EY680065

Overview
NameEY680065
Unique NameEY680065
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length882
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY680065 vs. ExPASy Swiss-Prot
Match: RL24_PROMA (50S ribosomal protein L24 OS=Prochlorococcus marinus GN=rplX PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.155e-16
Identity = 49/115 (42.61%), Postives = 70/115 (60.87%), Query Frame = 1
Query:  199 ECKPNSLPVLHKMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVXXXXXXXXXXXXXXXAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGEIID 543
            + K  SLP+  KM ++ GDTV+VI G +KGK GE+ K     + V+V+ INL+T+HV               A +H+SNVM+YS + + ASRV   +  DG++ R L KTGE+ID
Sbjct:    6 QTKKASLPI--KMRIRKGDTVQVINGKEKGKTGEVLKTLPIENRVIVQGINLRTRHVKPTQEGESGRIVTEEASLHASNVMVYSTKQKTASRVEVFIDKDGSKKRRLKKTGELID 118          
BLAST of EY680065 vs. ExPASy Swiss-Prot
Match: RL24_PROM3 (50S ribosomal protein L24 OS=Prochlorococcus marinus (strain MIT 9303) GN=rplX PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.155e-16
Identity = 45/104 (43.27%), Postives = 63/104 (60.58%), Query Frame = 1
Query:  232 KMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVXXXXXXXXXXXXXXXAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGEIID 543
            KM +  GDTV+VI G DKGK GE+ +     + V+V+ +N++T+HV               A +H+SNVMLYS   ++ASRV   V  DG++ R L KTGE+ID
Sbjct:   15 KMRIHKGDTVQVITGKDKGKTGEVLRTLPIENRVIVQGVNIRTRHVKPTQEGESGRIVTEEASVHASNVMLYSNNKKIASRVALVVEKDGSKKRRLKKTGELID 118          
BLAST of EY680065 vs. ExPASy Swiss-Prot
Match: RL24_PROMS (50S ribosomal protein L24 OS=Prochlorococcus marinus (strain AS9601) GN=rplX PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.509e-16
Identity = 45/104 (43.27%), Postives = 62/104 (59.62%), Query Frame = 1
Query:  232 KMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVXXXXXXXXXXXXXXXAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGEIID 543
            KM +K GD VKVI G DKGK GE+ K     + V+VK INL+TKHV               A +H+SNVM +SK+  + S++ + +  +G + R L KTGE+ID
Sbjct:   15 KMRIKTGDLVKVINGKDKGKTGEVLKTIPLENRVVVKGINLRTKHVKPTQEGETGRILTEEASLHASNVMFFSKDKNLTSKIEYFIDKEGVKKRRLKKTGEVID 118          
BLAST of EY680065 vs. ExPASy Swiss-Prot
Match: RL24_PROMM (50S ribosomal protein L24 OS=Prochlorococcus marinus (strain MIT 9313) GN=rplX PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.509e-16
Identity = 45/104 (43.27%), Postives = 64/104 (61.54%), Query Frame = 1
Query:  232 KMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVXXXXXXXXXXXXXXXAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGEIID 543
            KM +  GDTV+VI G DKGK GE+ +     + V+V+ +N++T+HV               A +H+SNVMLYS + ++ASRV   V  DG++ R L KTGE+ID
Sbjct:   15 KMRIHKGDTVQVITGKDKGKTGEVLRTLPIENRVIVQGVNIRTRHVKPTQEGESGRIVTEEASVHASNVMLYSNKKKIASRVELVVEKDGSKKRRLKKTGELID 118          
BLAST of EY680065 vs. ExPASy Swiss-Prot
Match: RL24_PROM2 (50S ribosomal protein L24 OS=Prochlorococcus marinus (strain MIT 9215) GN=rplX PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.971e-16
Identity = 45/104 (43.27%), Postives = 62/104 (59.62%), Query Frame = 1
Query:  232 KMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVXXXXXXXXXXXXXXXAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGEIID 543
            KM +K GD VKVI G +KGK GE+ K     + V+VK INL+TKHV               A +H+SNVM +SKE  + S++ + +  +G + R L KTGE+ID
Sbjct:   15 KMRIKTGDLVKVINGKEKGKTGEVLKTIPLENKVVVKGINLRTKHVKPTQEGETGRILTEEASLHASNVMFFSKEKNLTSKIEYFIDKEGVKKRRLKKTGEVID 118          
BLAST of EY680065 vs. ExPASy Swiss-Prot
Match: RL24_PROM0 (50S ribosomal protein L24 OS=Prochlorococcus marinus (strain MIT 9301) GN=rplX PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.971e-16
Identity = 45/104 (43.27%), Postives = 62/104 (59.62%), Query Frame = 1
Query:  232 KMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVXXXXXXXXXXXXXXXAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGEIID 543
            KM +K GD VKVI G +KGK GE+ K     + V+VK INL+TKHV               A +H+SNVM +SKE  + S++ + +  +G + R L KTGE+ID
Sbjct:   15 KMRIKTGDLVKVINGKEKGKTGEVLKTIPLENRVVVKGINLRTKHVKPTQEGETGRILTEEASLHASNVMFFSKEKNLTSKIEYFIDKEGVKKRRLKKTGEVID 118          
BLAST of EY680065 vs. ExPASy Swiss-Prot
Match: RL24_SYNPX (50S ribosomal protein L24 OS=Synechococcus sp. (strain WH8102) GN=rplX PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.574e-16
Identity = 44/104 (42.31%), Postives = 65/104 (62.50%), Query Frame = 1
Query:  232 KMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVXXXXXXXXXXXXXXXAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGEIID 543
            KM ++ GDTV+VIAG DKGK GE+ +   + + ++V+ +N++T+H                A +H+SNVMLYS   +VASRV   V  DG++ R L KTGE++D
Sbjct:   15 KMRIRKGDTVQVIAGKDKGKTGEVLRTLPNENRLIVEGVNMRTRHEKPTQEGETGRIVNEEASLHASNVMLYSTAKKVASRVEIVVEKDGSKKRKLKKTGEVLD 118          
BLAST of EY680065 vs. ExPASy Swiss-Prot
Match: RL24_PROM9 (50S ribosomal protein L24 OS=Prochlorococcus marinus (strain MIT 9312) GN=rplX PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.574e-16
Identity = 45/104 (43.27%), Postives = 61/104 (58.65%), Query Frame = 1
Query:  232 KMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVXXXXXXXXXXXXXXXAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGEIID 543
            KM +K GD VKVI G DKGK GE+ K     + V+VK INL+TKHV               A +H+SNVM +SK+  + S++ + +   G + R L KTGE+ID
Sbjct:   15 KMRIKTGDLVKVINGKDKGKTGEVLKTIPLENRVVVKGINLRTKHVKPTQEGETGRILTEEASLHASNVMFFSKDKNLTSKIEYFIDKQGVKKRRLKKTGEVID 118          
BLAST of EY680065 vs. ExPASy Swiss-Prot
Match: RL24_PROMT (50S ribosomal protein L24 OS=Prochlorococcus marinus (strain NATL2A) GN=rplX PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.361e-16
Identity = 46/104 (44.23%), Postives = 65/104 (62.50%), Query Frame = 1
Query:  232 KMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVXXXXXXXXXXXXXXXAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGEIID 543
            KM ++ GDTV+VI+G DKGK GE+ K   + + V+V+ IN +TKHV                 +H+SNVM+YS + +VAS+V   V  DG++ R L KTGE+ID
Sbjct:   15 KMKIRKGDTVQVISGKDKGKTGEVLKTLPYENRVLVQGINQRTKHVKPSQEGETGRIETKEFSLHASNVMIYSTKEKVASKVEIFVDKDGSKKRRLKKTGELID 118          
BLAST of EY680065 vs. ExPASy Swiss-Prot
Match: RL24_CLONN (50S ribosomal protein L24 OS=Clostridium novyi (strain NT) GN=rplX PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.390e-16
Identity = 45/103 (43.69%), Postives = 61/103 (59.22%), Query Frame = 1
Query:  232 KMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVXXXXXXXXXXXXXXXAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGEII 540
            K+HV+  D V VI+G DKGK+ E+  V+   S V+VKD N+ TKHV               AP++SS VMLY      A+R+  K+L+DGT+VR   K GEI+
Sbjct:    3 KVHVRRTDKVVVISGKDKGKVSEVLAVYPKTSKVLVKDANVVTKHVKPNRENMQGGIVKKEAPMNSSKVMLYCTNCNSATRISKKLLEDGTKVRVCKKCGEIL 105          
The following BLAST results are available for this feature:
BLAST of EY680065 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 175
Match NameE-valueIdentityDescription
RL24_PROMA1.155e-1642.6150S ribosomal protein L24 OS=Prochlorococcus marin... [more]
RL24_PROM31.155e-1643.2750S ribosomal protein L24 OS=Prochlorococcus marin... [more]
RL24_PROMS1.509e-1643.2750S ribosomal protein L24 OS=Prochlorococcus marin... [more]
RL24_PROMM1.509e-1643.2750S ribosomal protein L24 OS=Prochlorococcus marin... [more]
RL24_PROM21.971e-1643.2750S ribosomal protein L24 OS=Prochlorococcus marin... [more]
RL24_PROM01.971e-1643.2750S ribosomal protein L24 OS=Prochlorococcus marin... [more]
RL24_SYNPX2.574e-1642.3150S ribosomal protein L24 OS=Synechococcus sp. (st... [more]
RL24_PROM92.574e-1643.2750S ribosomal protein L24 OS=Prochlorococcus marin... [more]
RL24_PROMT3.361e-1644.2350S ribosomal protein L24 OS=Prochlorococcus marin... [more]
RL24_CLONN4.390e-1643.6950S ribosomal protein L24 OS=Clostridium novyi (st... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-650-007-A09-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY680065 ID=EY680065; Name=EY680065; organism=Citrus sinensis; type=EST; length=882bp
AAGAGTTGGAGAGAACAAGCAGCAGCAGCAAAAATGGCAGCAATGGCTGC
ACTTCAAAGCTCAATGACGTCACTTTCCATCTCCTCGAACTCCTTCTTTG
GCCAACGCCTCTCTTTCCCCTCTCTTTCTCCCGTAACTGTCAAGCCGACA
GACAAACCATGTCTCATTGTAGTGAGGCTTAAACGGTGGGAAAGAAAGGA
ATGCAAGCCAAATAGCCTTCCAGTTTTACACAAAATGCATGTTAAGGCGG
GAGATACAGTTAAAGTCATAGCCGGTTGTGACAAGGGTAAAATTGGAGAG
ATTACTAAGGTCTTTAGGCACAACAGCACGGTGATGGTCAAAGACATAAA
TCTCAAGACAAAGCATGTGAAGAAGAGAGAAGAGGAGGAACAAGGGCAGA
TCATTAAGATTGAAGCACCCATTCACAGCTCTAATGTGATGCTCTACTCA
AAAGAAATGGAAGTAGCAAGCCGGGTGGGTCATAAAGTCCTTGATGATGG
AACACGAGTCCGCTACCTTATAAAAACCGGAGAAATAATTGACAGTGCTG
AAAACTGGAAGAAACTGAAGGAAGCAAATCGCCAAGAGAAAACTGAAGTA
GCTACTGCTGCTTAAAAATCCCCACTCCTGACTTCACCTGTAACGTATTT
TCTGAAAGTCCTTTAATATCTTGGCCACCTGTCCAATTTAGTTTATTAAA
CCTTTGTTGAATCTCATTTCCCTGGGAATTAAAATAGTCATTCTGGGTTT
TTGGTGGGCCCAATGGCAAACTAAAAAATAGAATTTTTGAAAGCCCAACT
TTGAAGTTTGTTTTTAACTGTTATTTTTGGGAAATACTTAAAAAAAAAAT
TTTGCCCGGGGGGCCAAAAAAAAAAAAAAAAA
back to top