EY680065

Overview
NameEY680065
Unique NameEY680065
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length882
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY680065 vs. ExPASy Swiss-Prot
Match: RL24_CLOTE (50S ribosomal protein L24 OS=Clostridium tetani GN=rplX PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.105e-18
Identity = 47/102 (46.08%), Postives = 64/102 (62.75%), Query Frame = 1
Query:  229 HKMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVXXXXXXXXXXXXXXXAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGE 534
            +K+HV+  DTV VI+G DKGKIGE+ +V   +  V+VKD+N+ TKH                API+SS VMLY  + +  +R+ HK+LDDGT+VR   K GE
Sbjct:    3 NKVHVRKQDTVMVISGKDKGKIGEVLRVLPKSGKVVVKDVNVVTKHQKPSRENMQGGIIHVEAPIYSSKVMLYCTKCKSVTRINHKILDDGTKVRVCKKCGE 104          
BLAST of EY680065 vs. ExPASy Swiss-Prot
Match: RL24_SYNR3 (50S ribosomal protein L24 OS=Synechococcus sp. (strain RCC307) GN=rplX PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 3.040e-17
Identity = 47/108 (43.52%), Postives = 66/108 (61.11%), Query Frame = 1
Query:  220 PVLHKMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVXXXXXXXXXXXXXXXAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGEIID 543
            P   KM ++ GDTV+VIAG DKGK GE+ +     + V+V+ +NL+T+HV               A +H+SNVM+YS + +VASRV   V  DG + R L KTGE++D
Sbjct:    6 PTRTKMRIRKGDTVQVIAGKDKGKTGEVLRTLPWENRVVVQGVNLRTRHVKPAQEGESGRIVTEEASLHASNVMVYSTDKKVASRVEIVVDKDGNKKRKLKKTGELLD 113          
BLAST of EY680065 vs. ExPASy Swiss-Prot
Match: RL24_PROM1 (50S ribosomal protein L24 OS=Prochlorococcus marinus (strain NATL1A) GN=rplX PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.971e-17
Identity = 47/104 (45.19%), Postives = 66/104 (63.46%), Query Frame = 1
Query:  232 KMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVXXXXXXXXXXXXXXXAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGEIID 543
            KM ++ GDTV+VI+G DKGK GE+ K   + + V+V+ IN +TKHV                P+H+SNVM+YS + +VAS+V   V  DG++ R L KTGE+ID
Sbjct:   15 KMKIRKGDTVQVISGKDKGKTGEVLKTLPYENRVLVQGINQRTKHVKPSQEGETGRIETKEFPLHASNVMIYSTKEKVASKVEIFVDKDGSKKRRLKKTGELID 118          
BLAST of EY680065 vs. ExPASy Swiss-Prot
Match: RL24_SYNSC (50S ribosomal protein L24 OS=Synechococcus sp. (strain CC9605) GN=rplX PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 8.845e-17
Identity = 45/104 (43.27%), Postives = 65/104 (62.50%), Query Frame = 1
Query:  232 KMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVXXXXXXXXXXXXXXXAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGEIID 543
            KM ++ GDTV+VIAG DKGK G + +   + + V+V+ +N++T+H                A +H+SNVMLYS + +VASRV   V  DGT+ R L KTGE++D
Sbjct:   15 KMRIRKGDTVQVIAGKDKGKTGAVLRTLPNENRVVVEGVNMRTRHEKPTQEGETGRIVTEEASLHASNVMLYSTDKKVASRVEIVVEKDGTKKRRLKKTGEVLD 118          
BLAST of EY680065 vs. ExPASy Swiss-Prot
Match: RL24_SYNS9 (50S ribosomal protein L24 OS=Synechococcus sp. (strain CC9902) GN=rplX PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 8.845e-17
Identity = 45/104 (43.27%), Postives = 65/104 (62.50%), Query Frame = 1
Query:  232 KMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVXXXXXXXXXXXXXXXAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGEIID 543
            KM ++ GDTV+VIAG DKGK G + +   + + V+V+ +N++T+H                A +H+SNVMLYS + +VASRV   V  DGT+ R L KTGE++D
Sbjct:   15 KMRIRKGDTVQVIAGKDKGKTGAVLRTLPNENRVIVEGVNMRTRHEKPSQEGESGRIVTEEASLHASNVMLYSTDKKVASRVEIVVEKDGTKKRKLKKTGEVLD 118          
BLAST of EY680065 vs. ExPASy Swiss-Prot
Match: RL24_SYNPW (50S ribosomal protein L24 OS=Synechococcus sp. (strain WH7803) GN=rplX PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 8.845e-17
Identity = 46/104 (44.23%), Postives = 65/104 (62.50%), Query Frame = 1
Query:  232 KMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVXXXXXXXXXXXXXXXAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGEIID 543
            KM ++ GDTV+VIAG DKGK GE+ +   + + V+V+ +N++T+HV               A +H+SNVMLYS   +VASRV      DG++ R L KTGE+ID
Sbjct:   15 KMRLRKGDTVQVIAGKDKGKTGEVLRTLPNENRVIVEGVNMRTRHVKPTQEGESGRIVTEEASLHASNVMLYSTAKKVASRVELITEKDGSKKRRLKKTGEVID 118          
BLAST of EY680065 vs. ExPASy Swiss-Prot
Match: RL24_CLOBM (50S ribosomal protein L24 OS=Clostridium botulinum (strain Loch Maree / Type A3) GN=rplX PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 8.845e-17
Identity = 46/103 (44.66%), Postives = 62/103 (60.19%), Query Frame = 1
Query:  226 LHKMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVXXXXXXXXXXXXXXXAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGE 534
            + K+HV+  DTV VI+G DKGKIGE+  V      V+VKD+N+ TKH                API SS VMLY  + + A+R+ +K+L+DGT+VR   K GE
Sbjct:    1 MSKIHVRKKDTVVVISGKDKGKIGEVLSVLPKKGKVIVKDVNVVTKHQKPNRENMQGGIIHKEAPIFSSKVMLYCDKCKSATRISNKILEDGTKVRVCKKCGE 103          
BLAST of EY680065 vs. ExPASy Swiss-Prot
Match: RL24_CLOBL (50S ribosomal protein L24 OS=Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) GN=rplX PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 8.845e-17
Identity = 46/103 (44.66%), Postives = 62/103 (60.19%), Query Frame = 1
Query:  226 LHKMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVXXXXXXXXXXXXXXXAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGE 534
            + K+HV+  DTV VI+G DKGKIGE+  V      V+VKD+N+ TKH                API SS VMLY  + + A+R+ +K+L+DGT+VR   K GE
Sbjct:    1 MSKIHVRKKDTVVVISGKDKGKIGEVLSVLPKKGKVIVKDVNVVTKHQKPNRENMQGGIIHKEAPIFSSKVMLYCDKCKSATRISNKILEDGTKVRVCKKCGE 103          
BLAST of EY680065 vs. ExPASy Swiss-Prot
Match: RL24_CLOBK (50S ribosomal protein L24 OS=Clostridium botulinum (strain Okra / Type B1) GN=rplX PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 8.845e-17
Identity = 46/103 (44.66%), Postives = 62/103 (60.19%), Query Frame = 1
Query:  226 LHKMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVXXXXXXXXXXXXXXXAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGE 534
            + K+HV+  DTV VI+G DKGKIGE+  V      V+VKD+N+ TKH                API SS VMLY  + + A+R+ +K+L+DGT+VR   K GE
Sbjct:    1 MSKIHVRKKDTVVVISGKDKGKIGEVLSVLPKKGKVIVKDVNVVTKHQKPNRENMQGGIIHKEAPIFSSKVMLYCDKCKSATRISNKILEDGTKVRVCKKCGE 103          
BLAST of EY680065 vs. ExPASy Swiss-Prot
Match: RL24_CLOB6 (50S ribosomal protein L24 OS=Clostridium botulinum (strain 657 / Type Ba4) GN=rplX PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 8.845e-17
Identity = 46/103 (44.66%), Postives = 62/103 (60.19%), Query Frame = 1
Query:  226 LHKMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVXXXXXXXXXXXXXXXAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGE 534
            + K+HV+  DTV VI+G DKGKIGE+  V      V+VKD+N+ TKH                API SS VMLY  + + A+R+ +K+L+DGT+VR   K GE
Sbjct:    1 MSKIHVRKKDTVVVISGKDKGKIGEVLSVLPKKGKVIVKDVNVVTKHQKPNRENMQGGIIHKEAPIFSSKVMLYCDKCKSATRISNKILEDGTKVRICKKCGE 103          
The following BLAST results are available for this feature:
BLAST of EY680065 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 175
Match NameE-valueIdentityDescription
RL24_CLOTE2.105e-1846.0850S ribosomal protein L24 OS=Clostridium tetani GN... [more]
RL24_SYNR33.040e-1743.5250S ribosomal protein L24 OS=Synechococcus sp. (st... [more]
RL24_PROM13.971e-1745.1950S ribosomal protein L24 OS=Prochlorococcus marin... [more]
RL24_SYNSC8.845e-1743.2750S ribosomal protein L24 OS=Synechococcus sp. (st... [more]
RL24_SYNS98.845e-1743.2750S ribosomal protein L24 OS=Synechococcus sp. (st... [more]
RL24_SYNPW8.845e-1744.2350S ribosomal protein L24 OS=Synechococcus sp. (st... [more]
RL24_CLOBM8.845e-1744.6650S ribosomal protein L24 OS=Clostridium botulinum... [more]
RL24_CLOBL8.845e-1744.6650S ribosomal protein L24 OS=Clostridium botulinum... [more]
RL24_CLOBK8.845e-1744.6650S ribosomal protein L24 OS=Clostridium botulinum... [more]
RL24_CLOB68.845e-1744.6650S ribosomal protein L24 OS=Clostridium botulinum... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-007-A09-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY680065 ID=EY680065; Name=EY680065; organism=Citrus sinensis; type=EST; length=882bp
AAGAGTTGGAGAGAACAAGCAGCAGCAGCAAAAATGGCAGCAATGGCTGC
ACTTCAAAGCTCAATGACGTCACTTTCCATCTCCTCGAACTCCTTCTTTG
GCCAACGCCTCTCTTTCCCCTCTCTTTCTCCCGTAACTGTCAAGCCGACA
GACAAACCATGTCTCATTGTAGTGAGGCTTAAACGGTGGGAAAGAAAGGA
ATGCAAGCCAAATAGCCTTCCAGTTTTACACAAAATGCATGTTAAGGCGG
GAGATACAGTTAAAGTCATAGCCGGTTGTGACAAGGGTAAAATTGGAGAG
ATTACTAAGGTCTTTAGGCACAACAGCACGGTGATGGTCAAAGACATAAA
TCTCAAGACAAAGCATGTGAAGAAGAGAGAAGAGGAGGAACAAGGGCAGA
TCATTAAGATTGAAGCACCCATTCACAGCTCTAATGTGATGCTCTACTCA
AAAGAAATGGAAGTAGCAAGCCGGGTGGGTCATAAAGTCCTTGATGATGG
AACACGAGTCCGCTACCTTATAAAAACCGGAGAAATAATTGACAGTGCTG
AAAACTGGAAGAAACTGAAGGAAGCAAATCGCCAAGAGAAAACTGAAGTA
GCTACTGCTGCTTAAAAATCCCCACTCCTGACTTCACCTGTAACGTATTT
TCTGAAAGTCCTTTAATATCTTGGCCACCTGTCCAATTTAGTTTATTAAA
CCTTTGTTGAATCTCATTTCCCTGGGAATTAAAATAGTCATTCTGGGTTT
TTGGTGGGCCCAATGGCAAACTAAAAAATAGAATTTTTGAAAGCCCAACT
TTGAAGTTTGTTTTTAACTGTTATTTTTGGGAAATACTTAAAAAAAAAAT
TTTGCCCGGGGGGCCAAAAAAAAAAAAAAAAA
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