EY680065

Overview
NameEY680065
Unique NameEY680065
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length882
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY680065 vs. ExPASy Swiss-Prot
Match: RL24_PELTS (50S ribosomal protein L24 OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=rplX PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.543e-13
Identity = 41/103 (39.81%), Postives = 57/103 (55.34%), Query Frame = 1 
Query:  232 KMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVXXXXXXXXXXXXXXXAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGEII 540
            K+HV+ GDTV VI G + GK G++  V    S V+V+ +N+  +H                APIHSSNVML+  +    +RVG K L+DG +VR   + GE I
Sbjct:    5 KVHVRKGDTVLVITGKNAGKKGKVISVIPAKSRVVVEGVNVVKRHTKPTRKMPQGGIVEKEAPIHSSNVMLFCGKCNSPTRVGKKFLEDGEKVRVCKRCGETI 107
[Close]
BLAST of EY680065 vs. ExPASy Swiss-Prot
Match: RL24_LISW6 (50S ribosomal protein L24 OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=rplX PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.543e-13
Identity = 43/103 (41.75%), Postives = 56/103 (54.37%), Query Frame = 1 
Query:  235 MHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVXXXXXXXXXXXXXXXAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGEIID 543
            MHVK GD VKVI G DKGK G++   F     V+++ IN+  KH                APIH SNVML   +    +RVG++V  D  +VR   K+GE+ID
Sbjct:    1 MHVKKGDKVKVITGKDKGKSGKVLAAFPKKDRVLIEGINMVKKHTKPSNINPQGGILNVEAPIHVSNVMLIDPKTGEPTRVGYEVKGD-KKVRVAKKSGEVID 102
[Close]
BLAST of EY680065 vs. ExPASy Swiss-Prot
Match: RL24_LISMO (50S ribosomal protein L24 OS=Listeria monocytogenes GN=rplX PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.543e-13
Identity = 43/103 (41.75%), Postives = 56/103 (54.37%), Query Frame = 1 
Query:  235 MHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVXXXXXXXXXXXXXXXAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGEIID 543
            MHVK GD VKVI G DKGK G++   F     V+++ IN+  KH                APIH SNVML   +    +RVG++V  D  +VR   K+GE+ID
Sbjct:    1 MHVKKGDKVKVITGKDKGKSGKVLAAFPKKDRVLIEGINMVKKHTKPSNVNPQGGILNVEAPIHVSNVMLIDPKTGEPTRVGYEVKGD-KKVRVAKKSGEVID 102
[Close]
BLAST of EY680065 vs. ExPASy Swiss-Prot
Match: RL24_LISMH (50S ribosomal protein L24 OS=Listeria monocytogenes serotype 4a (strain HCC23) GN=rplX PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.543e-13
Identity = 43/103 (41.75%), Postives = 56/103 (54.37%), Query Frame = 1 
Query:  235 MHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVXXXXXXXXXXXXXXXAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGEIID 543
            MHVK GD VKVI G DKGK G++   F     V+++ IN+  KH                APIH SNVML   +    +RVG++V  D  +VR   K+GE+ID
Sbjct:    1 MHVKKGDKVKVITGKDKGKSGKVLAAFPKKDRVLIEGINMVKKHTKPSNVNPQGGILNVEAPIHVSNVMLIDPKTGEPTRVGYEVKGD-KKVRVAKKSGEVID 102
[Close]
BLAST of EY680065 vs. ExPASy Swiss-Prot
Match: RL24_LISMF (50S ribosomal protein L24 OS=Listeria monocytogenes serotype 4b (strain F2365) GN=rplX PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.543e-13
Identity = 43/103 (41.75%), Postives = 56/103 (54.37%), Query Frame = 1 
Query:  235 MHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVXXXXXXXXXXXXXXXAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGEIID 543
            MHVK GD VKVI G DKGK G++   F     V+++ IN+  KH                APIH SNVML   +    +RVG++V  D  +VR   K+GE+ID
Sbjct:    1 MHVKKGDKVKVITGKDKGKSGKVLAAFPKKDRVLIEGINMVKKHTKPSNINPQGGILNVEAPIHVSNVMLIDPKTGEPTRVGYEVKGD-KKVRVAKKSGEVID 102
[Close]
BLAST of EY680065 vs. ExPASy Swiss-Prot
Match: RL24_LISMC (50S ribosomal protein L24 OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=rplX PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.543e-13
Identity = 43/103 (41.75%), Postives = 56/103 (54.37%), Query Frame = 1 
Query:  235 MHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVXXXXXXXXXXXXXXXAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGEIID 543
            MHVK GD VKVI G DKGK G++   F     V+++ IN+  KH                APIH SNVML   +    +RVG++V  D  +VR   K+GE+ID
Sbjct:    1 MHVKKGDKVKVITGKDKGKSGKVLAAFPKKDRVLIEGINMVKKHTKPSNINPQGGILNVEAPIHVSNVMLIDPKTGEPTRVGYEVKGD-KKVRVAKKSGEVID 102
[Close]
BLAST of EY680065 vs. ExPASy Swiss-Prot
Match: RL24_LISIN (50S ribosomal protein L24 OS=Listeria innocua GN=rplX PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.543e-13
Identity = 43/103 (41.75%), Postives = 56/103 (54.37%), Query Frame = 1 
Query:  235 MHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVXXXXXXXXXXXXXXXAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGEIID 543
            MHVK GD VKVI G DKGK G++   F     V+++ IN+  KH                APIH SNVML   +    +RVG++V  D  +VR   K+GE+ID
Sbjct:    1 MHVKKGDKVKVITGKDKGKSGKVLAAFPKKDRVLIEGINMVKKHTKPSNINPQGGILNVEAPIHVSNVMLIDPKTGEPTRVGYEVKGD-KKVRVAKKSGEVID 102
[Close]
BLAST of EY680065 vs. ExPASy Swiss-Prot
Match: RL24_GEOSW (50S ribosomal protein L24 OS=Geobacillus sp. (strain WCH70) GN=rplX PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.543e-13
Identity = 41/103 (39.81%), Postives = 59/103 (57.28%), Query Frame = 1 
Query:  235 MHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVXXXXXXXXXXXXXXXAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGEIID 543
            MHVK GD V+VI+G DKGK G I   F   + V+V+ +N+  KH                APIH S VM    +  + +R+G+K++ DG +VRY  ++GEI+D
Sbjct:    1 MHVKKGDKVQVISGKDKGKQGVILAAFPKKNRVIVEGVNIVKKHAKPSQANPQGGIITKEAPIHVSKVMPLDPKTGLPTRIGYKIV-DGKKVRYAKRSGEILD 102
[Close]
BLAST of EY680065 vs. ExPASy Swiss-Prot
Match: RL24_GEOKA (50S ribosomal protein L24 OS=Geobacillus kaustophilus GN=rplX PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.543e-13
Identity = 42/103 (40.78%), Postives = 58/103 (56.31%), Query Frame = 1 
Query:  235 MHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVXXXXXXXXXXXXXXXAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGEIID 543
            MHVK GD V+VI+G DKGK G I   F   + V+V+ +N+  KH                APIH S VM    +    +R+G+K++ DG +VRY  K+GEI+D
Sbjct:    1 MHVKKGDKVQVISGKDKGKQGVILAAFPKKNRVIVEGVNIVKKHAKPSQANPQGGIIEKEAPIHVSKVMPLDPKTGEPTRIGYKIV-DGKKVRYAKKSGEILD 102
[Close]
BLAST of EY680065 vs. ExPASy Swiss-Prot
Match: RL24_BACST (50S ribosomal protein L24 OS=Bacillus stearothermophilus GN=rplX PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.543e-13
Identity = 42/103 (40.78%), Postives = 58/103 (56.31%), Query Frame = 1 
Query:  235 MHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVXXXXXXXXXXXXXXXAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGEIID 543
            MHVK GD V+VI+G DKGK G I   F   + V+V+ +N+  KH                APIH S VM    +    +R+G+K++ DG +VRY  K+GEI+D
Sbjct:    1 MHVKKGDKVQVISGKDKGKQGVILAAFPKKNRVIVEGVNIVKKHAKPSQANPQGGIIEKEAPIHVSKVMPLDPKTGEPTRIGYKIV-DGKKVRYAKKSGEILD 102
The following BLAST results are available for this feature:
BLAST of EY680065 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 175
Match NameE-valueIdentityDescription
RL24_PELTS4.543e-1339.8150S ribosomal protein L24 OS=Pelotomaculum thermop... [more]
RL24_LISW64.543e-1341.7550S ribosomal protein L24 OS=Listeria welshimeri s... [more]
RL24_LISMO4.543e-1341.7550S ribosomal protein L24 OS=Listeria monocytogene... [more]
RL24_LISMH4.543e-1341.7550S ribosomal protein L24 OS=Listeria monocytogene... [more]
RL24_LISMF4.543e-1341.7550S ribosomal protein L24 OS=Listeria monocytogene... [more]
RL24_LISMC4.543e-1341.7550S ribosomal protein L24 OS=Listeria monocytogene... [more]
RL24_LISIN4.543e-1341.7550S ribosomal protein L24 OS=Listeria innocua GN=r... [more]
RL24_GEOSW4.543e-1339.8150S ribosomal protein L24 OS=Geobacillus sp. (stra... [more]
RL24_GEOKA4.543e-1340.7850S ribosomal protein L24 OS=Geobacillus kaustophi... [more]
RL24_BACST4.543e-1340.7850S ribosomal protein L24 OS=Bacillus stearothermo... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-007-A09-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY680065 ID=EY680065; Name=EY680065; organism=Citrus sinensis; type=EST; length=882bp
AAGAGTTGGAGAGAACAAGCAGCAGCAGCAAAAATGGCAGCAATGGCTGC
ACTTCAAAGCTCAATGACGTCACTTTCCATCTCCTCGAACTCCTTCTTTG
GCCAACGCCTCTCTTTCCCCTCTCTTTCTCCCGTAACTGTCAAGCCGACA
GACAAACCATGTCTCATTGTAGTGAGGCTTAAACGGTGGGAAAGAAAGGA
ATGCAAGCCAAATAGCCTTCCAGTTTTACACAAAATGCATGTTAAGGCGG
GAGATACAGTTAAAGTCATAGCCGGTTGTGACAAGGGTAAAATTGGAGAG
ATTACTAAGGTCTTTAGGCACAACAGCACGGTGATGGTCAAAGACATAAA
TCTCAAGACAAAGCATGTGAAGAAGAGAGAAGAGGAGGAACAAGGGCAGA
TCATTAAGATTGAAGCACCCATTCACAGCTCTAATGTGATGCTCTACTCA
AAAGAAATGGAAGTAGCAAGCCGGGTGGGTCATAAAGTCCTTGATGATGG
AACACGAGTCCGCTACCTTATAAAAACCGGAGAAATAATTGACAGTGCTG
AAAACTGGAAGAAACTGAAGGAAGCAAATCGCCAAGAGAAAACTGAAGTA
GCTACTGCTGCTTAAAAATCCCCACTCCTGACTTCACCTGTAACGTATTT
TCTGAAAGTCCTTTAATATCTTGGCCACCTGTCCAATTTAGTTTATTAAA
CCTTTGTTGAATCTCATTTCCCTGGGAATTAAAATAGTCATTCTGGGTTT
TTGGTGGGCCCAATGGCAAACTAAAAAATAGAATTTTTGAAAGCCCAACT
TTGAAGTTTGTTTTTAACTGTTATTTTTGGGAAATACTTAAAAAAAAAAT
TTTGCCCGGGGGGCCAAAAAAAAAAAAAAAAA
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