWTHQEQLPPAKFVRDLNGLQGTGTNMIVCGGCVISGSQISRSVLSSNVVVNSFCNIAEAVLL-------------------PQVSIGASCRLRKVVIDRGCHIPDGT-VIGEDPVRDGER 400          
BLAST of EY680188 vs. ExPASy Swiss-Prot
Match: GLGC_ANAD2 (Glucose-1-phosphate adenylyltransferase OS=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) GN=glgC PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.130e-15
Identity = 57/203 (28.08%), Postives = 102/203 (50.25%), Query Frame = 3
Query:   12 GIYVISKDVMLN-LLRDKFP--GANDFGSEVIPGATSIGMRVQAYLYD--------------GYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKML---DAD-----VTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARI 545
            G Y+ S D ++  ++RD      A+DFG  ++    S+  R + Y+YD              GYW D+G+I+A++ AN+ +     P FS Y+   PI+T     PP+K +   ++D      TDS++ EGC+I    +HHS++  +  ++  A ++++++     +E               + IG++  I+RAIIDK+  I
Sbjct:  197 GNYLFSTDALVQEIVRDAGDPSSAHDFGKSIV---ASMYQRKRVYVYDFARNVVPGQTERERGYWRDVGSIDAYFQANMDLVAVD-PVFSLYNDEWPIFTVQYNYPPAKFVFNNESDHRVGRATDSLVSEGCIISGSHVHHSILSPKVRVNSYATVDESIV-----FEN--------------VNIGRHCRIRRAIIDKHVDI 376          
BLAST of EY680188 vs. ExPASy Swiss-Prot
Match: GLGC_MANSM (Glucose-1-phosphate adenylyltransferase OS=Mannheimia succiniciproducens (strain MBEL55E) GN=glgC PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.782e-15
Identity = 67/233 (28.76%), Postives = 115/233 (49.36%), Query Frame = 3
Query:   12 GIYVISKDVMLNLL-RDKFPG-ANDFGSEVIPGATSIGMRVQAYLYDG-----------YWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDAD-----VTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGILSSRAGIVTINPRML 656
            GIYV + D +   L R K P  ++DFG +V+P A + G+ + A+ +D            YW+D+GT+++F+ AN+ +  +  P    YD++ PI   P    PSK    +     V +S+I  GC++KN  I +SV+     ++ G+ IE ++++                     + IGKN  ++R IID++ +I D ++I   D   ++ R       S+ GIV +   ML
Sbjct:  213 GIYVFNADYLYEALDRIKTPNTSHDFGKDVMPLALNDGV-LYAHPFDRSCKGRNTEGAIYWKDVGTLDSFWQANIDLVSEE-PQLDIYDQTWPIRGNPVQAYPSKFFYDEPNCKQVDNSLIAGGCMVKNASISYSVLFDNVSVNAGSSIEQSVIL-------------------PQVKIGKNCMLRRCIIDRHVQIPDGMQI-GVDLELDSKR----FRISKNGIVLVTESML 419          
BLAST of EY680188 vs. ExPASy Swiss-Prot
Match: GLGC_LACS1 (Glucose-1-phosphate adenylyltransferase OS=Lactobacillus salivarius subsp. salivarius (strain UCC118) GN=glgC PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.782e-15
Identity = 60/195 (30.77%), Postives = 99/195 (50.77%), Query Frame = 3
Query:   12 GIYVISKDVMLNLLRDKFPGAND---FGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLD-ADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLM-GADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSV 581
            GIY+ +   +  +L + F    D   FG  VIP     G  V AY + GYW+D+GTI++ ++AN+    +   + +  DR+  IY++    PP  + + A++ D++I +G  I   K+ HS++     I  G+++ D+++M GA                     IGKN  I RAII + A IGD+V I  +D +
Sbjct:  192 GIYIFNWKRLREVLVNSFTRNQDMVDFGKNVIPYYLKSGESVFAYNFKGYWKDVGTIDSLWHANMEFLDEN-NELNLQDRTWRIYSRNPIAPPQIIAETAEIKDAMIVDGSYIAG-KVDHSILSANVRIQTGSVVTDSVIMPGAK--------------------IGKNVTIHRAIIGEGAVIGDDVVIDGTDEI 364          
BLAST of EY680188 vs. ExPASy Swiss-Prot
Match: GLGC_CLOPS (Glucose-1-phosphate adenylyltransferase OS=Clostridium perfringens (strain SM101 / Type A) GN=glgC PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.782e-15
Identity = 55/188 (29.26%), Postives = 94/188 (50.00%), Query Frame = 3
Query:   12 GIYVISKDVMLNLLRDKF---PGANDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKM-LDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKI 563
            GIY+ +  ++   L +       +NDFG  +IP   + G ++ AY ++GYW+D+GTIE+ + AN+ + K    + S YD    IY+     P   +  DA++  S+  EGC++   K+ +SV+     + +GAI++D ++M      T  +   L  K  +            AI+ K  +IGD  KI
Sbjct:  193 GIYIFNWKILKKFLEEDELDPSSSNDFGKNIIPKMLNSGKKLIAYPFNGYWKDVGTIESLWEANMDLLKYE-DELSLYDSEWKIYSANPVRPAQFIGKDAEIKSSLTVEGCIVHG-KVENSVLFQGVYVGKGAIVKDAVIMP----NTKIEDNVLIEKAIIG---------SEAIVCKGCKIGDGNKI 365          
BLAST of EY680188 vs. ExPASy Swiss-Prot
Match: GLGC_CLOPE (Glucose-1-phosphate adenylyltransferase OS=Clostridium perfringens GN=glgC PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.782e-15
Identity = 55/188 (29.26%), Postives = 94/188 (50.00%), Query Frame = 3
Query:   12 GIYVISKDVMLNLLRDKF---PGANDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKM-LDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKI 563
            GIY+ +  ++   L +       +NDFG  +IP   + G ++ AY ++GYW+D+GTIE+ + AN+ + K    + S YD    IY+     P   +  DA++  S+  EGC++   K+ +SV+     + +GAI++D ++M      T  +   L  K  +            AI+ K  +IGD  KI
Sbjct:  198 GIYIFNWKILKKFLEEDELDQSSSNDFGKNIIPKMLNSGKKLIAYPFNGYWKDVGTIESLWEANMDLLKYE-DELSLYDSEWKIYSANPVRPAQFIGKDAEIKSSLTVEGCIVHG-KVENSVLFQGVYVGKGAIVKDAVIMP----NTKIEDNVLIEKAIIG---------SEAIVCKGCKIGDGNKI 370          
BLAST of EY680188 vs. ExPASy Swiss-Prot
Match: GLGC1_VIBPA (Glucose-1-phosphate adenylyltransferase 1 OS=Vibrio parahaemolyticus GN=glgC1 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.782e-15
Identity = 56/201 (27.86%), Postives = 95/201 (47.26%), Query Frame = 3
Query:   12 GIYVISKDVMLNLL---RDKFPGANDFGSEVIPGATSIG---------MRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDAD-----VTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKI 563
            G YV    V+ + L    D    ++DFG ++IP     G          R+     + YW D+GTI+A++ A++ + +K  P FS Y+R  P++T    LPP+   D+D     + DS++  G  ++  +I  SV+G RS I+    I + +L+G                    + IG+   ++R I+DK+A I    +I
Sbjct:  196 GNYVFEAQVLFSELVEDADNEASSHDFGKDIIPKMFPRGDVFVYDFSTNRISGEKEEVYWRDVGTIDAYWQAHMDLLEKDAP-FSLYNRKWPLHTYYPPLPPATFTDSDNGRVQIIDSLVCNGSYVRGSRIEKSVLGFRSNIASACDISECILLG-------------------DVKIGEGCVLRRVIVDKDADIAPGTQI 376          
BLAST of EY680188 vs. ExPASy Swiss-Prot
Match: GLGC_VIBFM (Glucose-1-phosphate adenylyltransferase OS=Vibrio fischeri (strain MJ11) GN=glgC PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.633e-15
Identity = 54/181 (29.83%), Postives = 88/181 (48.62%), Query Frame = 3
Query:   72 ANDFGSEVIPGATSIGMRVQAYLYDG------------YWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDAD-----VTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKI 563
            ++DFG ++IP     G     Y+YD             YW D+GTIE+++ A++ + KK  P FS Y+R  P++T    LPP+   D+D     + DS++  G  I+  +I  SV+G RS I+    I +++L+G                    + +GK   ++R I+DK A I    +I
Sbjct:  219 SHDFGKDIIPKMFPEG---NVYVYDFSTNHITGEKKEVYWRDVGTIESYWEAHMDLLKKDAP-FSLYNRKWPLHTYYPPLPPATFSDSDNGRVQIIDSLVCGGSYIRGSRIEKSVLGFRSNIASACDISESILLG-------------------NVKVGKGCVLRRVIVDKGADIAPGTEI 376          
BLAST of EY680188 vs. ExPASy Swiss-Prot
Match: GLGC_VIBF1 (Glucose-1-phosphate adenylyltransferase OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=glgC PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.633e-15
Identity = 54/181 (29.83%), Postives = 88/181 (48.62%), Query Frame = 3
Query:   72 ANDFGSEVIPGATSIGMRVQAYLYDG------------YWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRYLPPSKMLDAD-----VTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKI 563
            ++DFG ++IP     G     Y+YD             YW D+GTIE+++ A++ + KK  P FS Y+R  P++T    LPP+   D+D     + DS++  G  I+  +I  SV+G RS I+    I +++L+G                    + +GK   ++R I+DK A I    +I
Sbjct:  219 SHDFGKDIIPKMFPEG---NVYVYDFSTNHIKGEKKEVYWRDVGTIESYWEAHMDLLKKDAP-FSLYNRKWPLHTYYPPLPPATFSDSDNGRVQIIDSLVCGGSYIRGSRIEKSVLGFRSNIASACDISESILLG-------------------NVKVGKGCVLRRVIVDKGADIAPGTEI 376          
The following BLAST results are available for this feature:
BLAST of EY680188 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 287
Match NameE-valueIdentityDescription
GLGC_GEOMG2.130e-1528.45Glucose-1-phosphate adenylyltransferase OS=Geobact... [more]
GLGC_BURP82.130e-1526.17Glucose-1-phosphate adenylyltransferase OS=Burkhol... [more]
GLGC_ANAD22.130e-1528.08Glucose-1-phosphate adenylyltransferase OS=Anaerom... [more]
GLGC_MANSM2.782e-1528.76Glucose-1-phosphate adenylyltransferase OS=Mannhei... [more]
GLGC_LACS12.782e-1530.77Glucose-1-phosphate adenylyltransferase OS=Lactoba... [more]
GLGC_CLOPS2.782e-1529.26Glucose-1-phosphate adenylyltransferase OS=Clostri... [more]
GLGC_CLOPE2.782e-1529.26Glucose-1-phosphate adenylyltransferase OS=Clostri... [more]
GLGC1_VIBPA2.782e-1527.86Glucose-1-phosphate adenylyltransferase 1 OS=Vibri... [more]
GLGC_VIBFM3.633e-1529.83Glucose-1-phosphate adenylyltransferase OS=Vibrio ... [more]
GLGC_VIBF13.633e-1529.83Glucose-1-phosphate adenylyltransferase OS=Vibrio ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-650-008-D02-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY680188 ID=EY680188; Name=EY680188; organism=Citrus sinensis; type=EST; length=873bp
CCACGCGTCCGGGTATTTATGTCATCAGCAAAGATGTGATGTTAAATCTG
CTAAGGGATAAATTTCCTGGAGCTAATGATTTTGGAAGTGAAGTTATCCC
TGGTGCAACTTCCATTGGGATGAGAGTGCAAGCATATTTATATGATGGCT
ACTGGGAAGACATTGGAACAATTGAGGCTTTCTACAATGCGAATCTGGGG
ATCACCAAAAAGCCAATTCCGGATTTCAGCTTCTATGACCGTTCTGCTCC
AATCTATACACAGCCTAGATATCTACCTCCTTCTAAGATGCTTGATGCTG
ATGTCACTGATAGTGTAATTGGTGAAGGCTGTGTGATTAAGAATTGCAAA
ATTCACCATTCTGTTGTTGGGCTTCGATCTTGCATATCAGAAGGTGCAAT
TATCGAAGATACTTTACTTATGGGAGCAGATTATTATGAGACGGATGCGG
ACAGGAGGTTTTTGGCTGCAAAGGGTAGTGTTCCAATTGGTATTGGCAAG
AATTCTCACATCAAGAGAGCAATAATCGACAAAAATGCTCGAATTGGGGA
TAATGTGAAGATCGTCAACAGTGACAGTGTGCAAGAAGCAGCAAGGGAAA
CAGATGGAATACTTTCATCAAGAGCGGGGATTGTCACAATTAATCCAAGG
ATGCTTTGAATTCCAAGTGGAACCATAATCTAAACTGTCCTCTTCCCTTC
CCATTTTCATCCCAAGCTACCGGGCCCCTCCCCTCCAACCCCCGAAAAGG
CCCTAAAATCCCAGCCTGCTTCCCCCTTTACCTTTGGCCCTCTTTTTTCC
CAAAACCCGTTAATTTTCCGGGGCGGGGGTAAGGTTATTTTTGAAAAGAG
AAAAAAGGACCCTGGGAAAAAGG
back to top