EY680065

Overview
NameEY680065
Unique NameEY680065
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length882
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY680065 vs. ExPASy Swiss-Prot
Match: RL24_SYNP6 (50S ribosomal protein L24 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=rplX PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.274e-23
Identity = 58/108 (53.70%), Postives = 70/108 (64.81%), Query Frame = 1
Query:  220 PVLHKMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVXXXXXXXXXXXXXXXAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGEIID 543
            PV H +HVK GDTV+VIAG DKG +GE+ +VF   S V+VK +NL+TKHV               A IHSSNV LYS   +VASRV +   +DG +VR L KTGEIID
Sbjct:    6 PVRHSVHVKKGDTVQVIAGKDKGTVGEVLQVFPKTSRVLVKGVNLRTKHVKPRQEGESGQIVVEEASIHSSNVQLYSTTQKVASRVAYTFTEDGRKVRKLKKTGEIID 113          
BLAST of EY680065 vs. ExPASy Swiss-Prot
Match: RL24_SYNE7 (50S ribosomal protein L24 OS=Synechococcus elongatus (strain PCC 7942) GN=rplX PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.274e-23
Identity = 58/108 (53.70%), Postives = 70/108 (64.81%), Query Frame = 1
Query:  220 PVLHKMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVXXXXXXXXXXXXXXXAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGEIID 543
            PV H +HVK GDTV+VIAG DKG +GE+ +VF   S V+VK +NL+TKHV               A IHSSNV LYS   +VASRV +   +DG +VR L KTGEIID
Sbjct:    6 PVRHSVHVKKGDTVQVIAGKDKGTVGEVLQVFPKTSRVLVKGVNLRTKHVKPRQEGESGQIVVEEASIHSSNVQLYSTTQKVASRVAYTFTEDGRKVRKLKKTGEIID 113          
BLAST of EY680065 vs. ExPASy Swiss-Prot
Match: RL24_NOSP7 (50S ribosomal protein L24 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=rplX PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.274e-23
Identity = 60/113 (53.10%), Postives = 71/113 (62.83%), Query Frame = 1
Query:  205 KPNSLPVLHKMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVXXXXXXXXXXXXXXXAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGEIID 543
            K  +  V HKMHVK GDTV+VIAG DKGKIGEI +     S V+VK +N+KTKHV                PIHSSNVMLYS +  VASRV +    +G +VR L KTGEI+D
Sbjct:    4 KQGTPKVFHKMHVKTGDTVQVIAGKDKGKIGEIVQALPQLSKVIVKGVNIKTKHVKPQQEGESGRIVTQEFPIHSSNVMLYSTKQNVASRVCYTFTSEGKKVRKLKKTGEILD 116          
BLAST of EY680065 vs. ExPASy Swiss-Prot
Match: RL24_SYNY3 (50S ribosomal protein L24 OS=Synechocystis sp. (strain PCC 6803) GN=rplX PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.708e-23
Identity = 56/113 (49.56%), Postives = 73/113 (64.60%), Query Frame = 1
Query:  205 KPNSLPVLHKMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVXXXXXXXXXXXXXXXAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGEIID 543
            K    P   KMHVK GDT++VI+G DKGK+GE+ +    +S V+VK +N++TKHV               APIHSS VMLYS + ++ASR+ + V DDG +VR L KTGEIID
Sbjct:    3 KTKPAPHRVKMHVKKGDTIQVISGKDKGKVGEVLRTIPSHSQVVVKGVNIRTKHVKPRQEGESGQISSYEAPIHSSKVMLYSTKEKIASRICYTVTDDGRKVRMLKKTGEIID 115          
BLAST of EY680065 vs. ExPASy Swiss-Prot
Match: RL24_ACAM1 (50S ribosomal protein L24 OS=Acaryochloris marina (strain MBIC 11017) GN=rplX PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 2.034e-21
Identity = 58/113 (51.33%), Postives = 69/113 (61.06%), Query Frame = 1
Query:  205 KPNSLPVLHKMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVXXXXXXXXXXXXXXXAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGEIID 543
            K  S    +KMHVK GDTV+VIAG DK K+GE+  V    S V+V+ +N+KTKHV                PIHSSNVMLYS +  VASRV +   D G +VR L KTGEIID
Sbjct:    3 KKKSTAKRYKMHVKKGDTVQVIAGKDKAKVGEVIDVLPKLSQVVVEGVNMKTKHVKPRSESESGQISTVEFPIHSSNVMLYSNKENVASRVCYTFDDSGRKVRMLKKTGEIID 115          
BLAST of EY680065 vs. ExPASy Swiss-Prot
Match: RL24_SYNJA (50S ribosomal protein L24 OS=Synechococcus sp. (strain JA-3-3Ab) GN=rplX PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.657e-21
Identity = 51/105 (48.57%), Postives = 70/105 (66.67%), Query Frame = 1
Query:  229 HKMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVXXXXXXXXXXXXXXXAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGEIID 543
            +KM +K GDTV+VI+G DKGKIGE+ +VF   + V+V+ +N+ T H                APIH+  VMLYSK+ EVASR+G+++  DG +VR L KTGEI+D
Sbjct:   28 YKMRIKKGDTVQVISGDDKGKIGEVLQVFPERNMVLVEGVNIVTYHRKPQREGESGRIETKEAPIHACKVMLYSKKQEVASRIGYQITADGRKVRVLKKTGEILD 132          
BLAST of EY680065 vs. ExPASy Swiss-Prot
Match: RL24_GLOVI (50S ribosomal protein L24 OS=Gloeobacter violaceus GN=rplX PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 8.548e-20
Identity = 52/105 (49.52%), Postives = 69/105 (65.71%), Query Frame = 1
Query:  229 HKMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVXXXXXXXXXXXXXXXAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGEIID 543
            HK HVK GDTV+VI+G DKGK+G++++V      V+V+ +N++TKHV               API+S  VMLYS + + ASRVGH V D G +VR L KTGEI+D
Sbjct:   12 HKFHVKKGDTVQVISGKDKGKVGKVSEVLPTAGKVIVEGVNMQTKHV-KPQGDQQGQTLRREAPIYSCKVMLYSDKKKQASRVGHTVTDAGKKVRVLKKTGEILD 115          
BLAST of EY680065 vs. ExPASy Swiss-Prot
Match: RK24_RHDSA (50S ribosomal protein L24, chloroplastic OS=Rhodomonas salina GN=rpl24 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.904e-19
Identity = 48/97 (49.48%), Postives = 65/97 (67.01%), Query Frame = 1
Query:  235 MHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVXXXXXXXXXXXXXXXAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIK 525
            MHVK GDTVK++ G DKGKIGEITK+ + ++ V+V+DIN+K KHV               APIHSSNVM+Y+ E +VASRV ++  + G ++R   K
Sbjct:    1 MHVKQGDTVKILTGKDKGKIGEITKIIKGSNQVVVQDINVKKKHVKPRKEGEIGKILQFEAPIHSSNVMVYNAESQVASRVNYQKDESGKKIRVFKK 97          
BLAST of EY680065 vs. ExPASy Swiss-Prot
Match: RL24_SYNJB (50S ribosomal protein L24 OS=Synechococcus sp. GN=rplX PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.487e-19
Identity = 49/105 (46.67%), Postives = 67/105 (63.81%), Query Frame = 1
Query:  229 HKMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVXXXXXXXXXXXXXXXAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGEIID 543
            +KM +K GDTV+VI+G DKGKIGE+ +VF   + V+V+ +N+ T H                API    VM YSK+ EVASR+G+++  DG +VR L KTGEI+D
Sbjct:   28 YKMRIKQGDTVQVISGDDKGKIGEVLRVFPERNMVLVEGVNIVTYHRKPQREGESGRIETKEAPIPVCKVMAYSKKQEVASRIGYQITADGRKVRVLKKTGEILD 132          
BLAST of EY680065 vs. ExPASy Swiss-Prot
Match: RL24_ANASP (50S ribosomal protein L24 OS=Anabaena sp. (strain PCC 7120) GN=rplX PE=3 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 3.248e-19
Identity = 58/148 (39.19%), Postives = 74/148 (50.00%), Query Frame = 1
Query:  205 KPNSLPVLHKMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTK----------------------------------HVXXXXXXXXXXXXXXXAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGEIIDS 546
            K ++ P  HK+HVK GDTV++IAG DKGK+GE+ K     S V+VK +N+KTK                                  HV               APIHSSNVMLYS +  VASRV +    +G +VR L KTGEI+D+
Sbjct:    2 KKDTTPKFHKLHVKTGDTVQIIAGKDKGKVGEVIKALPQLSKVVVKGVNIKTKQIIAGKDKGKVGEVIKALPQLSKVVVKGVNIKTKHVKPQQEGESGRIVTQEAPIHSSNVMLYSTKQNVASRVCYTFTAEGKKVRKLKKTGEILDN 149          
The following BLAST results are available for this feature:
BLAST of EY680065 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 175
Match NameE-valueIdentityDescription
RL24_SYNP61.274e-2353.7050S ribosomal protein L24 OS=Synechococcus sp. (st... [more]
RL24_SYNE71.274e-2353.7050S ribosomal protein L24 OS=Synechococcus elongat... [more]
RL24_NOSP71.274e-2353.1050S ribosomal protein L24 OS=Nostoc punctiforme (s... [more]
RL24_SYNY33.708e-2349.5650S ribosomal protein L24 OS=Synechocystis sp. (st... [more]
RL24_ACAM12.034e-2151.3350S ribosomal protein L24 OS=Acaryochloris marina ... [more]
RL24_SYNJA2.657e-2148.5750S ribosomal protein L24 OS=Synechococcus sp. (st... [more]
RL24_GLOVI8.548e-2049.5250S ribosomal protein L24 OS=Gloeobacter violaceus... [more]
RK24_RHDSA1.904e-1949.4850S ribosomal protein L24, chloroplastic OS=Rhodom... [more]
RL24_SYNJB2.487e-1946.6750S ribosomal protein L24 OS=Synechococcus sp. GN=... [more]
RL24_ANASP3.248e-1939.1950S ribosomal protein L24 OS=Anabaena sp. (strain ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-007-A09-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY680065 ID=EY680065; Name=EY680065; organism=Citrus sinensis; type=EST; length=882bp
AAGAGTTGGAGAGAACAAGCAGCAGCAGCAAAAATGGCAGCAATGGCTGC
ACTTCAAAGCTCAATGACGTCACTTTCCATCTCCTCGAACTCCTTCTTTG
GCCAACGCCTCTCTTTCCCCTCTCTTTCTCCCGTAACTGTCAAGCCGACA
GACAAACCATGTCTCATTGTAGTGAGGCTTAAACGGTGGGAAAGAAAGGA
ATGCAAGCCAAATAGCCTTCCAGTTTTACACAAAATGCATGTTAAGGCGG
GAGATACAGTTAAAGTCATAGCCGGTTGTGACAAGGGTAAAATTGGAGAG
ATTACTAAGGTCTTTAGGCACAACAGCACGGTGATGGTCAAAGACATAAA
TCTCAAGACAAAGCATGTGAAGAAGAGAGAAGAGGAGGAACAAGGGCAGA
TCATTAAGATTGAAGCACCCATTCACAGCTCTAATGTGATGCTCTACTCA
AAAGAAATGGAAGTAGCAAGCCGGGTGGGTCATAAAGTCCTTGATGATGG
AACACGAGTCCGCTACCTTATAAAAACCGGAGAAATAATTGACAGTGCTG
AAAACTGGAAGAAACTGAAGGAAGCAAATCGCCAAGAGAAAACTGAAGTA
GCTACTGCTGCTTAAAAATCCCCACTCCTGACTTCACCTGTAACGTATTT
TCTGAAAGTCCTTTAATATCTTGGCCACCTGTCCAATTTAGTTTATTAAA
CCTTTGTTGAATCTCATTTCCCTGGGAATTAAAATAGTCATTCTGGGTTT
TTGGTGGGCCCAATGGCAAACTAAAAAATAGAATTTTTGAAAGCCCAACT
TTGAAGTTTGTTTTTAACTGTTATTTTTGGGAAATACTTAAAAAAAAAAT
TTTGCCCGGGGGGCCAAAAAAAAAAAAAAAAA
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