EY680065

Overview
NameEY680065
Unique NameEY680065
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length882
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY680065 vs. ExPASy Swiss-Prot
Match: RL24_COXBR (50S ribosomal protein L24 OS=Coxiella burnetii (strain RSA 331 / Henzerling II) GN=rplX PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.473e-11
Identity = 42/102 (41.18%), Postives = 56/102 (54.90%), Query Frame = 1
Query:  241 VKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVXXXXXXXXXXXXXXXA-PIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGEIID 543
            +K  DTV VI G DKG+ G++ KV   NS ++V+ INL  KHV                  IH SNV +Y+   + A RVG K L+DG++VR     GE+ID
Sbjct:    6 IKKDDTVIVITGRDKGRQGKVLKVLP-NSRLLVEGINLVKKHVKPNPNKNEQGGILERELSIHVSNVAIYNPAAKKADRVGIKTLEDGSKVRIFKSNGEVID 106          
BLAST of EY680065 vs. ExPASy Swiss-Prot
Match: RL24_COXBN (50S ribosomal protein L24 OS=Coxiella burnetii (strain Dugway 5J108-111) GN=rplX PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.473e-11
Identity = 42/102 (41.18%), Postives = 56/102 (54.90%), Query Frame = 1
Query:  241 VKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVXXXXXXXXXXXXXXXA-PIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGEIID 543
            +K  DTV VI G DKG+ G++ KV   NS ++V+ INL  KHV                  IH SNV +Y+   + A RVG K L+DG++VR     GE+ID
Sbjct:    6 IKKDDTVIVITGRDKGRQGKVLKVLP-NSRLLVEGINLVKKHVKPNPNKNEQGGILERELSIHVSNVAIYNPAAKKADRVGIKTLEDGSKVRIFKSNGEVID 106          
BLAST of EY680065 vs. ExPASy Swiss-Prot
Match: RL24_COXB2 (50S ribosomal protein L24 OS=Coxiella burnetii (strain CbuG_Q212) GN=rplX PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.473e-11
Identity = 42/102 (41.18%), Postives = 56/102 (54.90%), Query Frame = 1
Query:  241 VKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVXXXXXXXXXXXXXXXA-PIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGEIID 543
            +K  DTV VI G DKG+ G++ KV   NS ++V+ INL  KHV                  IH SNV +Y+   + A RVG K L+DG++VR     GE+ID
Sbjct:    6 IKKDDTVIVITGRDKGRQGKVLKVLP-NSRLLVEGINLVKKHVKPNPNKNEQGGILERELSIHVSNVAIYNPAAKKADRVGIKTLEDGSKVRIFKSNGEVID 106          
BLAST of EY680065 vs. ExPASy Swiss-Prot
Match: RL24_COXB1 (50S ribosomal protein L24 OS=Coxiella burnetii (strain CbuK_Q154) GN=rplX PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.473e-11
Identity = 42/102 (41.18%), Postives = 56/102 (54.90%), Query Frame = 1
Query:  241 VKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVXXXXXXXXXXXXXXXA-PIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGEIID 543
            +K  DTV VI G DKG+ G++ KV   NS ++V+ INL  KHV                  IH SNV +Y+   + A RVG K L+DG++VR     GE+ID
Sbjct:    6 IKKDDTVIVITGRDKGRQGKVLKVLP-NSRLLVEGINLVKKHVKPNPNKNEQGGILERELSIHVSNVAIYNPAAKKADRVGIKTLEDGSKVRIFKSNGEVID 106          
BLAST of EY680065 vs. ExPASy Swiss-Prot
Match: RL24_ALHEH (50S ribosomal protein L24 OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=rplX PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.473e-11
Identity = 34/102 (33.33%), Postives = 55/102 (53.92%), Query Frame = 1
Query:  241 VKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKH-VXXXXXXXXXXXXXXXAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGEIID 543
            ++ GD V +IAG DKG+ G + +V+     ++V+++N+  +H                  PIH SNV LY+   E   RVG +VL+DG++ RY     E++D
Sbjct:    4 IRQGDDVVIIAGKDKGRRGRVIRVYPDQEKLLVENVNVVKRHRKGNPQQGEAGGIIEQEKPIHQSNVALYNPATEKGDRVGIRVLEDGSKARYFKSNNELVD 105          
The following BLAST results are available for this feature:
BLAST of EY680065 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 175
Match NameE-valueIdentityDescription
RL24_COXBR9.473e-1141.1850S ribosomal protein L24 OS=Coxiella burnetii (st... [more]
RL24_COXBN9.473e-1141.1850S ribosomal protein L24 OS=Coxiella burnetii (st... [more]
RL24_COXB29.473e-1141.1850S ribosomal protein L24 OS=Coxiella burnetii (st... [more]
RL24_COXB19.473e-1141.1850S ribosomal protein L24 OS=Coxiella burnetii (st... [more]
RL24_ALHEH9.473e-1133.3350S ribosomal protein L24 OS=Alkalilimnicola ehrli... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-007-A09-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY680065 ID=EY680065; Name=EY680065; organism=Citrus sinensis; type=EST; length=882bp
AAGAGTTGGAGAGAACAAGCAGCAGCAGCAAAAATGGCAGCAATGGCTGC
ACTTCAAAGCTCAATGACGTCACTTTCCATCTCCTCGAACTCCTTCTTTG
GCCAACGCCTCTCTTTCCCCTCTCTTTCTCCCGTAACTGTCAAGCCGACA
GACAAACCATGTCTCATTGTAGTGAGGCTTAAACGGTGGGAAAGAAAGGA
ATGCAAGCCAAATAGCCTTCCAGTTTTACACAAAATGCATGTTAAGGCGG
GAGATACAGTTAAAGTCATAGCCGGTTGTGACAAGGGTAAAATTGGAGAG
ATTACTAAGGTCTTTAGGCACAACAGCACGGTGATGGTCAAAGACATAAA
TCTCAAGACAAAGCATGTGAAGAAGAGAGAAGAGGAGGAACAAGGGCAGA
TCATTAAGATTGAAGCACCCATTCACAGCTCTAATGTGATGCTCTACTCA
AAAGAAATGGAAGTAGCAAGCCGGGTGGGTCATAAAGTCCTTGATGATGG
AACACGAGTCCGCTACCTTATAAAAACCGGAGAAATAATTGACAGTGCTG
AAAACTGGAAGAAACTGAAGGAAGCAAATCGCCAAGAGAAAACTGAAGTA
GCTACTGCTGCTTAAAAATCCCCACTCCTGACTTCACCTGTAACGTATTT
TCTGAAAGTCCTTTAATATCTTGGCCACCTGTCCAATTTAGTTTATTAAA
CCTTTGTTGAATCTCATTTCCCTGGGAATTAAAATAGTCATTCTGGGTTT
TTGGTGGGCCCAATGGCAAACTAAAAAATAGAATTTTTGAAAGCCCAACT
TTGAAGTTTGTTTTTAACTGTTATTTTTGGGAAATACTTAAAAAAAAAAT
TTTGCCCGGGGGGCCAAAAAAAAAAAAAAAAA
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