EY680143

Overview
NameEY680143
Unique NameEY680143
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length915
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY680143 vs. ExPASy Swiss-Prot
Match: CSLD4_ORYSJ (Cellulose synthase-like protein D4 OS=Oryza sativa subsp. japonica GN=CSLD4 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 4.626e-24
Identity = 52/117 (44.44%), Postives = 76/117 (64.96%), Query Frame = 3
Query:    3 ELPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYF--XXXXXXXXXXXXXXQDWKNMKKEYDKLSQNI 347
            +LP +D+FVT+AD E EPP++T NT+LS+LA DYPV KLACY+SDD  + L+F +L E + FA+ WVPFC+K+ V+ R P  YF                ++ + +K+EYD+    +
Sbjct:  407 DLPGIDVFVTSADPEKEPPLVTANTILSILAADYPVEKLACYLSDDGGALLSFEALAETASFARTWVPFCRKHGVEPRCPEAYFGQKRDFLKNKVRVDFVRERRKVKREYDEFKVRV 523          
BLAST of EY680143 vs. ExPASy Swiss-Prot
Match: CSLF9_ORYSJ (Probable mixed-linked glucan synthase 9 OS=Oryza sativa subsp. japonica GN=CSLF9 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 1.031e-23
Identity = 71/227 (31.28%), Postives = 110/227 (48.46%), Query Frame = 3
Query:    6 LPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYFXXXXXXXXXXXXXXQ---DWKNMKKEYDKLSQNIE-------------------HAAKRSSLFDLTGGMTVFS----NTERMNHPTIVKVISENKG------------------GLSDEIPHLVYISREKRPKHPHHYKAGAMN 554
            LP +D+F+ T D   EP + T+N++LS+LA DYP  + A Y+SDD  S  ++  L+E ++FA LWVPFC+K+ V+ RAP  YF              +   D + +++EY++    ++                     AK + + D T     ++    N ++  H  IVKV+  + G                   +   +P LVYI+REKRP + H  KAGAMN
Sbjct:  151 LPGIDVFINTVDPVDEPMLYTMNSILSILATDYPADRHAAYLSDDGASLAHYEGLIETARFAALWVPFCRKHRVEPRAPESYFAAKAAPYAGPALPEEFFGDRRLVRREYEEFKARLDALFTDIPQRSEASVGNANTKGAKATLMADGTPWPGTWTEPAENHKKGQHAGIVKVMLSHPGEEPQLGMPASSGHPLDFSAVDVRLPILVYIAREKRPGYDHQKKAGAMN 377          
BLAST of EY680143 vs. ExPASy Swiss-Prot
Match: CSLD6_ARATH (Putative cellulose synthase-like protein D6 OS=Arabidopsis thaliana GN=CSLD6 PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.346e-23
Identity = 47/84 (55.95%), Postives = 67/84 (79.76%), Query Frame = 3
Query:    3 ELPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYF 254
            +LP +D+FV+TADAE EPP++T NT+LS+L+VDYPV KL+ Y+SDD  S + F ++ EA+ FAK+WVPFC+K+ ++ R P  YF
Sbjct:  202 DLPGIDVFVSTADAEKEPPLVTANTILSILSVDYPVEKLSVYISDDGGSLVTFEAIAEAASFAKIWVPFCRKHKIEPRNPESYF 285          
BLAST of EY680143 vs. ExPASy Swiss-Prot
Match: CSLD5_ORYSJ (Cellulose synthase-like protein D5 OS=Oryza sativa subsp. japonica GN=CSLD5 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 2.296e-23
Identity = 75/243 (30.86%), Postives = 115/243 (47.33%), Query Frame = 3
Query:    3 ELPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYF--XXXXXXXXXXXXXXQDWKNMKKEYD-------------------------KLSQNIEHAAKRSSLFDLTGGMTVFSNTE-------------RMNHPTIVKVISENK------GGLSD-----------EIPHLVYISREKRPKHPHHYKAGAMNVL 560
            +LP +D+F++TAD   EP ++T NT+LS+LA +YPV KL  Y+SDD  + L F S+ EA  FAK+WVPFC+K++++ R P  YF                +D + +K+EYD                         KL+++ + A    +L  +     +   T              + +H +IV+V+ +N       G   D            IP   Y+SREKR  + H+ KAGAMN +
Sbjct:  235 DLPGLDVFISTADPYKEPTLVTANTLLSILATEYPVEKLFVYISDDGGALLTFESMAEACAFAKVWVPFCRKHSIEPRNPDSYFTQKGDPTKGKKRPDFVKDRRWIKREYDEFKIRVNSLPDLIRRRANALNARERKLARDKQAAGDADALASVKAATWMADGTHWPGTWLDPSPDHAKGDHASIVQVMIKNPHHDVVYGEAGDHPYLDMTDVDMRIPMFAYLSREKRAGYDHNKKAGAMNAM 477          
BLAST of EY680143 vs. ExPASy Swiss-Prot
Match: CSLD5_ORYSI (Putative cellulose synthase-like protein D5 OS=Oryza sativa subsp. indica GN=CSLD5 PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 2.296e-23
Identity = 75/243 (30.86%), Postives = 115/243 (47.33%), Query Frame = 3
Query:    3 ELPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYF--XXXXXXXXXXXXXXQDWKNMKKEYD-------------------------KLSQNIEHAAKRSSLFDLTGGMTVFSNTE-------------RMNHPTIVKVISENK------GGLSD-----------EIPHLVYISREKRPKHPHHYKAGAMNVL 560
            +LP +D+F++TAD   EP ++T NT+LS+LA +YPV KL  Y+SDD  + L F S+ EA  FAK+WVPFC+K++++ R P  YF                +D + +K+EYD                         KL+++ + A    +L  +     +   T              + +H +IV+V+ +N       G   D            IP   Y+SREKR  + H+ KAGAMN +
Sbjct:  235 DLPGLDVFISTADPYKEPTLVTANTLLSILATEYPVEKLFVYISDDGGALLTFESMAEACAFAKVWVPFCRKHSIEPRNPDSYFTQKGDPTKGKKRPDFVKDRRWIKREYDEFKIRVNSLPDLIRRRANALNARERKLARDKQAAGDADALASVKAATWMADGTHWPGTWLDPSPDHAKGDHASIVQVMIKNPHHDVVYGEAGDHPYLDMTDVDMRIPMFAYLSREKRAGYDHNKKAGAMNAM 477          
The following BLAST results are available for this feature:
BLAST of EY680143 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
CSLD4_ORYSJ4.626e-2444.44Cellulose synthase-like protein D4 OS=Oryza sativa... [more]
CSLF9_ORYSJ1.031e-2331.28Probable mixed-linked glucan synthase 9 OS=Oryza s... [more]
CSLD6_ARATH1.346e-2355.95Putative cellulose synthase-like protein D6 OS=Ara... [more]
CSLD5_ORYSJ2.296e-2330.86Cellulose synthase-like protein D5 OS=Oryza sativa... [more]
CSLD5_ORYSI2.296e-2330.86Putative cellulose synthase-like protein D5 OS=Ory... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-007-H05-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY680143 ID=EY680143; Name=EY680143; organism=Citrus sinensis; type=EST; length=915bp
AGGAGCTGCCCCCAGTGGACATGTTTGTGACAACTGCTGATGCTGAACTC
GAGCCGCCAATCATCACTGTAAACACAGTGCTGTCTTTGTTGGCAGTTGA
TTATCCAGTTCACAAGCTCGCTTGCTATGTTTCTGATGATGCCTGCTCAC
CTCTCAATTTCTACTCTCTTGTTGAAGCTTCTAAATTCGCTAAGCTTTGG
GTTCCATTCTGTAAAAAGTATAATGTTCAAATTAGAGCTCCCTTTAGATA
CTTCCCAGATAGTGAGCCGTCCGATTCCAGTTCAGGGGAACTCCTGCAAG
ACTGGAAAAACATGAAGAAAGAGTATGATAAACTTAGCCAAAACATAGAA
CATGCAGCCAAAAGATCTTCTTTATTTGATCTAACAGGAGGAATGACTGT
TTTCTCCAATACAGAACGCATGAATCATCCAACAATAGTGAAGGTTATAT
CGGAGAACAAAGGAGGTCTCTCAGATGAGATACCACATTTAGTTTACATA
TCAAGAGAGAAAAGGCCAAAGCATCCCCATCACTACAAAGCAGGGGCCAT
GAATGTATTGACTGCGACATGTATGCCAACAATCCAGAGATTGTTCTTCA
AGCTATGTGTTTTGCATCTGGGCTCCAAGAACGAAAAACGAATTTGCGTT
TATTCAATCTCCACCATATTTCTATGACAGAACCAGAAAATCTGTGCCTT
TTAAATGAGTATATCGGGAAAAGAAATTTGGGGAATTTCAGGACCTTTCC
TTTCAGGGTACACGGAACCTTTTTCTTAAACAAAAATGTTTGAAAATGGG
CCCATTCCCTCCTTTTAAAATTTGAAACATCCAAGGGAAAATAAGGGGGG
AAAAAAAAAACCTGCTTGAAAAAAATTTCCGGAAAATTTTCAAAAAAAAA
TTTCTTTCAAAATTC
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