EY680065

Overview
NameEY680065
Unique NameEY680065
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length882
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY680065 vs. ExPASy Swiss-Prot
Match: RL24_CLOPS (50S ribosomal protein L24 OS=Clostridium perfringens (strain SM101 / Type A) GN=rplX PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 7.009e-14
Identity = 41/101 (40.59%), Postives = 59/101 (58.42%), Query Frame = 1
Query:  232 KMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVXXXXXXXXXXXXXXXAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGE 534
            K+HV+  DTV VI+G DKGK GE+ +V      V+VK +NL  KH                A I+SS VML+ ++ + A+R+ HK+L++G +VR   K GE
Sbjct:    2 KVHVRKNDTVVVISGKDKGKTGEVLRVIPKTGKVVVKGVNLVKKHQKPNRQNMQGGIIEMEAAINSSKVMLFCEKCKKATRISHKLLENGAKVRVCKKCGE 102          
BLAST of EY680065 vs. ExPASy Swiss-Prot
Match: RL24_LACS1 (50S ribosomal protein L24 OS=Lactobacillus salivarius subsp. salivarius (strain UCC118) GN=rplX PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.561e-13
Identity = 47/102 (46.08%), Postives = 56/102 (54.90%), Query Frame = 1
Query:  235 MHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVXXXXXXXXXXXXXXXAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGEII 540
            M +K  D VKVIAG DKGK G + KVF     V+VK IN+  KH                APIH SNVML       A+RVG KV+ DG +VR   K+GEI+
Sbjct:    1 MFIKKNDKVKVIAGKDKGKEGTVEKVFPAQDRVIVKGINIVKKHQKPTNANPNGGIVEVEAPIHVSNVMLIDPSNNEATRVGFKVV-DGKKVRVSKKSGEIL 101          
BLAST of EY680065 vs. ExPASy Swiss-Prot
Match: RL24_THETN (50S ribosomal protein L24 OS=Thermoanaerobacter tengcongensis GN=rplX PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.039e-13
Identity = 41/104 (39.42%), Postives = 57/104 (54.81%), Query Frame = 1
Query:  229 HKMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVXXXXXXXXXXXXXXXAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGEII 540
            +K+HVK GD V VI+G DKGK G + + F     V+V+ +N+ TKH                APIHSS VMLY +      R G K+L++G +VRY  +  E +
Sbjct:    4 NKLHVKKGDMVVVISGKDKGKKGRVLQAFPKEGKVIVEGVNVVTKHRKATRPQKPGGIIHQEAPIHSSKVMLYCENCGRGVRYGIKILENGEKVRYCKRCNETL 107          
BLAST of EY680065 vs. ExPASy Swiss-Prot
Match: RL24_THELT (50S ribosomal protein L24 OS=Thermotoga lettingae (strain ATCC BAA-301 / DSM 14385 / TMO) GN=rplX PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.039e-13
Identity = 40/105 (38.10%), Postives = 59/105 (56.19%), Query Frame = 1
Query:  235 MHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVXXXXXXXXXXXXXXXAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGEIIDSA 549
            M VK  D V+VI+G DKGK G++ KV    + V+++ +N+  +H                API++S VML     +  +RVG + LDDG +VR+  K GEI+D A
Sbjct:    1 MRVKKDDLVEVISGKDKGKRGKVLKVLPRENKVVIQGVNIVKRHQRPIPQLREGGIIEREAPIYASKVMLVCPNCDKPTRVGMRFLDDGAKVRFCKKCGEIVDKA 105          
BLAST of EY680065 vs. ExPASy Swiss-Prot
Match: RL24_BACP2 (50S ribosomal protein L24 OS=Bacillus pumilus (strain SAFR-032) GN=rplX PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.663e-13
Identity = 45/103 (43.69%), Postives = 57/103 (55.34%), Query Frame = 1
Query:  235 MHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVXXXXXXXXXXXXXXXAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGEIID 543
            MHVK GD V VI+G DKGK G I   F  N  V+V+ INL  KH                APIH SNVM    +    +RVG+KV +DG +VR   K+G+++D
Sbjct:    1 MHVKKGDKVVVISGKDKGKQGVILAAFPKNDRVLVEGINLVKKHSKPTQANPQGGISEQEAPIHVSNVMPLDPKTGEVTRVGYKV-EDGKKVRVAKKSGQVLD 102          
BLAST of EY680065 vs. ExPASy Swiss-Prot
Match: RL24_ACIF5 (50S ribosomal protein L24 OS=Acidithiobacillus ferrooxidans (strain ATCC 53993) GN=rplX PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.663e-13
Identity = 39/102 (38.24%), Postives = 58/102 (56.86%), Query Frame = 1
Query:  235 MHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVXXXXXXXXXXXXXXXAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGEII 540
            + V+  D V V+AG DKGK G++ KV R +S V+V+ +N+  +HV               APIH SNV +++       R+G+KVL+DG +VR     GE+I
Sbjct:    2 LKVRKDDEVVVLAGKDKGKRGKVLKVLREDSRVLVEKVNMIKRHVRPDRMGKAGGIVEKEAPIHVSNVAIFNAATGGGDRIGYKVLEDGQKVRVFKSNGEVI 103          
BLAST of EY680065 vs. ExPASy Swiss-Prot
Match: RL24_ACIF2 (50S ribosomal protein L24 OS=Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / NCIB 8455) GN=rplX PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.663e-13
Identity = 39/102 (38.24%), Postives = 58/102 (56.86%), Query Frame = 1
Query:  235 MHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVXXXXXXXXXXXXXXXAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGEII 540
            + V+  D V V+AG DKGK G++ KV R +S V+V+ +N+  +HV               APIH SNV +++       R+G+KVL+DG +VR     GE+I
Sbjct:    2 LKVRKDDEVVVLAGKDKGKRGKVLKVLREDSRVLVEKVNMIKRHVRPDRMGKAGGIVEKEAPIHVSNVAIFNAATGGGDRIGYKVLEDGQKVRVFKSNGEVI 103          
BLAST of EY680065 vs. ExPASy Swiss-Prot
Match: RL24_MOOTA (50S ribosomal protein L24 OS=Moorella thermoacetica (strain ATCC 39073) GN=rplX PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.478e-13
Identity = 39/104 (37.50%), Postives = 57/104 (54.81%), Query Frame = 1
Query:  232 KMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVXXXXXXXXXXXXXXXAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGEIID 543
            ++HVK GDTV VI G D GK G++  V      V+V+ +N+  +H                AP+ SSNVML+  +    +R+G ++L DGT+ R   K GE+ID
Sbjct:    5 RVHVKKGDTVMVITGKDAGKKGKVLSVEPARGRVVVEGVNIVKRHTRPTQKMPQGGIIEKEAPVASSNVMLFCNKCNRPTRIGRQILADGTKTRVCKKCGEVID 108          
BLAST of EY680065 vs. ExPASy Swiss-Prot
Match: RL24_BACHD (50S ribosomal protein L24 OS=Bacillus halodurans GN=rplX PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.478e-13
Identity = 42/103 (40.78%), Postives = 59/103 (57.28%), Query Frame = 1
Query:  235 MHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVXXXXXXXXXXXXXXXAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGEIID 543
            MHVK GDTVKVI+G DKGK G I + +     V+V+ +N+  KH                APIH SNV+    +    +RVG+KV ++G +VR   K+GE++D
Sbjct:    1 MHVKKGDTVKVISGKDKGKQGVILEAYPKKDRVLVEGVNIVKKHAKPSQENPQGGILNMEAPIHVSNVLPIDPKTGEPTRVGYKV-ENGKKVRIAKKSGEVLD 102          
BLAST of EY680065 vs. ExPASy Swiss-Prot
Match: RL24_THEM4 (50S ribosomal protein L24 OS=Thermosipho melanesiensis (strain BI429 / DSM 12029) GN=rplX PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.543e-13
Identity = 40/101 (39.60%), Postives = 54/101 (53.47%), Query Frame = 1
Query:  241 VKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVXXXXXXXXXXXXXXXAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGEIID 543
            +K GDTVKV++G DKGK GE+  V      V+V+ +N+  +H                API+   V L       A+RVG + LDDG +VRY  K GE+ID
Sbjct:    5 IKKGDTVKVLSGKDKGKTGEVVTVIPKEDKVVVRGVNIVKRHQRPNAQMRQGGIIEKEAPIYVCKVALVCPSCGQATRVGFRFLDDGRKVRYCKKCGEVID 105          
The following BLAST results are available for this feature:
BLAST of EY680065 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 175
Match NameE-valueIdentityDescription
RL24_CLOPS7.009e-1440.5950S ribosomal protein L24 OS=Clostridium perfringe... [more]
RL24_LACS11.561e-1346.0850S ribosomal protein L24 OS=Lactobacillus salivar... [more]
RL24_THETN2.039e-1339.4250S ribosomal protein L24 OS=Thermoanaerobacter te... [more]
RL24_THELT2.039e-1338.1050S ribosomal protein L24 OS=Thermotoga lettingae ... [more]
RL24_BACP22.663e-1343.6950S ribosomal protein L24 OS=Bacillus pumilus (str... [more]
RL24_ACIF52.663e-1338.2450S ribosomal protein L24 OS=Acidithiobacillus fer... [more]
RL24_ACIF22.663e-1338.2450S ribosomal protein L24 OS=Acidithiobacillus fer... [more]
RL24_MOOTA3.478e-1337.5050S ribosomal protein L24 OS=Moorella thermoacetic... [more]
RL24_BACHD3.478e-1340.7850S ribosomal protein L24 OS=Bacillus halodurans G... [more]
RL24_THEM44.543e-1339.6050S ribosomal protein L24 OS=Thermosipho melanesie... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-007-A09-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY680065 ID=EY680065; Name=EY680065; organism=Citrus sinensis; type=EST; length=882bp
AAGAGTTGGAGAGAACAAGCAGCAGCAGCAAAAATGGCAGCAATGGCTGC
ACTTCAAAGCTCAATGACGTCACTTTCCATCTCCTCGAACTCCTTCTTTG
GCCAACGCCTCTCTTTCCCCTCTCTTTCTCCCGTAACTGTCAAGCCGACA
GACAAACCATGTCTCATTGTAGTGAGGCTTAAACGGTGGGAAAGAAAGGA
ATGCAAGCCAAATAGCCTTCCAGTTTTACACAAAATGCATGTTAAGGCGG
GAGATACAGTTAAAGTCATAGCCGGTTGTGACAAGGGTAAAATTGGAGAG
ATTACTAAGGTCTTTAGGCACAACAGCACGGTGATGGTCAAAGACATAAA
TCTCAAGACAAAGCATGTGAAGAAGAGAGAAGAGGAGGAACAAGGGCAGA
TCATTAAGATTGAAGCACCCATTCACAGCTCTAATGTGATGCTCTACTCA
AAAGAAATGGAAGTAGCAAGCCGGGTGGGTCATAAAGTCCTTGATGATGG
AACACGAGTCCGCTACCTTATAAAAACCGGAGAAATAATTGACAGTGCTG
AAAACTGGAAGAAACTGAAGGAAGCAAATCGCCAAGAGAAAACTGAAGTA
GCTACTGCTGCTTAAAAATCCCCACTCCTGACTTCACCTGTAACGTATTT
TCTGAAAGTCCTTTAATATCTTGGCCACCTGTCCAATTTAGTTTATTAAA
CCTTTGTTGAATCTCATTTCCCTGGGAATTAAAATAGTCATTCTGGGTTT
TTGGTGGGCCCAATGGCAAACTAAAAAATAGAATTTTTGAAAGCCCAACT
TTGAAGTTTGTTTTTAACTGTTATTTTTGGGAAATACTTAAAAAAAAAAT
TTTGCCCGGGGGGCCAAAAAAAAAAAAAAAAA
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