EY680065

Overview
NameEY680065
Unique NameEY680065
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length882
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY680065 vs. ExPASy Swiss-Prot
Match: RL24_ALKOO (50S ribosomal protein L24 OS=Alkaliphilus oremlandii (strain OhILAs) GN=rplX PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.543e-13
Identity = 43/103 (41.75%), Postives = 60/103 (58.25%), Query Frame = 1
Query:  235 MHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVXXXXXXXXXXXXXXXAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGEIID 543
            MHVK GDTV VI G DKGK G++ +V    + V+V+ + + TKH                A I +SNVM++ K+     RVG+K L++G +VR   KTGE+ID
Sbjct:    1 MHVKKGDTVVVITGKDKGKKGKVLQVLPKKNRVIVEGVAMVTKHQKPNQQMQQGGRIEQEAAIDASNVMIWDKKANQGVRVGYK-LENGKKVRVSKKTGEVID 102          
BLAST of EY680065 vs. ExPASy Swiss-Prot
Match: RL24_THESQ (50S ribosomal protein L24 OS=Thermotoga sp. (strain RQ2) GN=rplX PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.933e-13
Identity = 38/103 (36.89%), Postives = 60/103 (58.25%), Query Frame = 1
Query:  235 MHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVXXXXXXXXXXXXXXXAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGEIID 543
            M +K GD V+VI+G DKGK G++ +V    + V+V+++N+  +H                API++S VM+     +  +RVG++  +DG +VRY  K GEIID
Sbjct:    1 MRIKKGDLVEVISGKDKGKRGKVLRVIPKENKVIVENVNMVKRHQRPIPQLREGGIIEREAPIYASKVMVVCPACDKRTRVGYRFTEDGKKVRYCKKCGEIID 103          
BLAST of EY680065 vs. ExPASy Swiss-Prot
Match: RL24_THEPX (50S ribosomal protein L24 OS=Thermoanaerobacter sp. (strain X514) GN=rplX PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.933e-13
Identity = 40/104 (38.46%), Postives = 58/104 (55.77%), Query Frame = 1
Query:  229 HKMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVXXXXXXXXXXXXXXXAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGEII 540
            +K+HVK GD V VI+G DKGK G++ + F     V+V+ +N+ TKH                API+SS VMLY +      R G KVL++G ++RY  +  E +
Sbjct:    4 NKLHVKKGDMVVVISGKDKGKKGKVLQAFPKEGKVIVEGVNIVTKHRKATSPQKPGGIIHQEAPIYSSKVMLYCENCGRGVRYGVKVLENGEKIRYCKRCNETL 107          
BLAST of EY680065 vs. ExPASy Swiss-Prot
Match: RL24_THEP3 (50S ribosomal protein L24 OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=rplX PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.933e-13
Identity = 40/104 (38.46%), Postives = 58/104 (55.77%), Query Frame = 1
Query:  229 HKMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVXXXXXXXXXXXXXXXAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGEII 540
            +K+HVK GD V VI+G DKGK G++ + F     V+V+ +N+ TKH                API+SS VMLY +      R G KVL++G ++RY  +  E +
Sbjct:    4 NKLHVKKGDMVVVISGKDKGKKGKVLQAFPKEGKVIVEGVNIVTKHRKATSPQKPGGIIHQEAPIYSSKVMLYCENCGRGVRYGVKVLENGEKIRYCKRCNETL 107          
BLAST of EY680065 vs. ExPASy Swiss-Prot
Match: RL24_THEP1 (50S ribosomal protein L24 OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=rplX PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.933e-13
Identity = 38/103 (36.89%), Postives = 60/103 (58.25%), Query Frame = 1
Query:  235 MHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVXXXXXXXXXXXXXXXAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGEIID 543
            M +K GD V+VI+G DKGK G++ +V    + V+V+++N+  +H                API++S VM+     +  +RVG++  +DG +VRY  K GEIID
Sbjct:    1 MRIKKGDLVEVISGKDKGKRGKVLRVIPKENKVIVENVNMVKRHQRPIPQLREGGIIEREAPIYASKVMVVCPACDKRTRVGYRFTEDGKKVRYCKKCGEIID 103          
BLAST of EY680065 vs. ExPASy Swiss-Prot
Match: RL24_THEMA (50S ribosomal protein L24 OS=Thermotoga maritima GN=rplX PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.933e-13
Identity = 38/103 (36.89%), Postives = 60/103 (58.25%), Query Frame = 1
Query:  235 MHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVXXXXXXXXXXXXXXXAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGEIID 543
            M +K GD V+VI+G DKGK G++ +V    + V+V+++N+  +H                API++S VM+     +  +RVG++  +DG +VRY  K GEIID
Sbjct:    1 MRIKKGDLVEVISGKDKGKRGKVLRVIPKENKVIVENVNMVKRHQRPVPQLREGGIIEREAPIYASKVMVVCPACDKRTRVGYRFTEDGKKVRYCKKCGEIID 103          
BLAST of EY680065 vs. ExPASy Swiss-Prot
Match: RL24_BACSK (50S ribosomal protein L24 OS=Bacillus clausii (strain KSM-K16) GN=rplX PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.749e-13
Identity = 43/102 (42.16%), Postives = 57/102 (55.88%), Query Frame = 1
Query:  235 MHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVXXXXXXXXXXXXXXXAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGEII 540
            MHVK GD V VI G DKGK G + + +   S V+V+ +N+  KH                APIHSSNVML   +    +RVG+K  ++G +VR   K+GEII
Sbjct:    1 MHVKKGDKVVVITGKDKGKQGTVLEAYPKKSRVLVEGVNMVKKHAKPSQDNPQGGILNQEAPIHSSNVMLVDPKTGERTRVGYKE-ENGKKVRVAKKSGEII 101          
BLAST of EY680065 vs. ExPASy Swiss-Prot
Match: RL24_LACBA (50S ribosomal protein L24 OS=Lactobacillus brevis (strain ATCC 367 / JCM 1170) GN=rplX PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.012e-12
Identity = 42/103 (40.78%), Postives = 59/103 (57.28%), Query Frame = 1
Query:  235 MHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVXXXXXXXXXXXXXXXAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGEIID 543
            M +K GD V+VIAG DKGK G ++KV    + V+V+ +N+  KH                APIH+SNVML        +R+G +V +DG +VR+  K+GE ID
Sbjct:    1 MLIKTGDKVRVIAGKDKGKEGTVSKVLNAKNRVIVQGVNMIKKHQKASQTNPQGGIIDIEAPIHASNVMLIDPSNNEPTRLGVRV-EDGHKVRFAKKSGETID 102          
BLAST of EY680065 vs. ExPASy Swiss-Prot
Match: RL24_BACHK (50S ribosomal protein L24 OS=Bacillus thuringiensis subsp. konkukian GN=rplX PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.012e-12
Identity = 43/103 (41.75%), Postives = 57/103 (55.34%), Query Frame = 1
Query:  235 MHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVXXXXXXXXXXXXXXXAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGEIID 543
            MHVK GD V+VI G DKGK G I   F   + V+V+ +N+  KH                APIH SNVM+   +    +RVG KV +DG +VR   K+GE++D
Sbjct:    1 MHVKKGDKVQVITGKDKGKQGVILVAFPKQNRVIVEGVNIVKKHSKPSQLNPQGGIITKEAPIHVSNVMILDPKTGEPTRVGFKV-EDGKKVRIAKKSGELLD 102          
BLAST of EY680065 vs. ExPASy Swiss-Prot
Match: RL24_BACCZ (50S ribosomal protein L24 OS=Bacillus cereus (strain ZK / E33L) GN=rplX PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.012e-12
Identity = 43/103 (41.75%), Postives = 57/103 (55.34%), Query Frame = 1
Query:  235 MHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVXXXXXXXXXXXXXXXAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGEIID 543
            MHVK GD V+VI G DKGK G I   F   + V+V+ +N+  KH                APIH SNVM+   +    +RVG KV +DG +VR   K+GE++D
Sbjct:    1 MHVKKGDKVQVITGKDKGKQGVILVAFPKQNRVIVEGVNIVKKHSKPSQLNPQGGIITKEAPIHVSNVMILDPKTGEPTRVGFKV-EDGKKVRIAKKSGELLD 102          
The following BLAST results are available for this feature:
BLAST of EY680065 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 175
Match NameE-valueIdentityDescription
RL24_ALKOO4.543e-1341.7550S ribosomal protein L24 OS=Alkaliphilus oremland... [more]
RL24_THESQ5.933e-1336.8950S ribosomal protein L24 OS=Thermotoga sp. (strai... [more]
RL24_THEPX5.933e-1338.4650S ribosomal protein L24 OS=Thermoanaerobacter sp... [more]
RL24_THEP35.933e-1338.4650S ribosomal protein L24 OS=Thermoanaerobacter ps... [more]
RL24_THEP15.933e-1336.8950S ribosomal protein L24 OS=Thermotoga petrophila... [more]
RL24_THEMA5.933e-1336.8950S ribosomal protein L24 OS=Thermotoga maritima G... [more]
RL24_BACSK7.749e-1342.1650S ribosomal protein L24 OS=Bacillus clausii (str... [more]
RL24_LACBA1.012e-1240.7850S ribosomal protein L24 OS=Lactobacillus brevis ... [more]
RL24_BACHK1.012e-1241.7550S ribosomal protein L24 OS=Bacillus thuringiensi... [more]
RL24_BACCZ1.012e-1241.7550S ribosomal protein L24 OS=Bacillus cereus (stra... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-007-A09-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY680065 ID=EY680065; Name=EY680065; organism=Citrus sinensis; type=EST; length=882bp
AAGAGTTGGAGAGAACAAGCAGCAGCAGCAAAAATGGCAGCAATGGCTGC
ACTTCAAAGCTCAATGACGTCACTTTCCATCTCCTCGAACTCCTTCTTTG
GCCAACGCCTCTCTTTCCCCTCTCTTTCTCCCGTAACTGTCAAGCCGACA
GACAAACCATGTCTCATTGTAGTGAGGCTTAAACGGTGGGAAAGAAAGGA
ATGCAAGCCAAATAGCCTTCCAGTTTTACACAAAATGCATGTTAAGGCGG
GAGATACAGTTAAAGTCATAGCCGGTTGTGACAAGGGTAAAATTGGAGAG
ATTACTAAGGTCTTTAGGCACAACAGCACGGTGATGGTCAAAGACATAAA
TCTCAAGACAAAGCATGTGAAGAAGAGAGAAGAGGAGGAACAAGGGCAGA
TCATTAAGATTGAAGCACCCATTCACAGCTCTAATGTGATGCTCTACTCA
AAAGAAATGGAAGTAGCAAGCCGGGTGGGTCATAAAGTCCTTGATGATGG
AACACGAGTCCGCTACCTTATAAAAACCGGAGAAATAATTGACAGTGCTG
AAAACTGGAAGAAACTGAAGGAAGCAAATCGCCAAGAGAAAACTGAAGTA
GCTACTGCTGCTTAAAAATCCCCACTCCTGACTTCACCTGTAACGTATTT
TCTGAAAGTCCTTTAATATCTTGGCCACCTGTCCAATTTAGTTTATTAAA
CCTTTGTTGAATCTCATTTCCCTGGGAATTAAAATAGTCATTCTGGGTTT
TTGGTGGGCCCAATGGCAAACTAAAAAATAGAATTTTTGAAAGCCCAACT
TTGAAGTTTGTTTTTAACTGTTATTTTTGGGAAATACTTAAAAAAAAAAT
TTTGCCCGGGGGGCCAAAAAAAAAAAAAAAAA
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